Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Forward (+)

18233888 .. 18234808

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0115900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGGAAAGGAGATTGGGATGGCTGGAAGAGTGGTCGGGTTCGATGGTGGCTGTCGGGGTTGAGAGGGCGGTGTAGGCGGCATTCACAGCTACGGGGTGCTAAGGCTCGACGGAGTTGGGGGCCGCGCGACGGAGGGAAGCTGGGATCGGAGATCTTTCTGCCAGGGGGAGATCGATCCGATCTGAACCGATCGGTGGTGCCAAACCCATTCCAGATCTGGTATCTGGCCAATGGGAGTTGTCATCTCCCGTCCGGCGAGTGGCCGCGTATTCACGGCAGTGCTGCGACGGCGGTGAAGGCTCGATCGGCAGATGGTGGTGGGTGTGCGACTGTGGGAATGCGGCTGGAACTCTTCCGGGCTTGGTGGGGCTTTTCCACATTTTTGGTCGGGTCTTGGGCCTGGGTCATGGTGTTGGGCCCAATCAGGGCTATATTGATTTTAATTTTCAGCTTGTTTGGTTTTTTTGTTGCAGCATATTTTATGCTTTTAATAAGTCCTAACCACGTTTTGGTTTGGAGATGTGGGCTTTATCCCGGCCTGCGCACCTTGCGTGCCATGTCTGCTCTAGGTAGGAGGCGAGTTCCTTGCTTTGTCAAATGGTCGCAGCCTCCTAGTGGCAGAATGAAACTAAGTGTCACCGGGTTATATTTCCGGTGGCAGCATACTAGGAAAGCTGATAGTATTGGTAACTCATGGCTCCGAGTGAGCATTATCTTTCTGGTTTGTCACCACAATTGTAAAGCGAATGGAGTAGCCCGTAGAACACTCTTCGCTAAAAGGTGCATGTTAGAATGCATATTCTTAGATGAGACGCCTGTTATTATCTCGAGTGATTCTCTTGAGGCTTATTGTAATTTGGGGTTAAGGCACTATGTCTCCCCCGTGTATTCTATGGTTTCATTAATGGTTAAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

34.45

Weight (kDa)

10.67

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	545
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccII	CGCG	3 cut(s)	127, 129, 268
AciI	CCGC	6 cut(s)	70, 79, 125, 266, 293, 343
AclWI	GGATC	2 cut(s)	154, 171
AcoI	YGGCCR	2 cut(s)	228, 263
AcyI	GRCGYC	1 cut(s)	815
AfiI	CCNNNNNNNGG	6 cut(s)	131, 196, 261, 427, 511, 617
AjnI	CCWGG	2 cut(s)	163, 401
AleI	CACNNNNGTG	1 cut(s)	279
AluBI	AGCT	4 cut(s)	91, 142, 453, 677
AluI	AGCT	4 cut(s)	91, 142, 453, 677
Alw26I	GTCTC	2 cut(s)	806, 883
AlwI	GGATC	2 cut(s)	154, 171
Ama87I	CYCGRG	1 cut(s)	829
AoxI	GGCC	6 cut(s)	122, 228, 263, 399, 418, 538
ApaI	GGGCCC	1 cut(s)	422
ApeKI	GCWGC	4 cut(s)	284, 473, 607, 661
AseI	ATTAAT	1 cut(s)	905
AspLEI	GCGC	2 cut(s)	129, 546
AspS9I	GGNCC	4 cut(s)	122, 399, 418, 419
AsuC2I	CCSGG	3 cut(s)	359, 537, 643
AsuHPI	GGTGA	3 cut(s)	307, 631, 722
AvaI	CYCGRG	1 cut(s)	829
BaeGI	GKGCMC	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	422
BbvI	GCAGC	4 cut(s)	271, 485, 619, 673
BccI	CCATC	3 cut(s)	14, 39, 308
BceAI	ACGGC	2 cut(s)	292, 306
BcgI	CGANNNNNNTGC	2 cut(s)	570, 604
BciT130I	CCWGG	2 cut(s)	165, 403
BcnI	CCSGG	3 cut(s)	359, 537, 643
BcoDI	GTCTC	2 cut(s)	806, 883
BfaI	CTAG	3 cut(s)	569, 615, 669
BglII	AGATCT	2 cut(s)	153, 216
BisI	GCNGC	8 cut(s)	80, 125, 266, 285, 344, 474, 608, 662
BlsI	GCNGC	8 cut(s)	81, 126, 267, 286, 345, 475, 609, 663
Bme1390I	CCNGG	5 cut(s)	165, 359, 403, 537, 643
BmeT110I	CYCGRG	1 cut(s)	829
BmgT120I	GGNCC	4 cut(s)	122, 399, 418, 419
