FvH4_6g16754

CYPRO4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003686
Physical Location & Seq
Reverse (-)
10660747 .. 10662492
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16754.t1

Sequence Viewer

Length: 438 bp
ATGAATCTGCAAAGATTTGTTTTTGCTCATCTCAGGGGTGGTCTTGGTGGACTGGATAGAGTTATGGTCGGAGGACACAGCCTGGCCTTGACTCATCGGAGGAAGGCGAAGATGGTGGCTACGAATTCTCATCTATGCTTTTCTCTCTTCTTTGTGAGGATGACCGACGCTCGATCTATGGGTTTTGGCCTTCTAGAATCTGATTGGGATGGGAAGACAAAGACCGGCTTTGCTGGGCGTATGGAGAATAGGATTTCTGCCCCAAGGTTGTTGAAGCTCACTCCTCTGGATTCTCACTTGGCAGACATTAATAACAAGTTTCGTAATGCTCAGTTTTCATGGGTTGGATTATTGGCTGATATAGTAGATATGTACAATGAAGATCTTTACACCATGCCTGTTAAGGAATTATCTTGTGGTGTTATAGTGGTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VID27

Protein Analysis

146

Amino Acids

16.25

Weight (kDa)

9.56

Isoelectric Point (pI)

29.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 1 cut(s) 374
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
AoxI GGCC 2 cut(s) 84, 187
ApoI RAATTY 1 cut(s) 124
AseI ATTAAT 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 221
BccI CCATC 2 cut(s) 106, 203
BciT130I CCWGG 1 cut(s) 83
BfaI CTAG 1 cut(s) 194
BglII AGATCT 1 cut(s) 382
Bme1390I CCNGG 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 263
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 2 cut(s) 165, 214
BseMII CTCAG 2 cut(s) 46, 344
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 273
BseYI CCCAGC 1 cut(s) 233
BshFI GGCC 2 cut(s) 86, 189
BsiSI CCGG 1 cut(s) 225
BsnI GGCC 2 cut(s) 86, 189
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 2 cut(s) 173, 382
BspANI GGCC 2 cut(s) 86, 189
BspCNI CTCAG 2 cut(s) 45, 343
BsrFI RCCGGY 1 cut(s) 224
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 2 cut(s) 173, 382
BssT1I CCWWGG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 32, 330
BstF5I GGATG 2 cut(s) 165, 214
BstKTI GATC 2 cut(s) 176, 385
BstMBI GATC 2 cut(s) 173, 382
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 2 cut(s) 86, 189
BtsCI GGATG 2 cut(s) 165, 214
Cfr10I RCCGGY 1 cut(s) 224
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 373
CviAII CATG 2 cut(s) 339, 394
CviJI RGCY 7 cut(s) 81, 86, 119, 189, 228, 277, 356
CviKI_1 RGCY 7 cut(s) 81, 86, 119, 189, 228, 277, 356
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 32, 330
DpnI GATC 2 cut(s) 175, 384
DpnII GATC 2 cut(s) 173, 382
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 2 cut(s) 342, 397
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 2 cut(s) 338, 393
FokI GGATG 2 cut(s) 172, 221
FspBI CTAG 1 cut(s) 194
GsaI CCCAGC 1 cut(s) 237
HaeIII GGCC 2 cut(s) 86, 189
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 176
Hin1II CATG 2 cut(s) 342, 397
HinfI GANTC 4 cut(s) 4, 91, 197, 290
HpaII CCGG 1 cut(s) 225
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 3 cut(s) 71, 99, 202
Hpy188III TCNNGA 2 cut(s) 194, 287
Hpy8I GTNNAC 1 cut(s) 50
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 2 cut(s) 97, 200
HpyCH4V TGCA 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 32, 330
Hsp92II CATG 2 cut(s) 342, 397
Kzo9I GATC 2 cut(s) 173, 382
LpnPI CCDG 8 cut(s) 19, 38, 68, 95, 219, 238, 272, 411
MaeI CTAG 1 cut(s) 194
MalI GATC 2 cut(s) 175, 384
MboI GATC 2 cut(s) 173, 382
MboII GAAGA 4 cut(s) 121, 139, 226, 392
MflI RGATCY 1 cut(s) 382
MluCI AATT 2 cut(s) 124, 407
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 2 cut(s) 49, 325
MnlI CCTC 4 cut(s) 65, 93, 150, 294
MseI TTAA 2 cut(s) 309, 402
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
NdeII GATC 2 cut(s) 173, 382
NlaIII CATG 2 cut(s) 342, 397
PfeI GAWTC 3 cut(s) 4, 197, 290
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PshBI ATTAAT 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 2 cut(s) 309, 402
Sau3AI GATC 2 cut(s) 173, 382
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 83
SetI ASST 2 cut(s) 269, 279
Sse9I AATT 2 cut(s) 124, 407
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 263
TaqI TCGA 1 cut(s) 172
TaqII GACCGA 1 cut(s) 179
TasI AATT 2 cut(s) 124, 407
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 3 cut(s) 4, 197, 290
Tru1I TTAA 2 cut(s) 309, 402
Tru9I TTAA 2 cut(s) 309, 402
TspDTI ATGAA 3 cut(s) 17, 327, 393
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 1 cut(s) 124
XbaI TCTAGA 1 cut(s) 193
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.