Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Forward (+)

19366954 .. 19368298

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26319.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGGGAAGGGCCCATGTTTTGGGTACTGAAGTCTGCAGTCCAGTGCAATGCTTGTAACTTCGCTGACATTCCTCATCCTACTTTTAGCCGTATTGCACTTGTAACTTCGCTGACATTCCTCATCCTACTTTTAGCCGTGACAGTAGGAAACCTGCAGTTGGGGCTGAGACTTAGACGAGTCTGGAGGCACAGTGATCATGGCAAAGGTGCAGGAAGAGACTTCCATCGCTGCCTGCCGTCGCAAAAGAGGTGGCGACGGCTCGTTGCCGTAGCCAAAAGCAACGGCCACGCCCTCAACGGCGACGGTAAAAATGCCGTCGCGAAGCCGTCGCCGTTGCTCATTCGCGACGGCAAAGCGGCTTTTGGCGACGGCTTTTTGCCGTGGCTAACCGATTTCTTTTTTGTAGTGGCAATTTGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.59

Weight (kDa)

10.37

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	162
AccB7I	CCANNNNNTGG	1 cut(s)	21
AccII	CGCG	2 cut(s)	323, 348
AciI	CCGC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	21, 160
Alw26I	GTCTC	2 cut(s)	163, 213
AoxI	GGCC	2 cut(s)	11, 286
ApaI	GGGCCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	11, 12
BaeGI	GKGCMC	1 cut(s)	15
BaeI	ACNNNNGTAYC	2 cut(s)	17, 50
BanII	GRGCYC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	1 cut(s)	234
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	163, 213
BfmI	CTRYAG	2 cut(s)	36, 155
BfuAI	ACCTGC	1 cut(s)	162
BisI	GCNGC	2 cut(s)	232, 360
BlsI	GCNGC	2 cut(s)	233, 361
BmgT120I	GGNCC	2 cut(s)	11, 12
BmiI	GGNNCC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 160
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	2 cut(s)	76, 123
BseLI	CCNNNNNNNGG	2 cut(s)	21, 160
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	2 cut(s)	323, 348
BshFI	GGCC	2 cut(s)	13, 288
BslI	CCNNNNNNNGG	2 cut(s)	21, 160
BsmAI	GTCTC	2 cut(s)	163, 213
BsnI	GGCC	2 cut(s)	13, 288
Bsp120I	GGGCCC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	196
Bsp68I	TCGCGA	2 cut(s)	323, 348
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	2 cut(s)	13, 288
BspCNI	CTCAG	1 cut(s)	159
BspFNI	CGCG	2 cut(s)	323, 348
BspLI	GGNNCC	1 cut(s)	13
BspMAI	CTGCAG	2 cut(s)	40, 159
BspMI	ACCTGC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	1 cut(s)	196
Bst4CI	ACNGT	3 cut(s)	145, 194, 308
Bst6I	CTCTTC	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	167, 173
BstDSI	CCRYGG	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	76, 123
BstFNI	CGCG	2 cut(s)	323, 348
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	2 cut(s)	163, 213
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstSFI	CTRYAG	2 cut(s)	36, 155
BstSLI	GKGCMC	1 cut(s)	15
BstUI	CGCG	2 cut(s)	323, 348
BstV1I	GCAGC	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	13, 288
BtgI	CCRYGG	1 cut(s)	383
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	76, 123
BtsIMutI	CAGTG	2 cut(s)	50, 199
BtuMI	TCGCGA	2 cut(s)	323, 348
BveI	ACCTGC	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	11, 12
Csp6I	GTAC	1 cut(s)	26
CspCI	CAANNNNNGTGG	2 cut(s)	233, 268
CviAII	CATG	2 cut(s)	16, 200
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	2 cut(s)	167, 173
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	2 cut(s)	19, 203
FaiI	YATR	2 cut(s)	17, 201
FatI	CATG	2 cut(s)	15, 199
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	232, 360
FokI	GGATG	2 cut(s)	63, 110
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	232, 360
GluI	GCNGC	2 cut(s)	232, 360
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	13, 288
Hin1II	CATG	2 cut(s)	19, 203
HinfI	GANTC	1 cut(s)	180
Hpy188III	TCNNGA	3 cut(s)	184, 322, 347
Hpy99I	CGWCG	7 cut(s)	244, 261, 308, 323, 334, 353, 374
HpyCH4III	ACNGT	3 cut(s)	145, 194, 308
HpyCH4V	TGCA	5 cut(s)	38, 48, 98, 157, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	167, 173
Hsp92II	CATG	2 cut(s)	19, 203
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	5 cut(s)	56, 167, 169, 198, 248
Lsp1109I	GCAGC	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	56, 103, 139
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	1 cut(s)	414
MlyI	GAGTC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	84, 131, 180, 243, 305
MseI	TTAA	1 cut(s)	424
MvnI	CGCG	2 cut(s)	323, 348
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	19, 203
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	139
NruI	TCGCGA	2 cut(s)	323, 348
PflMI	CCANNNNNTGG	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	233, 361
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	13
PspOMI	GGGCCC	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	11, 12
PstI	CTGCAG	2 cut(s)	40, 159
RruI	TCGCGA	2 cut(s)	323, 348
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	2 cut(s)	232, 360
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	2 cut(s)	11, 12
SchI	GAGTC	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	3 cut(s)	156, 211, 254
SfcI	CTRYAG	2 cut(s)	36, 155
Sse9I	AATT	1 cut(s)	414
SsiI	CCGC	1 cut(s)	359
TaaI	ACNGT	3 cut(s)	145, 194, 308
TasI	AATT	1 cut(s)	414
TauI	GCSGC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TscAI	CASTG	2 cut(s)	50, 199
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	139
TspRI	CASTG	2 cut(s)	50, 199
Van91I	CCANNNNNTGG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.