Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Reverse (-)

58106071 .. 58109589

Gene Structure 3519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG350300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAATGGCGCTGTTGCTTTGGTGGTTGTTGTAATCTGTTTGGAGAGTAGAGTTGTTTTCCATTCATTTGGGAGATACATTCAGGTGCCTCCGCCTTTGAATTACCTTTCGGTGACTACTACAATGCTTGGAGGTGCAGCTGGAGCTGGTGCCTATGCGCTGGGTATGATATCTGATGCCTTCAGCTCCTTGGCTTTCACTGCTCTGGCTATTGTAGTTAGTGTTGCTGGAGCTATCGTTGTCGGATTTCCTGTTTTGGTTTGCACAGAAATGGTTATGCCAATGTCTAGTAGCCGAGATAGAAGCATGTTTCAAACATATGATTATAATTTCTCCTCTTTTCAAGAGTGGTGCTGGAAGCAGTTCAATGTGAAACCAAGGCCTACATGGATAACAACAGAGTTTGGTGGACATGTTCTAGATGCAACTAGTGATCATGAAATTCGGAGAGAGTCTAGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.8

Weight (kDa)

5.84

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccB1I	GGYRCC	2 cut(s)	85, 149
AciI	CCGC	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	441
AcuI	CTGAAG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	4 cut(s)	100, 314, 344, 367
AhlI	ACTAGT	1 cut(s)	428
AluBI	AGCT	4 cut(s)	140, 146, 186, 233
AluI	AGCT	4 cut(s)	140, 146, 186, 233
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	11, 160
AsuHPI	GGTGA	1 cut(s)	124
BanI	GGYRCC	2 cut(s)	85, 149
BbvI	GCAGC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	433
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	4 cut(s)	288, 419, 429, 456
BfmI	CTRYAG	1 cut(s)	461
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	87, 151
BmsI	GCATC	2 cut(s)	166, 412
BpmI	CTGGAG	2 cut(s)	162, 249
BsaJI	CCNNGG	2 cut(s)	189, 377
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
BseDI	CCNNGG	2 cut(s)	189, 377
BseRI	GAGGAG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	382
BshNI	GGYRCC	2 cut(s)	85, 149
BsnI	GGCC	1 cut(s)	382
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	87, 151
BspT107I	GGYRCC	2 cut(s)	85, 149
BssECI	CCNNGG	2 cut(s)	189, 377
BssMI	GATC	1 cut(s)	433
BssT1I	CCWWGG	2 cut(s)	189, 377
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 160
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 200
BstNSI	RCATGY	2 cut(s)	310, 416
BstSFI	CTRYAG	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	2 cut(s)	11, 160
CviAII	CATG	4 cut(s)	307, 387, 413, 437
CviJI	RGCY	8 cut(s)	140, 146, 186, 194, 209, 233, 294, 382
CviKI_1	RGCY	8 cut(s)	140, 146, 186, 194, 209, 233, 294, 382
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	2 cut(s)	189, 377
Eco147I	AGGCCT	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	189, 377
ErhI	CCWWGG	2 cut(s)	189, 377
FaeI	CATG	4 cut(s)	310, 390, 416, 440
FatI	CATG	4 cut(s)	306, 386, 412, 436
FauNDI	CATATG	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	4 cut(s)	288, 419, 429, 456
GlaI	GCGC	2 cut(s)	10, 159
GluI	GCNGC	1 cut(s)	138
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	2 cut(s)	162, 249
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	382
HhaI	GCGC	2 cut(s)	11, 160
Hin1II	CATG	4 cut(s)	310, 390, 416, 440
Hin6I	GCGC	2 cut(s)	9, 158
HinP1I	GCGC	2 cut(s)	9, 158
HinfI	GANTC	1 cut(s)	452
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	3 cut(s)	175, 245, 447
Hpy188III	TCNNGA	3 cut(s)	344, 419, 437
Hpy8I	GTNNAC	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	137, 264, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 200
Hsp92II	CATG	4 cut(s)	310, 390, 416, 440
HspAI	GCGC	2 cut(s)	9, 158
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	3 cut(s)	143, 191, 230
LpnPI	CCDG	8 cut(s)	68, 126, 132, 146, 191, 213, 264, 340
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	2 cut(s)	166, 412
MaeI	CTAG	4 cut(s)	288, 419, 429, 456
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MluCI	AATT	3 cut(s)	100, 328, 441
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	99, 125, 346
MroXI	GAANNNNTTC	1 cut(s)	362
MslI	CAYNNNNRTG	2 cut(s)	83, 269
MspA1I	CMGCKG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	143, 200
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	4 cut(s)	310, 390, 416, 440
NlaIV	GGNNCC	2 cut(s)	87, 151
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	2 cut(s)	310, 416
PagI	TCATGA	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	382
PciI	ACATGT	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PscI	ACATGT	1 cut(s)	412
PsiI	TTATAA	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	87, 151
PvuII	CAGCTG	1 cut(s)	140
RseI	CAYNNNNRTG	2 cut(s)	83, 269
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	461
SetI	ASST	7 cut(s)	87, 108, 136, 142, 148, 188, 235
SfaNI	GCATC	2 cut(s)	166, 412
SfcI	CTRYAG	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	83, 269
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	3 cut(s)	100, 328, 441
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	4 cut(s)	288, 419, 429, 456
StuI	AGGCCT	1 cut(s)	382
StyI	CCWWGG	2 cut(s)	189, 377
TasI	AATT	3 cut(s)	100, 328, 441
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	3 cut(s)	17, 54, 453
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	441
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	2 cut(s)	310, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	4 cut(s)	288, 419, 429, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.