RchiOBHm_Chr2g0133761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003686
Physical Location & Seq
Reverse (-)
50665118 .. 50667144
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50489

Sequence Viewer

Length: 426 bp
ATGAATGGCGCTGTTGCTTTGGTGGTTGTTGTAATCTGTTTGGAGAGTAGAGTTGTTTTCCATTCTTTTGGGAGATACATTCAGGTGCCTCCGCCTTTGAATTACCTTTCGGTGACTACTACAATGCTTGGAGGTGCAGCTGGAGCTGGTGCCTATGCGCTAGGTATGATTTCTGATGCCTTCAGCTCCTTGGTTTTCACTGCTCTGGCTATTGTAGTTAGTGTTGTTGGAGCTATCGTTGTCGGATTTCCTGTTTTGGCTTGCACAGAAATGGTTATGCCAATGTCTAGTAGCCGAGATAGAAGCATGTTTCAAACATATGATTATAATTTCTCCTCTTTTCAAGAGTGGTGCTGGAAGCAGTTCAATGTGAAACCAAGGCCTACATGGATAACAACAGAGTTTGGTGGACATGTAAGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.4

Weight (kDa)

8.54

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AccB1I GGYRCC 2 cut(s) 85, 149
AciI CCGC 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 4 cut(s) 100, 314, 344, 367
AluBI AGCT 4 cut(s) 140, 146, 186, 233
AluI AGCT 4 cut(s) 140, 146, 186, 233
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 2 cut(s) 11, 160
AsuHPI GGTGA 1 cut(s) 124
BanI GGYRCC 2 cut(s) 85, 149
BbvI GCAGC 1 cut(s) 149
BfaI CTAG 2 cut(s) 161, 288
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 87, 151
BmsI GCATC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 189, 377
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
BseDI CCNNGG 2 cut(s) 189, 377
BseRI GAGGAG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 156
BshFI GGCC 1 cut(s) 382
BshNI GGYRCC 2 cut(s) 85, 149
BsnI GGCC 1 cut(s) 382
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 87, 151
BspT107I GGYRCC 2 cut(s) 85, 149
BssECI CCNNGG 2 cut(s) 189, 377
BssT1I CCWWGG 2 cut(s) 189, 377
BstC8I GCNNGC 1 cut(s) 262
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 160
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNSI RCATGY 2 cut(s) 310, 416
BstV1I GCAGC 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 68
BsuRI GGCC 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 262
CfoI GCGC 2 cut(s) 11, 160
CviAII CATG 3 cut(s) 307, 387, 413
CviJI RGCY 8 cut(s) 140, 146, 186, 209, 233, 260, 294, 382
CviKI_1 RGCY 8 cut(s) 140, 146, 186, 209, 233, 260, 294, 382
EciI GGCGGA 1 cut(s) 81
Eco130I CCWWGG 2 cut(s) 189, 377
Eco147I AGGCCT 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 189, 377
ErhI CCWWGG 2 cut(s) 189, 377
FaeI CATG 3 cut(s) 310, 390, 416
FaiI YATR 9 cut(s) 156, 167, 278, 308, 319, 321, 327, 388, 414
FatI CATG 3 cut(s) 306, 386, 412
FauNDI CATATG 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 2 cut(s) 161, 288
GlaI GCGC 2 cut(s) 10, 159
GluI GCNGC 1 cut(s) 138
GsuI CTGGAG 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 1 cut(s) 382
HhaI GCGC 2 cut(s) 11, 160
Hin1II CATG 3 cut(s) 310, 390, 416
Hin6I GCGC 2 cut(s) 9, 158
HinP1I GCGC 2 cut(s) 9, 158
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 2 cut(s) 175, 245
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 137, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
Hsp92II CATG 3 cut(s) 310, 390, 416
HspAI GCGC 2 cut(s) 9, 158
LmnI GCTCC 3 cut(s) 143, 191, 230
LpnPI CCDG 6 cut(s) 68, 126, 132, 191, 264, 340
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 161, 288
MaeIII GTNAC 1 cut(s) 112
MluCI AATT 2 cut(s) 100, 328
MmeI TCCRAC 2 cut(s) 208, 223
MnlI CCTC 3 cut(s) 99, 125, 346
MroXI GAANNNNTTC 1 cut(s) 362
MslI CAYNNNNRTG 2 cut(s) 83, 269
MspA1I CMGCKG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeI CATATG 1 cut(s) 319
NlaIII CATG 3 cut(s) 310, 390, 416
NlaIV GGNNCC 2 cut(s) 87, 151
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 2 cut(s) 310, 416
PceI AGGCCT 1 cut(s) 382
PciI ACATGT 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 362
PkrI GCNGC 1 cut(s) 139
PscI ACATGT 1 cut(s) 412
PsiI TTATAA 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 87, 151
PvuII CAGCTG 1 cut(s) 140
RseI CAYNNNNRTG 2 cut(s) 83, 269
SatI GCNGC 1 cut(s) 138
SetI ASST 8 cut(s) 87, 108, 136, 142, 148, 166, 188, 235
SfaNI GCATC 1 cut(s) 166
SmiMI CAYNNNNRTG 2 cut(s) 83, 269
Sse9I AATT 2 cut(s) 100, 328
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 1 cut(s) 92
SspMI CTAG 2 cut(s) 161, 288
StuI AGGCCT 1 cut(s) 382
StyI CCWWGG 2 cut(s) 189, 377
TasI AATT 2 cut(s) 100, 328
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 205
XceI RCATGY 2 cut(s) 310, 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 2 cut(s) 161, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.