Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006993

Physical Location & Seq

Genomic Coordinates Forward (+)

49117751 .. 49121878

Gene Structure 4128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39285

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTATGTGTGTGTGTCTTTTTACGCCGAGTTTATGCACCTCCCGAGGAAGAGGTTCACTGATTTTGCTGCTGTTAGACAGGAGATATCTGATGAGACTGATAGAGAGACCGGCAGGACCAAGGCGATTTCGAGTGTGCCAATCCATCTTAGCATCTACTCCCCTAATGTTGTGAACTTGGCACTAATAGATCTTCCTGGACTCACAAAGGTAGCTGGTCAGGCAAAGAGCATAGTGGAGGACATTGAGAACATGGTTAGGGGCTTCATTGAGAAGCCCAACTGTATCATTATGGCTATTTCCCCTGCCAACCAAGATCTTGCTACGTCTGATGCAATTAAGATCTCTTGTGAAGTAGATCCCAAAGGTGAGAGGACATTTGGAGTTCTCACAAAGATTGATCTTATGGACCAAGGTACAAATGCAGTCGATATTTTGGAAGGAAGATCATATAGACTTCAGTTCCCTTGGATTGGTGTTGTGAATCGCTCCCAAGCTGATATAAACAAGAGTGTTGATATGATTGCTGCTAGGCGCAGGGAGCGTGAATATTTTGCTAATAGCCCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

190

Amino Acids

21.3

Weight (kDa)

5.53

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	16 - 133	2.9e-29	Dynamin family
Dynamin_M	PF01031	141 - 189	9.4e-14	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61760 AT3G61760 AT3G61760
fragaria_vesca	FvH4_7g16440
malus_domestica	MD01G1080800.v1.1 MD07G1149800.v1.1
prunus_persica	Prupe.2G188500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359481 RchiOBHm_Chr4g0423491 RchiOBHm_Chr5g0037431 RchiOBHm_Chr6g0269891
rosa_laevigata	RLG00000012393 RLG00000023120 RLG00000027866
rosa_multiflora	Rmu_sc0002556.1_g000007 Rmu_sc0006895.1_g000006
rosa_roxburghii	Rroxscaffold_4G00296970
rosa_rugosa	Rorug01G0271500
rosa_samantha	Rh1AG285000 Rh1BG251100 Rh1CG268900 Rh1DG280200 Rh2BG207000 Rh4DG017500
rosa_wichuraiana	Rw1G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	2 cut(s)	215, 497
AluI	AGCT	2 cut(s)	215, 497
Alw26I	GTCTC	2 cut(s)	89, 101
AlwI	GGATC	1 cut(s)	353
Ama87I	CYCGRG	2 cut(s)	43, 566
ApeKI	GCWGC	2 cut(s)	68, 527
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	2 cut(s)	117, 409
AsuHPI	GGTGA	1 cut(s)	380
AvaI	CYCGRG	2 cut(s)	43, 566
AvaII	GGWCC	2 cut(s)	117, 409
BbvI	GCAGC	2 cut(s)	55, 514
BccI	CCATC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	89, 101
BfaI	CTAG	1 cut(s)	531
BglII	AGATCT	3 cut(s)	190, 316, 342
BisI	GCNGC	2 cut(s)	69, 528
BlsI	GCNGC	2 cut(s)	70, 529
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	2 cut(s)	117, 409
BmeT110I	CYCGRG	2 cut(s)	43, 566
BmgT120I	GGNCC	2 cut(s)	117, 409
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	162, 322
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	44, 120, 412, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse118I	RCCGGY	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	4 cut(s)	44, 120, 412, 467
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	55, 514
BsiHKCI	CYCGRG	2 cut(s)	43, 566
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	2 cut(s)	89, 101
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	2 cut(s)	43, 566
Bsp143I	GATC	6 cut(s)	190, 316, 342, 358, 400, 446
BspPI	GGATC	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	4 cut(s)	44, 120, 412, 467
BssMI	GATC	6 cut(s)	190, 316, 342, 358, 400, 446
BssT1I	CCWWGG	3 cut(s)	120, 412, 467
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	6 cut(s)	193, 319, 345, 361, 403, 449
BstMAI	GTCTC	2 cut(s)	89, 101
BstMBI	GATC	6 cut(s)	190, 316, 342, 358, 400, 446
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 541
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	55, 514
BstX2I	RGATCY	4 cut(s)	190, 316, 342, 358
BstYI	RGATCY	4 cut(s)	190, 316, 342, 358
BtsIMutI	CAGTG	1 cut(s)	57
CfoI	GCGC	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	117, 409
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	6 cut(s)	215, 264, 277, 296, 497, 564
CviKI_1	RGCY	6 cut(s)	215, 264, 277, 296, 497, 564
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	6 cut(s)	192, 318, 344, 360, 402, 448
DpnII	GATC	6 cut(s)	190, 316, 342, 358, 400, 446
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	3 cut(s)	120, 412, 467
Eco31I	GGTCTC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	117, 409
Eco57I	CTGAAG	1 cut(s)	443
Eco88I	CYCGRG	2 cut(s)	43, 566
EcoRII	CCWGG	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	87
EcoT14I	CCWWGG	3 cut(s)	120, 412, 467
ErhI	CCWWGG	3 cut(s)	120, 412, 467
FaeI	CATG	1 cut(s)	256
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	69, 528
Fsp4HI	GCNGC	2 cut(s)	69, 528
FspBI	CTAG	1 cut(s)	531
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	2 cut(s)	69, 528
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HinfI	GANTC	2 cut(s)	201, 484
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	57, 175
Hpy188I	TCNGA	2 cut(s)	91, 331
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	2 cut(s)	57, 175
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	3 cut(s)	37, 335, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 541
HpyF3I	CTNAG	1 cut(s)	149
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	535
Kzo9I	GATC	6 cut(s)	190, 316, 342, 358, 400, 446
LmnI	GCTCC	2 cut(s)	494, 541
LpnPI	CCDG	9 cut(s)	65, 100, 124, 183, 201, 206, 210, 318, 523
Lsp1109I	GCAGC	2 cut(s)	55, 514
LweI	GCATC	2 cut(s)	162, 322
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	1 cut(s)	326
MalI	GATC	6 cut(s)	192, 318, 344, 360, 402, 448
MboI	GATC	6 cut(s)	190, 316, 342, 358, 400, 446
MboII	GAAGA	3 cut(s)	61, 185, 456
MflI	RGATCY	4 cut(s)	190, 316, 342, 358
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	5 cut(s)	39, 45, 50, 232, 366
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	1 cut(s)	339
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	221, 541
NdeII	GATC	6 cut(s)	190, 316, 342, 358, 400, 446
NlaIII	CATG	1 cut(s)	256
NmeAIII	GCCGAG	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	484
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	70, 529
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspPI	GGNCC	2 cut(s)	117, 409
PsuI	RGATCY	4 cut(s)	190, 316, 342, 358
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	69, 528
Sau3AI	GATC	6 cut(s)	190, 316, 342, 358, 400, 446
Sau96I	GGNCC	2 cut(s)	117, 409
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	8 cut(s)	42, 56, 213, 217, 329, 370, 418, 499
SfaNI	GCATC	2 cut(s)	162, 322
SinI	GGWCC	2 cut(s)	117, 409
Sse9I	AATT	1 cut(s)	336
SspI	AATATT	1 cut(s)	551
SspMI	CTAG	1 cut(s)	531
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	3 cut(s)	120, 412, 467
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	2 cut(s)	131, 429
TasI	AATT	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	2 cut(s)	68, 527
TspDTI	ATGAA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	117, 409
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.