BmiI	GGNNCC	4 cut(s)	123, 201, 420, 701
BmrFI	CCNGG	5 cut(s)	165, 359, 403, 537, 643
BplI	GAGNNNNNCTC	2 cut(s)	823, 855
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	3 cut(s)	359, 537, 643
Bsa29I	ATCGAT	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	815
BsaJI	CCNNGG	2 cut(s)	164, 402
BsaWI	WCCGGW	1 cut(s)	654
BsaXI	ACNNNNNCTCC	2 cut(s)	863, 893
Bsc4I	CCNNNNNNNGG	6 cut(s)	131, 196, 261, 427, 511, 617
BseBI	CCWGG	2 cut(s)	165, 403
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	164, 402
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	6 cut(s)	131, 196, 261, 427, 511, 617
BseSI	GKGCMC	1 cut(s)	422
BseXI	GCAGC	4 cut(s)	271, 485, 619, 673
BseYI	CCCAGC	1 cut(s)	142
Bsh1236I	CGCG	3 cut(s)	127, 129, 268
Bsh1285I	CGRYCG	2 cut(s)	194, 308
BshFI	GGCC	6 cut(s)	124, 230, 265, 401, 420, 540
BshNI	GGYRCC	1 cut(s)	199
BshVI	ATCGAT	1 cut(s)	175
BsiEI	CGRYCG	2 cut(s)	194, 308
BsiHKCI	CYCGRG	1 cut(s)	829
BsiSI	CCGG	5 cut(s)	255, 358, 537, 642, 655
BslI	CCNNNNNNNGG	6 cut(s)	131, 196, 261, 427, 511, 617
BsmAI	GTCTC	2 cut(s)	806, 883
BsmBI	CGTCTC	1 cut(s)	806
BsmI	GAATGC	3 cut(s)	82, 345, 800
BsnI	GGCC	6 cut(s)	124, 230, 265, 401, 420, 540
BsoBI	CYCGRG	1 cut(s)	829
Bsp120I	GGGCCC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	8 cut(s)	146, 153, 172, 176, 181, 191, 216, 305
BspACI	CCGC	6 cut(s)	70, 79, 125, 266, 293, 343
BspANI	GGCC	6 cut(s)	124, 230, 265, 401, 420, 540
BspDI	ATCGAT	1 cut(s)	175
BspFNI	CGCG	3 cut(s)	127, 129, 268
BspLI	GGNNCC	4 cut(s)	123, 201, 420, 701
BspPI	GGATC	2 cut(s)	154, 171
BspT107I	GGYRCC	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	164, 402
BssMI	GATC	8 cut(s)	146, 153, 172, 176, 181, 191, 216, 305
BssNI	GRCGYC	1 cut(s)	815
Bst2UI	CCWGG	2 cut(s)	165, 403
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	3 cut(s)	23, 359, 776
BstACI	GRCGYC	1 cut(s)	815
BstC8I	GCNNGC	2 cut(s)	542, 555
BstDEI	CTNAG	3 cut(s)	102, 632, 805
BstF5I	GGATG	1 cut(s)	25
BstFNI	CGCG	3 cut(s)	127, 129, 268
BstHHI	GCGC	2 cut(s)	129, 546
BstKTI	GATC	8 cut(s)	149, 156, 175, 179, 184, 194, 219, 308
BstMAI	GTCTC	2 cut(s)	806, 883
BstMBI	GATC	8 cut(s)	146, 153, 172, 176, 181, 191, 216, 305
BstMCI	CGRYCG	2 cut(s)	194, 308
BstMWI	GCNNNNNNNGC	7 cut(s)	76, 88, 290, 299, 308, 550, 563
BstNI	CCWGG	2 cut(s)	165, 403
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	5 cut(s)	163, 357, 401, 535, 641
BstSLI	GKGCMC	1 cut(s)	422
BstUI	CGCG	3 cut(s)	127, 129, 268
BstV1I	GCAGC	4 cut(s)	271, 485, 619, 673
BstX2I	RGATCY	2 cut(s)	153, 216
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	2 cut(s)	153, 216
Bsu15I	ATCGAT	1 cut(s)	175
BsuRI	GGCC	6 cut(s)	124, 230, 265, 401, 420, 540
