Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Forward (+)

44409920 .. 44411225

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00423300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTTGAACATTCTACATGTGTGTACATCTACCCTCCGGTGGGTCACTAAGAATCCGAACCAACCGCTAGGAATTCAAGTCATGAATGGCGCCGTTGCTTTGGTGGTTGTTGTAATCTTTTTAGAGATTAGAGTTGTTTTCCATTCATTTGGGAGATACATTCAGGTGCCTTCGCCTTTGAATTACCTTTTGGTGACTACTATAATGCTTGGAGGTGCAGGGGAGCTAGTGCCTATGCGCTGGGTTATAAATGTTGGACAAGTAATAACTACGCTTCTCTTTGTCCTACAGTTCCTTCCACCGCCCTCGCTGCTTGGCTTCTATTTGGCTCGCTTTTTTACAAAGAAGAGTGTTCCATCCTACTTTGCTTTTGTTGTGCTTGGGAGTCCGATGGTTACATGCTTTGTAATGCACAATTTCTGGGATCTAAATATTTGGATGGCGGCATGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.97

Weight (kDa)

9.51

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccB1I	GGYRCC	2 cut(s)	89, 166
AciI	CCGC	3 cut(s)	65, 302, 443
AclWI	GGATC	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	39, 40
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	3 cut(s)	7, 77, 181
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
AlwI	GGATC	1 cut(s)	432
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	72
AspLEI	GCGC	2 cut(s)	92, 240
AsuHPI	GGTGA	1 cut(s)	205
BanI	GGYRCC	2 cut(s)	89, 166
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	3 cut(s)	364, 385, 433
BceAI	ACGGC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	68, 227
BfmI	CTRYAG	1 cut(s)	287
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	2 cut(s)	311, 444
BlsI	GCNGC	2 cut(s)	312, 445
BmiI	GGNNCC	2 cut(s)	91, 168
BsaHI	GRCGYC	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 40
BseGI	GGATG	2 cut(s)	356, 444
BseLI	CCNNNNNNNGG	2 cut(s)	39, 40
BseXI	GCAGC	1 cut(s)	297
BseYI	CCCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	237
BshNI	GGYRCC	2 cut(s)	89, 166
BsiSI	CCGG	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	39, 40
Bsp1407I	TGTACA	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	3 cut(s)	65, 302, 443
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	91, 168
BspPI	GGATC	1 cut(s)	432
BspT107I	GGYRCC	2 cut(s)	89, 166
BsrGI	TGTACA	1 cut(s)	23
BssMI	GATC	1 cut(s)	424
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	341
BstACI	GRCGYC	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	356, 444
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 240
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNSI	RCATGY	3 cut(s)	20, 402, 450
BstSFI	CTRYAG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	356, 444
Cac8I	GCNNGC	1 cut(s)	331
CciI	TCATGA	1 cut(s)	81
CfoI	GCGC	2 cut(s)	92, 240
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	5 cut(s)	17, 82, 399, 447, 453
CviJI	RGCY	3 cut(s)	226, 318, 329
CviKI_1	RGCY	3 cut(s)	226, 318, 329
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	1 cut(s)	48
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EcoRI	GAATTC	1 cut(s)	72
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	5 cut(s)	20, 85, 402, 450, 456
FaiI	YATR	8 cut(s)	18, 83, 203, 236, 248, 400, 448, 454
FatI	CATG	5 cut(s)	16, 81, 398, 446, 452
Fnu4HI	GCNGC	2 cut(s)	311, 444
FokI	GGATG	2 cut(s)	343, 451
Fsp4HI	GCNGC	2 cut(s)	311, 444
FspBI	CTAG	2 cut(s)	68, 227
GlaI	GCGC	2 cut(s)	91, 239
GluI	GCNGC	2 cut(s)	311, 444
GsaI	CCCAGC	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	93
HapII	CCGG	1 cut(s)	37
HhaI	GCGC	2 cut(s)	92, 240
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	5 cut(s)	20, 85, 402, 450, 456
Hin6I	GCGC	2 cut(s)	90, 238
HinP1I	GCGC	2 cut(s)	90, 238
HinfI	GANTC	2 cut(s)	52, 385
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	2 cut(s)	57, 390
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	180, 305
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	218, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	5 cut(s)	20, 85, 402, 450, 456
HspAI	GCGC	2 cut(s)	90, 238
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	5 cut(s)	50, 149, 204, 226, 406
Lsp1109I	GCAGC	1 cut(s)	297
MaeI	CTAG	2 cut(s)	68, 227
MaeIII	GTNAC	3 cut(s)	43, 193, 394
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	1 cut(s)	358
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	3 cut(s)	72, 181, 415
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	3 cut(s)	44, 206, 316
MslI	CAYNNNNRTG	2 cut(s)	164, 451
MspI	CCGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	310
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	5 cut(s)	20, 85, 402, 450, 456
NlaIV	GGNNCC	2 cut(s)	91, 168
NmuCI	GTSAC	2 cut(s)	43, 193
NspI	RCATGY	3 cut(s)	20, 402, 450
PagI	TCATGA	1 cut(s)	81
PciI	ACATGT	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	312, 445
PleI	GAGTC	1 cut(s)	393
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	393
PscI	ACATGT	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	91, 168
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	2 cut(s)	164, 451
SatI	GCNGC	2 cut(s)	311, 444
Sau3AI	GATC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	394
SetI	ASST	4 cut(s)	168, 189, 217, 228
SfcI	CTRYAG	1 cut(s)	287
SfoI	GGCGCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	2 cut(s)	164, 451
Sse9I	AATT	3 cut(s)	72, 181, 415
SsiI	CCGC	3 cut(s)	65, 302, 443
SspDI	GGCGCC	1 cut(s)	89
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	68, 227
TaaI	ACNGT	1 cut(s)	291
TasI	AATT	3 cut(s)	72, 181, 415
TatI	WGTACW	1 cut(s)	23
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	1 cut(s)	52
TseFI	GTSAC	2 cut(s)	43, 193
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	2 cut(s)	43, 193
TspDTI	ATGAA	2 cut(s)	98, 135
XapI	RAATTY	1 cut(s)	72
XceI	RCATGY	3 cut(s)	20, 402, 450
XspI	CTAG	2 cut(s)	68, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.