Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Forward (+)

23009630 .. 23017986

Gene Structure 8357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29701.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCAAGTTTGCCGTCGCTAATGGCCAAAAGCAACGGCCACGTCCTCAACGGCGACAGAAAAAATGCCGTCGCCAAGCCGTCGTCGTTGCTTTTGACACCTCCGTCTGGGTCTGAGGCCACAGCTGCCTCGAGGAACGAGGGACGCCCGGCTGCCTTGATGAAGAGGGCACCTCCGGTTGCCTCGAGGAATGGGAAACGCTCTGCTGCCTCTGCGCCGTCTCCAGAAGGGTCACACGTCTGGCTGTCATGGGGCCCCAAAATGACGTTTGAGGGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

9.59

Weight (kDa)

10.6

Isoelectric Point (pI)

64.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AbsI	CCTCGAGG	2 cut(s)	130, 184
AccB1I	GGYRCC	1 cut(s)	169
AcoI	YGGCCR	2 cut(s)	24, 37
AcyI	GRCGYC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	235
AjiI	CACGTC	2 cut(s)	43, 238
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	225
Ama87I	CYCGRG	2 cut(s)	130, 184
AoxI	GGCC	4 cut(s)	24, 37, 117, 253
ApaI	GGGCCC	1 cut(s)	257
ApeKI	GCWGC	3 cut(s)	125, 152, 206
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	253, 254
AsuC2I	CCSGG	1 cut(s)	149
AvaI	CYCGRG	2 cut(s)	130, 184
BaeGI	GKGCMC	2 cut(s)	172, 257
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	112, 139, 193
BceAI	ACGGC	5 cut(s)	52, 53, 64, 67, 202
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	280
BisI	GCNGC	3 cut(s)	126, 153, 207
BlsI	GCNGC	3 cut(s)	127, 154, 208
Bme1390I	CCNGG	1 cut(s)	149
BmeT110I	CYCGRG	2 cut(s)	130, 184
BmgBI	CACGTC	2 cut(s)	43, 238
BmgT120I	GGNCC	2 cut(s)	253, 254
BmiI	GGNNCC	4 cut(s)	171, 254, 255, 256
BmrFI	CCNGG	1 cut(s)	149
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	105
BseSI	GKGCMC	2 cut(s)	172, 257
BseXI	GCAGC	3 cut(s)	112, 139, 193
BshFI	GGCC	4 cut(s)	26, 39, 119, 255
BshNI	GGYRCC	1 cut(s)	169
BsiHKCI	CYCGRG	2 cut(s)	130, 184
BsiSI	CCGG	2 cut(s)	149, 176
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	225
BsmBI	CGTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	4 cut(s)	26, 39, 119, 255
BsoBI	CYCGRG	2 cut(s)	130, 184
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	172, 257
BspANI	GGCC	4 cut(s)	26, 39, 119, 255
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	4 cut(s)	171, 254, 255, 256
BspT107I	GGYRCC	1 cut(s)	169
BssNI	GRCGYC	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 212
BstSCI	CCNGG	1 cut(s)	147
BstSLI	GKGCMC	2 cut(s)	172, 257
BstV1I	GCAGC	3 cut(s)	112, 139, 193
BsuRI	GGCC	4 cut(s)	26, 39, 119, 255
BtrI	CACGTC	2 cut(s)	43, 238
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	253, 254
CseI	GACGC	1 cut(s)	153
CviAII	CATG	1 cut(s)	249
CviJI	RGCY	8 cut(s)	26, 39, 79, 119, 125, 152, 244, 255
CviKI_1	RGCY	8 cut(s)	26, 39, 79, 119, 125, 152, 244, 255
DdeI	CTNAG	1 cut(s)	114
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	2 cut(s)	24, 37
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	257
Eco88I	CYCGRG	2 cut(s)	130, 184
EcoO109I	RGGNCCY	2 cut(s)	253, 254
EcoT38I	GRGCYC	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	225
FaeI	CATG	1 cut(s)	252
FaiI	YATR	1 cut(s)	250
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	126, 153, 207
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	126, 153, 207
FspBI	CTAG	1 cut(s)	280
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	3 cut(s)	126, 153, 207
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	4 cut(s)	26, 39, 119, 255
HapII	CCGG	2 cut(s)	149, 176
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HpaII	CCGG	2 cut(s)	149, 176
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	1 cut(s)	224
Hpy99I	CGWCG	4 cut(s)	19, 74, 85, 88
HpyAV	CCTTC	1 cut(s)	221
HpyCH4IV	ACGT	3 cut(s)	42, 237, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 212
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	3 cut(s)	42, 237, 266
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	252
HspAI	GCGC	1 cut(s)	215
LpnPI	CCDG	5 cut(s)	93, 162, 189, 226, 237
Lsp1109I	GCAGC	3 cut(s)	112, 139, 193
MaeI	CTAG	1 cut(s)	280
MaeII	ACGT	3 cut(s)	42, 237, 266
MaeIII	GTNAC	1 cut(s)	231
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	172, 257
MlsI	TGGCCA	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	26
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	2 cut(s)	149, 176
MspR9I	CCNGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	125, 212
NciI	CCSGG	1 cut(s)	149
NlaIII	CATG	1 cut(s)	252
NlaIV	GGNNCC	4 cut(s)	171, 254, 255, 256
NmuCI	GTSAC	1 cut(s)	231
PaeR7I	CTCGAG	2 cut(s)	130, 184
PkrI	GCNGC	3 cut(s)	127, 154, 208
PspN4I	GGNNCC	4 cut(s)	171, 254, 255, 256
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	253, 254
PspXI	VCTCGAGB	2 cut(s)	130, 184
PvuII	CAGCTG	1 cut(s)	125
SatI	GCNGC	3 cut(s)	126, 153, 207
Sau96I	GGNCC	2 cut(s)	253, 254
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	172, 257
SetI	ASST	6 cut(s)	45, 103, 127, 175, 240, 269
Sfr274I	CTCGAG	2 cut(s)	130, 184
SlaI	CTCGAG	2 cut(s)	130, 184
SmlI	CTYRAG	2 cut(s)	130, 184
SmoI	CTYRAG	2 cut(s)	130, 184
SspMI	CTAG	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	147
TaiI	ACGT	3 cut(s)	45, 240, 269
TaqI	TCGA	2 cut(s)	131, 185
TseFI	GTSAC	1 cut(s)	231
TseI	GCWGC	3 cut(s)	125, 152, 206
Tsp45I	GTSAC	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	93
XhoI	CTCGAG	2 cut(s)	130, 184
XspI	CTAG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.