Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8166508.1

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 571

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8166508.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ctcctggcctctaccaggggagccctctggtgggtcactaagaatccgaaccagctgcggggaattcaagtcatgaatggcgccgttgctttggtggttgttgtaatctgcttggagattagagttgttttccattcatttgggaggtacattcaggtgcctccgcctttgaattaccttttggtgactactacaatgcttggaggtgcagctggagctggtgcctatgcgctgggtatgatatctgatgccttcagctccctggctttcactgctctggctgttgtagtgagtgctgctggagctatcgttgtcggatttcctgttttggttatttcacttaaaatatactatagcatctgctgtaaatttgtatctgttcacaaatcttttgtgcttcaaattcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.44

Weight (kDa)

9.61

Isoelectric Point (pI)

18.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	80, 157, 221
AciI	CCGC	2 cut(s)	58, 164
AcsI	RAATTY	3 cut(s)	63, 368, 402
AcuI	CTGAAG	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	4 cut(s)	15, 30, 31, 58
AgsI	TTSAA	3 cut(s)	68, 172, 401
AjnI	CCWGG	3 cut(s)	3, 14, 261
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	5 cut(s)	55, 212, 218, 258, 305
AluI	AGCT	5 cut(s)	55, 212, 218, 258, 305
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	3 cut(s)	55, 209, 296
ApoI	RAATTY	3 cut(s)	63, 368, 402
AspLEI	GCGC	2 cut(s)	83, 232
AsuHPI	GGTGA	1 cut(s)	196
BanI	GGYRCC	3 cut(s)	80, 157, 221
BanII	GRGCYC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	42, 221, 283
BceAI	ACGGC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	3 cut(s)	5, 16, 263
BfmI	CTRYAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	3 cut(s)	56, 210, 297
BlsI	GCNGC	3 cut(s)	57, 211, 298
Bme1390I	CCNGG	3 cut(s)	5, 16, 263
BmiI	GGNNCC	4 cut(s)	22, 82, 159, 223
BmrFI	CCNGG	3 cut(s)	5, 16, 263
BmsI	GCATC	2 cut(s)	238, 366
BpmI	CTGGAG	2 cut(s)	234, 321
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	15, 261
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 30, 31, 58
BseBI	CCWGG	3 cut(s)	5, 16, 263
BseDI	CCNNGG	2 cut(s)	15, 261
BseLI	CCNNNNNNNGG	4 cut(s)	15, 30, 31, 58
BseXI	GCAGC	3 cut(s)	42, 221, 283
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	3 cut(s)	80, 157, 221
BslI	CCNNNNNNNGG	4 cut(s)	15, 30, 31, 58
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	25
BspACI	CCGC	2 cut(s)	58, 164
BspANI	GGCC	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	4 cut(s)	22, 82, 159, 223
BspT107I	GGYRCC	3 cut(s)	80, 157, 221
BssECI	CCNNGG	2 cut(s)	15, 261
BssNI	GRCGYC	1 cut(s)	81
Bst2UI	CCWGG	3 cut(s)	5, 16, 263
BstACI	GRCGYC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 272, 302
BstNI	CCWGG	3 cut(s)	5, 16, 263
BstSCI	CCNGG	3 cut(s)	3, 14, 261
BstSFI	CTRYAG	1 cut(s)	352
BstV1I	GCAGC	3 cut(s)	42, 221, 283
BstXI	CCANNNNNNTGG	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	2 cut(s)	83, 232
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	9 cut(s)	8, 23, 55, 212, 218, 258, 266, 281, 305
CviKI_1	RGCY	9 cut(s)	8, 23, 55, 212, 218, 258, 266, 281, 305
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	39
DinI	GGCGCC	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	63
EcoRII	CCWGG	3 cut(s)	3, 14, 261
EcoRV	GATATC	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	25
EgeI	GGCGCC	1 cut(s)	82
EheI	GGCGCC	1 cut(s)	82
FaeI	CATG	1 cut(s)	76
FaiI	YATR	5 cut(s)	74, 228, 239, 349, 354
FatI	CATG	1 cut(s)	72
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	56, 210, 297
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	3 cut(s)	56, 210, 297
GlaI	GCGC	2 cut(s)	82, 231
GluI	GCNGC	3 cut(s)	56, 210, 297
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	2 cut(s)	234, 321
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	8
HhaI	GCGC	2 cut(s)	83, 232
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	2 cut(s)	81, 230
HinP1I	GCGC	2 cut(s)	81, 230
HinfI	GANTC	1 cut(s)	43
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	48, 247, 317
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 272, 302
HpyF3I	CTNAG	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	2 cut(s)	81, 230
KasI	GGCGCC	1 cut(s)	80
LmnI	GCTCC	4 cut(s)	20, 215, 263, 302
Lsp1109I	GCAGC	3 cut(s)	42, 221, 283
LweI	GCATC	2 cut(s)	238, 366
MaeIII	GTNAC	2 cut(s)	34, 184
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	4 cut(s)	63, 172, 368, 402
Mly113I	GGCGCC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	5 cut(s)	19, 35, 138, 171, 197
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	2 cut(s)	55, 212
MspR9I	CCNGG	3 cut(s)	5, 16, 263
MvaI	CCWGG	3 cut(s)	5, 16, 263
MwoI	GCNNNNNNNGC	3 cut(s)	215, 272, 302
NarI	GGCGCC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	4 cut(s)	22, 82, 159, 223
NmuCI	GTSAC	2 cut(s)	34, 184
PagI	TCATGA	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	3 cut(s)	57, 211, 298
PluTI	GGCGCC	1 cut(s)	84
Psp6I	CCWGG	3 cut(s)	3, 14, 261
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	3 cut(s)	3, 14, 261
PspN4I	GGNNCC	4 cut(s)	22, 82, 159, 223
PvuII	CAGCTG	2 cut(s)	55, 212
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	56, 210, 297
ScrFI	CCNGG	3 cut(s)	5, 16, 263
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	9 cut(s)	57, 149, 159, 180, 208, 214, 220, 260, 307
SfaNI	GCATC	2 cut(s)	238, 366
SfcI	CTRYAG	1 cut(s)	352
SfoI	GGCGCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	4 cut(s)	63, 172, 368, 402
SsiI	CCGC	2 cut(s)	58, 164
SspDI	GGCGCC	1 cut(s)	80
StyD4I	CCNGG	3 cut(s)	3, 14, 261
TasI	AATT	4 cut(s)	63, 172, 368, 402
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	2 cut(s)	34, 184
TseI	GCWGC	3 cut(s)	55, 209, 296
Tsp45I	GTSAC	2 cut(s)	34, 184
TspDTI	ATGAA	2 cut(s)	89, 126
TspRI	CASTG	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	13
XapI	RAATTY	3 cut(s)	63, 368, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.