Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Forward (+)

22067933 .. 22071351

Gene Structure 3419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18132.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCTCTACGACGAACATATTCATCTCCAAAAAGAAATCGGAGTAGAAGTGCTTGATCCATCAAGACCAAGCTTAATTGAGTTCCTAGATCATTTATCTAGGGATAAGACATCTGATAAGATTTCAGATCAACTCAAGAGATTTAATCTACGAACACTACAAAAAAGAATTCAGTTAGCCACTAGCATTTGCCACGGCAAAGATTTGCTGTCGCCGTTGGTCCAATATTTGCGACGGCACAACGACGGGAATTACACCGTCGCTAAATTTATACCACTTTACGACAGCAATTTAACGCGGTGGCGATATTACATAACATTTGCGACGGCAAATAGAGAAAGTAGATCTCAGTGTATCCTCCCCCTTCTCACTGGTATTGATCTTCTGCTCCTCCACCAACACTTTACACCGGTCGCCGACGAGTTCAAACCAACCTCACACGAGTTCACCGGTCGCCGACGAACTCAAACCAACCTCCCACGAGTTTACCGGTCGCCGACGAGTTCAAACGAACTTCCCACGAGTTCACTGGTCGCCGACGAGTTCAAACCAACCTCACACGAGTTCACCGGTCGCCGACGAGTTCAAACCAACCTCCCACAAGTTCACCGACAGGATACCTGGTGGTGTGCAAGGAATTTTGATAGTGAAGAAACCCAAAGGAGGTGCCATGTCAAAGTGAAGCTTGTGCTCAAGAAGAATGGGTACTATGGTGATTTCCCATTCTTAGAGAAGAAGATGCTCTGGCTTAGTGGTGAGGGCTGGGAAGGCTGCCCTGTGTCTAACCAAGAGAAACAGGGTGCTAATGGAAATGGTGGATTTACAATTAGCAAAACCTTGGGCGAATTGGAGCCGGTTCCAGTGGTTTGCTGCGTCTTGACTGACATTTGTGACGGCAAAGGCCGTCACTGCGTGCCGTTGCCAAATAAGTGGCAACGGCTCGTTGCCGTAGCAAAAAGTAATGGCCACGCCCTCAACGACGATGGGAAAAATGCCGTCGTCATGCCGTCGCCGTTAGTCTTTTGCGACGGCAAGATGACTTTTGGCGACGGCGTTGCGCCGTGGCTAACTGAATTAATTTTTGTAGTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

41.49

Weight (kDa)

