RLG00000034039

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003686
Physical Location & Seq
Forward (+)
35709556 .. 35711670
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034039

Sequence Viewer

Length: 432 bp
ATGCCTTATCTCCAGGTCTCCACAAAGATGGCTTTGGAATCCTATACATTTGGATCGTACAAAATCGACAGCAGGGAAGTGTTTTATGACACTAATCTACCGTATGCCTTGGTTAATTTGCGCTCTGTTGTTTCTGTGTGCATATCCATTATAGAAGAAAAGGGTTCCTCACTATGCTTGAATATGGCTCCCCTCGCTTTCACTGCTCTGGCTGTTGTAGTTAGTGCCGCTGGAGCTATCGTTGCCGGATTTCCTGTTTTGTTCCTTCCACTGCCTTCAGTTGCCGGCTTCTATTTGGCTCGCTTTTTTACAAAGAAGAGTGTTCTATCCTACTTTGCCTTTGTTGTGCTTGGGAGCCTGATGGTTACATGGTTTGTAATGCACAATTTCTGGGATCTAAATATTTGGATGGCAGATTTGAGGATGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.97

Weight (kDa)

7.75

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 228
AclWI GGATC 2 cut(s) 61, 402
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 59
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 2 cut(s) 61, 402
AspLEI GCGC 1 cut(s) 123
BccI CCATC 3 cut(s) 22, 355, 403
BciT130I CCWGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 22
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 14
BmiI GGNNCC 3 cut(s) 166, 189, 356
BmrFI CCNGG 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bse118I RCCGGY 1 cut(s) 284
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 414, 429
BsiSI CCGG 2 cut(s) 246, 285
BsmAI GTCTC 1 cut(s) 22
Bso31I GGTCTC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 53, 394
BspACI CCGC 1 cut(s) 228
BspLI GGNNCC 3 cut(s) 166, 189, 356
BspPI GGATC 2 cut(s) 61, 402
BspTNI GGTCTC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 53, 394
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 311
BstC8I GCNNGC 2 cut(s) 286, 301
BstF5I GGATG 2 cut(s) 414, 429
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 2 cut(s) 56, 397
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 53, 394
BstMWI GCNNNNNNNGC 4 cut(s) 194, 203, 233, 242
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 28
BstYI RGATCY 1 cut(s) 394
BtsCI GGATG 2 cut(s) 414, 429
BtsI GCAGTG 2 cut(s) 201, 269
BtsIMutI CAGTG 2 cut(s) 201, 269
Cac8I GCNNGC 2 cut(s) 286, 301
CfoI GCGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 284
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 369
CviJI RGCY 7 cut(s) 32, 188, 212, 236, 288, 299, 357
CviKI_1 RGCY 7 cut(s) 32, 188, 212, 236, 288, 299, 357
CviQI GTAC 1 cut(s) 58
DpnI GATC 2 cut(s) 55, 396
DpnII GATC 2 cut(s) 53, 394
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 372
FaiI YATR 8 cut(s) 45, 87, 105, 143, 152, 175, 185, 370
FatI CATG 1 cut(s) 368
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 228
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 228
GsuI CTGGAG 1 cut(s) 252
HapII CCGG 2 cut(s) 246, 285
HhaI GCGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 372
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 38
HpaII CCGG 2 cut(s) 246, 285
HpyAV CCTTC 2 cut(s) 275, 285
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 141, 382
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 203, 233, 242
Hsp92II CATG 1 cut(s) 372
HspAI GCGC 1 cut(s) 121
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Kzo9I GATC 2 cut(s) 53, 394
LmnI GCTCC 3 cut(s) 193, 233, 354
LpnPI CCDG 9 cut(s) 26, 58, 194, 216, 259, 267, 298, 371, 376
MaeIII GTNAC 1 cut(s) 364
MalI GATC 2 cut(s) 55, 396
MboI GATC 2 cut(s) 53, 394
MboII GAAGA 2 cut(s) 167, 328
MflI RGATCY 1 cut(s) 394
MluCI AATT 2 cut(s) 115, 385
MnlI CCTC 3 cut(s) 178, 203, 414
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 2 cut(s) 246, 285
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 4 cut(s) 194, 203, 233, 242
NaeI GCCGGC 1 cut(s) 286
NdeII GATC 2 cut(s) 53, 394
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 372
NlaIV GGNNCC 3 cut(s) 166, 189, 356
PdiI GCCGGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 3 cut(s) 166, 189, 356
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 53, 394
ScrFI CCNGG 1 cut(s) 14
SetI ASST 2 cut(s) 18, 238
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 2 cut(s) 115, 385
SsiI CCGC 1 cut(s) 228
SspI AATATT 1 cut(s) 403
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 115, 385
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 2 cut(s) 208, 276
TspRI CASTG 2 cut(s) 208, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.