BsuTUI	ATCGAT	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	25
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	542, 555
CfoI	GCGC	2 cut(s)	129, 546
Cfr13I	GGNCC	4 cut(s)	122, 399, 418, 419
ClaI	ATCGAT	1 cut(s)	175
CseI	GACGC	1 cut(s)	823
CviAII	CATG	4 cut(s)	409, 559, 696, 787
DdeI	CTNAG	3 cut(s)	102, 632, 805
DpnI	GATC	8 cut(s)	148, 155, 174, 178, 183, 193, 218, 307
DpnII	GATC	8 cut(s)	146, 153, 172, 176, 181, 191, 216, 305
EaeI	YGGCCR	2 cut(s)	228, 263
Eam1104I	CTCTTC	3 cut(s)	23, 359, 776
EarI	CTCTTC	3 cut(s)	23, 359, 776
Eco24I	GRGCYC	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	829
EcoRII	CCWGG	2 cut(s)	163, 401
EcoT22I	ATGCAT	1 cut(s)	800
EcoT38I	GRGCYC	1 cut(s)	422
Esp3I	CGTCTC	1 cut(s)	806
FaeI	CATG	4 cut(s)	412, 562, 699, 790
FatI	CATG	4 cut(s)	408, 558, 695, 786
Fnu4HI	GCNGC	8 cut(s)	80, 125, 266, 285, 344, 474, 608, 662
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	8 cut(s)	80, 125, 266, 285, 344, 474, 608, 662
FspBI	CTAG	3 cut(s)	569, 615, 669
FspI	TGCGCA	1 cut(s)	545
GlaI	GCGC	2 cut(s)	128, 545
GluI	GCNGC	8 cut(s)	80, 125, 266, 285, 344, 474, 608, 662
GsaI	CCCAGC	1 cut(s)	146
HaeIII	GGCC	6 cut(s)	124, 230, 265, 401, 420, 540
HapII	CCGG	5 cut(s)	255, 358, 537, 642, 655
HgaI	GACGC	1 cut(s)	823
HhaI	GCGC	2 cut(s)	129, 546
Hin1I	GRCGYC	1 cut(s)	815
Hin1II	CATG	4 cut(s)	412, 562, 699, 790
Hin6I	GCGC	2 cut(s)	127, 544
HinP1I	GCGC	2 cut(s)	127, 544
HinfI	GANTC	1 cut(s)	836
HpaII	CCGG	5 cut(s)	255, 358, 537, 642, 655
HphI	GGTGA	3 cut(s)	307, 631, 722
Hpy188I	TCNGA	4 cut(s)	151, 181, 186, 704
Hpy188III	TCNNGA	3 cut(s)	214, 829, 842
Hpy99I	CGWCG	3 cut(s)	114, 134, 292
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	3 cut(s)	473, 786, 798
HpyF10VI	GCNNNNNNNGC	7 cut(s)	76, 88, 290, 299, 308, 550, 563
HpyF3I	CTNAG	3 cut(s)	102, 632, 805
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	1 cut(s)	815
Hsp92II	CATG	4 cut(s)	412, 562, 699, 790
HspAI	GCGC	2 cut(s)	127, 544
Kzo9I	GATC	8 cut(s)	146, 153, 172, 176, 181, 191, 216, 305
LmnI	GCTCC	1 cut(s)	705
Lsp1109I	GCAGC	4 cut(s)	271, 485, 619, 673
MaeI	CTAG	3 cut(s)	569, 615, 669
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	3 cut(s)	637, 689, 728
MalI	GATC	8 cut(s)	148, 155, 174, 178, 183, 193, 218, 307
MboI	GATC	8 cut(s)	146, 153, 172, 176, 181, 191, 216, 305
MboII	GAAGA	3 cut(s)	40, 346, 763
MfeI	CAATTG	1 cut(s)	736
MflI	RGATCY	2 cut(s)	153, 216
MhlI	GDGCHC	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	3 cut(s)	444, 736, 856
MluNI	TGGCCA	1 cut(s)	230
MnlI	CCTC	5 cut(s)	59, 128, 570, 621, 838
Mox20I	TGGCCA	1 cut(s)	230
Mph1103I	ATGCAT	1 cut(s)	800
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	5 cut(s)	443, 491, 866, 905, 912
