Rmu_sc0005664.1_g000049

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005664.1
OG0003686
Physical Location & Seq
Reverse (-)
171421 .. 175455
4035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005664.1_g000049.1.cds

Sequence Viewer

Length: 471 bp
atgaatggcgccgttgctttggtggttgttgtaatctgtttggagagtagagttgttttccattcatttgggagatacattcaggtgcctccgcctttgaattacctttcagtgactactacaatgcttggaggtgcagctggagctggtgcctatgcgctgggtatgatatctgatgcctttagctccttggctttcactgctctggctattgtagttagtgttgctggagctatcgttgtcggatttcctgttttgttggctactatttggttggagcgcaagaattccctagctgtagaggttggtggcgtcgccattggtatttgcgacggcatttttccgtcgcaaaattcttgctacggcaaacgtttgccgtcgctaatagtcttgcgacggggaattgccgtggcaaataacattggcgacgccaccaacggcttcggaagcattgccgtcgcagagccgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

15.94

Weight (kDa)

7.72

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 8, 85, 149
AciI CCGC 1 cut(s) 92
AclI AACGTT 1 cut(s) 370
AcsI RAATTY 2 cut(s) 286, 352
AcyI GRCGYC 3 cut(s) 9, 312, 429
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 5 cut(s) 140, 146, 186, 233, 296
AluI AGCT 5 cut(s) 140, 146, 186, 233, 296
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 2 cut(s) 286, 352
AspLEI GCGC 3 cut(s) 11, 160, 282
BanI GGYRCC 3 cut(s) 8, 85, 149
BbvI GCAGC 1 cut(s) 149
BceAI ACGGC 7 cut(s) 349, 361, 379, 392, 440, 451, 454
BcgI CGANNNNNNTGC 1 cut(s) 439
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 297
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmiI GGNNCC 3 cut(s) 10, 87, 151
BmsI GCATC 1 cut(s) 166
BpmI CTGGAG 2 cut(s) 162, 249
BsaHI GRCGYC 3 cut(s) 9, 312, 429
BsaJI CCNNGG 2 cut(s) 189, 408
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bse3DI GCAATG 1 cut(s) 450
BseDI CCNNGG 2 cut(s) 189, 408
BseMI GCAATG 1 cut(s) 450
BseXI GCAGC 1 cut(s) 149
BseYI CCCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 156
BshNI GGYRCC 3 cut(s) 8, 85, 149
BspACI CCGC 1 cut(s) 92
BspLI GGNNCC 3 cut(s) 10, 87, 151
BspT107I GGYRCC 3 cut(s) 8, 85, 149
BsrDI GCAATG 1 cut(s) 450
BssECI CCNNGG 2 cut(s) 189, 408
BssNI GRCGYC 3 cut(s) 9, 312, 429
BssT1I CCWWGG 1 cut(s) 189
BstACI GRCGYC 3 cut(s) 9, 312, 429
BstDSI CCRYGG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 3 cut(s) 11, 160, 282
BstMWI GCNNNNNNNGC 3 cut(s) 143, 200, 447
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 408
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 117, 198
CfoI GCGC 3 cut(s) 11, 160, 282
CseI GACGC 2 cut(s) 301, 437
DinI GGCGCC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 189
Eco32I GATATC 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 286
EcoRV GATATC 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 189
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 189
FaiI YATR 2 cut(s) 156, 167
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 293
GlaI GCGC 3 cut(s) 10, 159, 281
GluI GCNGC 1 cut(s) 138
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 2 cut(s) 162, 249
HaeII RGCGCY 1 cut(s) 12
HgaI GACGC 2 cut(s) 301, 437
HhaI GCGC 3 cut(s) 11, 160, 282
Hin1I GRCGYC 3 cut(s) 9, 312, 429
Hin6I GCGC 3 cut(s) 9, 158, 280
HinP1I GCGC 3 cut(s) 9, 158, 280
Hpy188I TCNGA 3 cut(s) 175, 245, 446
Hpy99I CGWCG 7 cut(s) 317, 335, 349, 382, 399, 431, 461
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 200, 447
HpySE526I ACGT 1 cut(s) 370
Hsp92I GRCGYC 3 cut(s) 9, 312, 429
HspAI GCGC 3 cut(s) 9, 158, 280
KasI GGCGCC 1 cut(s) 8
LmnI GCTCC 4 cut(s) 143, 191, 230, 277
LpnPI CCDG 7 cut(s) 68, 126, 132, 146, 191, 213, 264
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 112
MluCI AATT 4 cut(s) 100, 286, 352, 402
Mly113I GGCGCC 1 cut(s) 9
MmeI TCCRAC 2 cut(s) 223, 255
MnlI CCTC 3 cut(s) 99, 125, 295
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 143, 200, 447
NarI GGCGCC 1 cut(s) 9
NlaIV GGNNCC 3 cut(s) 10, 87, 151
NmuCI GTSAC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 139
PluTI GGCGCC 1 cut(s) 12
Psp1406I AACGTT 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 10, 87, 151
PvuII CAGCTG 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 83
SatI GCNGC 1 cut(s) 138
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 297
SfoI GGCGCC 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 4 cut(s) 100, 286, 352, 402
SsiI CCGC 1 cut(s) 92
SspDI GGCGCC 1 cut(s) 8
SspMI CTAG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 373
TasI AATT 4 cut(s) 100, 286, 352, 402
TscAI CASTG 2 cut(s) 117, 205
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 17, 54
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 2 cut(s) 117, 205
XapI RAATTY 2 cut(s) 286, 352
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.