8.83

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	666
AccII	CGCG	1 cut(s)	298
AciI	CCGC	1 cut(s)	298
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	964
AcsI	RAATTY	3 cut(s)	168, 266, 637
AdeI	CACNNNGTG	1 cut(s)	913
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	1 cut(s)	663
AgeI	ACCGGT	4 cut(s)	409, 449, 489, 569
AgsI	TTSAA	4 cut(s)	427, 507, 547, 587
AjnI	CCWGG	1 cut(s)	620
AluBI	AGCT	2 cut(s)	72, 685
AluI	AGCT	2 cut(s)	72, 685
Alw21I	GWGCWC	1 cut(s)	693
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	2 cut(s)	901, 964
ApeKI	GCWGC	2 cut(s)	771, 870
ApoI	RAATTY	3 cut(s)	168, 266, 637
AseI	ATTAAT	1 cut(s)	1076
AsiGI	ACCGGT	4 cut(s)	409, 449, 489, 569
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	1060
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	5 cut(s)	439, 559, 599, 725, 767
AvaII	GGWCC	1 cut(s)	220
BaeI	ACNNNNGTAYC	2 cut(s)	697, 730
BalI	TGGCCA	1 cut(s)	966
BanI	GGYRCC	1 cut(s)	666
BarI	GAAGNNNNNNTAC	2 cut(s)	689, 721
BauI	CACGAG	4 cut(s)	440, 480, 520, 560
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	758, 857
BccI	CCATC	2 cut(s)	67, 977
BcgI	CGANNNNNNTGC	2 cut(s)	1037, 1071
BciT130I	CCWGG	1 cut(s)	622
BciVI	GTATCC	2 cut(s)	365, 610
BfaI	CTAG	3 cut(s)	86, 99, 183
BfuI	GTATCC	2 cut(s)	365, 610
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	2 cut(s)	772, 871
BlsI	GCNGC	2 cut(s)	773, 872
Bme1390I	CCNGG	1 cut(s)	622
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	3 cut(s)	668, 852, 858
BmrFI	CCNGG	1 cut(s)	622
BmsI	GCATC	1 cut(s)	729
BpuEI	CTTGAG	2 cut(s)	119, 677
BsaJI	CCNNGG	3 cut(s)	193, 837, 1061
BsaWI	WCCGGW	4 cut(s)	409, 449, 489, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	663
Bse118I	RCCGGY	5 cut(s)	409, 449, 489, 569, 853
Bse1I	ACTGG	3 cut(s)	376, 534, 860
BseBI	CCWGG	1 cut(s)	622
BseDI	CCNNGG	3 cut(s)	193, 837, 1061
BseLI	CCNNNNNNNGG	1 cut(s)	663
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	3 cut(s)	376, 534, 860
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	758, 857
BseYI	CCCAGC	1 cut(s)	762
Bsh1236I	CGCG	1 cut(s)	298
Bsh1285I	CGRYCG	4 cut(s)	414, 454, 494, 574
BshFI	GGCC	2 cut(s)	903, 966
BshNI	GGYRCC	1 cut(s)	666
BshTI	ACCGGT	4 cut(s)	409, 449, 489, 569
BsiEI	CGRYCG	4 cut(s)	414, 454, 494, 574
BsiHKAI	GWGCWC	1 cut(s)	693
BsiSI	CCGG	5 cut(s)	410, 450, 490, 570, 854
BslI	CCNNNNNNNGG	1 cut(s)	663
BsnI	GGCC	2 cut(s)	903, 966
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	5 cut(s)	55, 88, 127, 344, 379
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	2 cut(s)	903, 966
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	668, 852, 858
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	666
BsrFI	RCCGGY	5 cut(s)	409, 449, 489, 569, 853
BsrI	ACTGG	3 cut(s)	376, 534, 860
BssAI	RCCGGY	5 cut(s)	409, 449, 489, 569, 853
BssECI	CCNNGG	3 cut(s)	193, 837, 1061
BssMI	GATC	5 cut(s)	55, 88, 127, 344, 379
BssSI	CACGAG	4 cut(s)	440, 480, 520, 560
BssT1I	CCWWGG	1 cut(s)	837
Bst2BI	CACGAG	4 cut(s)	440, 480, 520, 560
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	914
BstDEI	CTNAG	3 cut(s)	348, 727, 749
BstDSI	CCRYGG	2 cut(s)	193, 1061
BstFNI	CGCG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	1060
BstKTI	GATC	5 cut(s)	58, 91, 130, 347, 382
BstMBI	GATC	5 cut(s)	55, 88, 127, 344, 379
BstMCI	CGRYCG	4 cut(s)	414, 454, 494, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	768, 909
BstNI	CCWGG	1 cut(s)	622
BstSCI	CCNGG	1 cut(s)	620
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	758, 857
BstX2I	RGATCY	1 cut(s)	344
BstXI	CCANNNNNNTGG	1 cut(s)	930
BstYI	RGATCY	1 cut(s)	344
BsuI	GTATCC	2 cut(s)	365, 610
BsuRI	GGCC	2 cut(s)	903, 966
BtgI	CCRYGG	2 cut(s)	193, 1061
BtsI	GCAGTG	1 cut(s)	907
BtsIMutI	CAGTG	5 cut(s)	356, 369, 527, 867, 907
Cac8I	GCNNGC	1 cut(s)	914
CfoI	GCGC	1 cut(s)	1060
Cfr10I	RCCGGY	5 cut(s)	409, 449, 489, 569, 853
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	862
CsiI	ACCWGGT	1 cut(s)	620
Csp6I	GTAC	1 cut(s)	706
