Rorug01G0271500
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006993
Physical Location & Seq
Forward (+)
38385021 .. 38385485
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0271500.1

Sequence Viewer

Length: 465 bp
ATGAAGTACCACTTTTGTTCTTCAGGTGCTTTTCTCTTCATCTTCATCATTCTTGTGACTATCTGTTTGTGCATTGAAGCTCGAACCTACAATCCAAGTGGCAAAATAGTCGGTAAAATGCCTCCGATGTCCGAGCGTACAAAAGCAACCTTGACGATCAACAGCTTCGAGAAAGGTGGTGGGGGTGGTGGACCGTCCGAATGTGACGGTAAATACCACTCCAATAACACCCCGATCGCGGCATTGTCCACCAGGTGGTATAACAATGGGAAGAGGTGTTCAAACTACATTACCATATATGGTAATGGAAAGAGTGTGAAAGCCAAGGTGGTTGATGAGTGTGACTCAACAAGAGGATGTGATGATGACATCGTTGATGCCTCTAAAGCTGTTTGGAAGGCCTTGGGAGTTAAGGAAAGCAGCCGCGACTGGGGTGAAATGAAAATATTCTGGTCTGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

154

Amino Acids

16.89

Weight (kDa)

8.65

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 38 - 154 2e-31 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 255
AccII CGCG 2 cut(s) 239, 426
AciI CCGC 2 cut(s) 239, 424
AcuI CTGAAG 1 cut(s) 6
AdeI CACNNNGTG 1 cut(s) 255
AfaI GTAC 2 cut(s) 8, 139
AfiI CCNNNNNNNGG 3 cut(s) 238, 255, 430
AgsI TTSAA 2 cut(s) 77, 282
AjnI CCWGG 1 cut(s) 251
AloI GAACNNNNNNTCC 4 cut(s) 76, 108, 262, 294
AluBI AGCT 3 cut(s) 80, 165, 389
AluI AGCT 3 cut(s) 80, 165, 389
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 1 cut(s) 420
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
Asp700I GAANNNNTTC 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 446
AvaII GGWCC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 432
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 1 cut(s) 253
BisI GCNGC 3 cut(s) 240, 421, 424
BlsI GCNGC 3 cut(s) 241, 422, 425
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 253
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 367, 448
BmuI ACTGGG 1 cut(s) 439
BplI GAGNNNNNCTC 2 cut(s) 329, 361
BsaJI CCNNGG 2 cut(s) 324, 402
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 255, 430
Bse1I ACTGG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 324, 402
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 3 cut(s) 238, 255, 430
BseNI ACTGG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 432
Bsh1236I CGCG 2 cut(s) 239, 426
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 401
BsiEI CGRYCG 1 cut(s) 237
BslI CCNNNNNNNGG 3 cut(s) 238, 255, 430
BsnI GGCC 1 cut(s) 401
Bsp143I GATC 2 cut(s) 156, 234
BspACI CCGC 2 cut(s) 239, 424
BspANI GGCC 1 cut(s) 401
BspFNI CGCG 2 cut(s) 239, 426
BsrI ACTGG 1 cut(s) 434
BssECI CCNNGG 2 cut(s) 324, 402
BssMI GATC 2 cut(s) 156, 234
BssT1I CCWWGG 2 cut(s) 324, 402
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 195, 209
Bst6I CTCTTC 2 cut(s) 41, 266
BstF5I GGATG 1 cut(s) 362
BstFNI CGCG 2 cut(s) 239, 426
BstKTI GATC 2 cut(s) 159, 237
BstMBI GATC 2 cut(s) 156, 234
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 2 cut(s) 239, 426
BstV1I GCAGC 1 cut(s) 432
BsuRI GGCC 1 cut(s) 401
BtsCI GGATG 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 191
CsiI ACCWGGT 1 cut(s) 251
Csp6I GTAC 2 cut(s) 7, 138
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviJI RGCY 6 cut(s) 80, 165, 323, 389, 401, 423
CviKI_1 RGCY 6 cut(s) 80, 165, 323, 389, 401, 423
CviQI GTAC 2 cut(s) 7, 138
DpnI GATC 2 cut(s) 158, 236
DpnII GATC 2 cut(s) 156, 234
DraIII CACNNNGTG 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 41, 266
EarI CTCTTC 2 cut(s) 41, 266
Eco130I CCWWGG 2 cut(s) 324, 402
Eco147I AGGCCT 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 2 cut(s) 324, 402
ErhI CCWWGG 2 cut(s) 324, 402
FaiI YATR 4 cut(s) 261, 296, 298, 300
FalI AAGNNNNNCTT 1 cut(s) 28
Fnu4HI GCNGC 3 cut(s) 240, 421, 424
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 3 cut(s) 240, 421, 424
GluI GCNGC 3 cut(s) 240, 421, 424
HaeIII GGCC 1 cut(s) 401
HinfI GANTC 1 cut(s) 344
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 2 cut(s) 191, 249
Hpy188I TCNGA 4 cut(s) 126, 133, 199, 457
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 191, 249
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 2 cut(s) 195, 209
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
Kzo9I GATC 2 cut(s) 156, 234
LpnPI CCDG 5 cut(s) 9, 238, 265, 415, 436
Lsp1109I GCAGC 1 cut(s) 432
LweI GCATC 2 cut(s) 367, 448
MabI ACCWGGT 1 cut(s) 251
MaeIII GTNAC 3 cut(s) 55, 203, 341
MalI GATC 2 cut(s) 158, 236
MboI GATC 2 cut(s) 156, 234
MboII GAAGA 4 cut(s) 12, 28, 34, 283
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 4 cut(s) 132, 267, 347, 391
MroXI GAANNNNTTC 1 cut(s) 446
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 2 cut(s) 239, 426
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 2 cut(s) 156, 234
NmuCI GTSAC 3 cut(s) 55, 203, 341
PceI AGGCCT 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 446
PflMI CCANNNNNTGG 1 cut(s) 255
PkrI GCNGC 3 cut(s) 241, 422, 425
Ple19I CGATCG 1 cut(s) 237
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspPI GGNCC 1 cut(s) 191
PvuI CGATCG 1 cut(s) 237
RsaI GTAC 2 cut(s) 8, 139
RsaNI GTAC 2 cut(s) 7, 138
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 3 cut(s) 240, 421, 424
Sau3AI GATC 2 cut(s) 156, 234
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 253
SexAI ACCWGGT 1 cut(s) 251
SfaNI GCATC 2 cut(s) 367, 448
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 53
SseBI AGGCCT 1 cut(s) 401
SsiI CCGC 2 cut(s) 239, 424
SspI AATATT 1 cut(s) 447
StuI AGGCCT 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 2 cut(s) 324, 402
TaaI ACNGT 2 cut(s) 195, 209
TaqI TCGA 2 cut(s) 82, 168
TauI GCSGC 2 cut(s) 242, 426
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseFI GTSAC 3 cut(s) 55, 203, 341
TseI GCWGC 1 cut(s) 420
Tsp45I GTSAC 3 cut(s) 55, 203, 341
TspDTI ATGAA 4 cut(s) 17, 28, 34, 455
Van91I CCANNNNNTGG 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.