MslI	CAYNNNNRTG	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	5 cut(s)	255, 358, 537, 642, 655
MspR9I	CCNGG	5 cut(s)	165, 359, 403, 537, 643
MunI	CAATTG	1 cut(s)	736
Mva1269I	GAATGC	3 cut(s)	82, 345, 800
MvaI	CCWGG	2 cut(s)	165, 403
MvnI	CGCG	3 cut(s)	127, 129, 268
MwoI	GCNNNNNNNGC	7 cut(s)	76, 88, 290, 299, 308, 550, 563
NciI	CCSGG	3 cut(s)	359, 537, 643
NdeII	GATC	8 cut(s)	146, 153, 172, 176, 181, 191, 216, 305
NlaIII	CATG	4 cut(s)	412, 562, 699, 790
NlaIV	GGNNCC	4 cut(s)	123, 201, 420, 701
NmuCI	GTSAC	2 cut(s)	637, 728
NsbI	TGCGCA	1 cut(s)	545
NsiI	ATGCAT	1 cut(s)	800
NspI	RCATGY	1 cut(s)	790
OliI	CACNNNNGTG	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	829
PctI	GAATGC	3 cut(s)	82, 345, 800
PfeI	GAWTC	1 cut(s)	836
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	8 cut(s)	81, 126, 267, 286, 345, 475, 609, 663
Ple19I	CGATCG	2 cut(s)	194, 308
PshBI	ATTAAT	1 cut(s)	905
Psp6I	CCWGG	2 cut(s)	163, 401
PspFI	CCCAGC	1 cut(s)	142
PspGI	CCWGG	2 cut(s)	163, 401
PspN4I	GGNNCC	4 cut(s)	123, 201, 420, 701
PspOMI	GGGCCC	1 cut(s)	418
PspPI	GGNCC	4 cut(s)	122, 399, 418, 419
PsuI	RGATCY	2 cut(s)	153, 216
PvuI	CGATCG	2 cut(s)	194, 308
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	5 cut(s)	443, 491, 866, 905, 912
SatI	GCNGC	8 cut(s)	80, 125, 266, 285, 344, 474, 608, 662
Sau3AI	GATC	8 cut(s)	146, 153, 172, 176, 181, 191, 216, 305
Sau96I	GGNCC	4 cut(s)	122, 399, 418, 419
ScrFI	CCNGG	5 cut(s)	165, 359, 403, 537, 643
SduI	GDGCHC	1 cut(s)	422
SetI	ASST	8 cut(s)	93, 144, 455, 510, 551, 574, 679, 785
Sfr274I	CTCGAG	1 cut(s)	829
SlaI	CTCGAG	1 cut(s)	829
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	2 cut(s)	829, 842
SmoI	CTYRAG	2 cut(s)	829, 842
Sse9I	AATT	3 cut(s)	444, 736, 856
SsiI	CCGC	6 cut(s)	70, 79, 125, 266, 293, 343
SspMI	CTAG	3 cut(s)	569, 615, 669
StyD4I	CCNGG	5 cut(s)	163, 357, 401, 535, 641
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	5 cut(s)	43, 109, 175, 304, 830
TasI	AATT	3 cut(s)	444, 736, 856
TauI	GCSGC	4 cut(s)	82, 127, 268, 346
TfiI	GAWTC	1 cut(s)	836
Tru1I	TTAA	5 cut(s)	443, 491, 866, 905, 912
Tru9I	TTAA	5 cut(s)	443, 491, 866, 905, 912
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	2 cut(s)	637, 728
TseI	GCWGC	4 cut(s)	284, 473, 607, 661
Tsp45I	GTSAC	2 cut(s)	637, 728
TspDTI	ATGAA	2 cut(s)	641, 891
TspGWI	ACGGA	2 cut(s)	127, 147
TspRI	CASTG	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	511
VspI	ATTAAT	1 cut(s)	905
XceI	RCATGY	1 cut(s)	790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XhoI	CTCGAG	1 cut(s)	829
XspI	CTAG	3 cut(s)	569, 615, 669
Zsp2I	ATGCAT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.