CspAI	ACCGGT	4 cut(s)	409, 449, 489, 569
CviAII	CATG	2 cut(s)	671, 1003
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	3 cut(s)	348, 727, 749
DpnI	GATC	5 cut(s)	57, 90, 129, 346, 381
DpnII	GATC	5 cut(s)	55, 88, 127, 344, 379
DraIII	CACNNNGTG	1 cut(s)	913
EaeI	YGGCCR	1 cut(s)	964
Eco130I	CCWWGG	1 cut(s)	837
Eco47I	GGWCC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	837
ErhI	CCWWGG	1 cut(s)	837
FaeI	CATG	2 cut(s)	674, 1006
FaiI	YATR	6 cut(s)	18, 272, 314, 672, 711, 1004
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FatI	CATG	2 cut(s)	670, 1002
Fnu4HI	GCNGC	2 cut(s)	772, 871
Fsp4HI	GCNGC	2 cut(s)	772, 871
FspBI	CTAG	3 cut(s)	86, 99, 183
GlaI	GCGC	1 cut(s)	1059
GluI	GCNGC	2 cut(s)	772, 871
GsaI	CCCAGC	1 cut(s)	766
HaeIII	GGCC	2 cut(s)	903, 966
HapII	CCGG	5 cut(s)	410, 450, 490, 570, 854
HgaI	GACGC	1 cut(s)	862
HhaI	GCGC	1 cut(s)	1060
Hin1II	CATG	2 cut(s)	674, 1006
Hin6I	GCGC	1 cut(s)	1058
HinP1I	GCGC	1 cut(s)	1058
HindIII	AAGCTT	2 cut(s)	70, 683
HpaII	CCGG	5 cut(s)	410, 450, 490, 570, 854
HphI	GGTGA	5 cut(s)	439, 559, 599, 725, 767
Hpy166II	GTNNAC	5 cut(s)	447, 487, 527, 567, 607
Hpy188I	TCNGA	3 cut(s)	41, 115, 127
Hpy188III	TCNNGA	4 cut(s)	63, 136, 694, 877
Hpy8I	GTNNAC	5 cut(s)	447, 487, 527, 567, 607
HpyAV	CCTTC	2 cut(s)	374, 761
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	1 cut(s)	632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	768, 909
HpyF3I	CTNAG	3 cut(s)	348, 727, 749
Hsp92II	CATG	2 cut(s)	674, 1006
HspAI	GCGC	1 cut(s)	1058
Kzo9I	GATC	5 cut(s)	55, 88, 127, 344, 379
LmnI	GCTCC	2 cut(s)	393, 850
Lsp1109I	GCAGC	2 cut(s)	758, 857
LweI	GCATC	1 cut(s)	729
MabI	ACCWGGT	1 cut(s)	620
MaeI	CTAG	3 cut(s)	86, 99, 183
MaeIII	GTNAC	2 cut(s)	890, 905
MalI	GATC	5 cut(s)	57, 90, 129, 346, 381
MboI	GATC	5 cut(s)	55, 88, 127, 344, 379
MboII	GAAGA	5 cut(s)	374, 662, 709, 745, 748
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	693
MlsI	TGGCCA	1 cut(s)	966
MluNI	TGGCCA	1 cut(s)	966
MnlI	CCTC	9 cut(s)	368, 401, 445, 485, 565, 605, 657, 751, 983
Mox20I	TGGCCA	1 cut(s)	966
MroXI	GAANNNNTTC	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	966
MseI	TTAA	4 cut(s)	74, 144, 293, 1076
Msp20I	TGGCCA	1 cut(s)	966
MspI	CCGG	5 cut(s)	410, 450, 490, 570, 854
MspR9I	CCNGG	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	622
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	768, 909
NdeII	GATC	5 cut(s)	55, 88, 127, 344, 379
NlaIII	CATG	2 cut(s)	674, 1006
NlaIV	GGNNCC	3 cut(s)	668, 852, 858
NmuCI	GTSAC	2 cut(s)	890, 905
PcsI	WCGNNNNNNNCGW	1 cut(s)	975
PdmI	GAANNNNTTC	1 cut(s)	18
PinAI	ACCGGT	4 cut(s)	409, 449, 489, 569
PkrI	GCNGC	2 cut(s)	773, 872
PshBI	ATTAAT	1 cut(s)	1076
Psp6I	CCWGG	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	762
PspGI	CCWGG	1 cut(s)	620
PspN4I	GGNNCC	3 cut(s)	668, 852, 858
PspPI	GGNCC	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
SaqAI	TTAA	4 cut(s)	74, 144, 293, 1076
SatI	GCNGC	2 cut(s)	772, 871
Sau3AI	GATC	5 cut(s)	55, 88, 127, 344, 379
Sau96I	GGNCC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	622
SduI	GDGCHC	1 cut(s)	693
SetI	ASST	9 cut(s)	74, 437, 477, 557, 597, 623, 668, 687, 839
SexAI	ACCWGGT	1 cut(s)	620
SfaNI	GCATC	1 cut(s)	729
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	134, 692
SmoI	CTYRAG	2 cut(s)	134, 692
SsiI	CCGC	1 cut(s)	298
SspI	AATATT	1 cut(s)	227
SspMI	CTAG	3 cut(s)	86, 99, 183
StyD4I	CCNGG	1 cut(s)	620
StyI	CCWWGG	1 cut(s)	837
TaaI	ACNGT	1 cut(s)	259
Tru1I	TTAA	4 cut(s)	74, 144, 293, 1076
Tru9I	TTAA	4 cut(s)	74, 144, 293, 1076
TscAI	CASTG	5 cut(s)	356, 376, 534, 867, 914
TseFI	GTSAC	2 cut(s)	890, 905
TseI	GCWGC	2 cut(s)	771, 870
Tsp45I	GTSAC	2 cut(s)	890, 905
TspDTI	ATGAA	1 cut(s)	11
TspRI	CASTG	5 cut(s)	356, 376, 534, 867, 914
VpaK11BI	GGWCC	1 cut(s)	220
VspI	ATTAAT	1 cut(s)	1076
XapI	RAATTY	3 cut(s)	168, 266, 637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	3 cut(s)	86, 99, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.