Rh4DG017500
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0006993
Physical Location & Seq
Reverse (-)
2762449 .. 2781647
19199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG017500.1

Sequence Viewer

Length: 363 bp
ATGGAACCCAACTGTATCATTCTGGGTATTTCCCCTGCCAACCAAGATCTTGCTACGTCTGATGCAATTAAGATCTCTCGTGAAGTAGATCCCAAAGGTGAGAGGACATTTGGAGTTCTCACAAAGATTGATCTTATGGACCAAGGTACAAATTCAGTCGATATTTTGGAAGGAAGATCATATAGATCTCAGTTCCCTTGGATTGGTGTTGTGAATCGCTCCCAAGCTGATATAAACAAGAGTGTTGATATGATTGCTGCTAGGCGCAGGGAGCGTGAATATTTTGCTAATAGCCCCGAGTACAAGCATCTTGCGAGCAAGAGGGGATCTGAGCATTTAGGAAGGTATATGCATTATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

120

Amino Acids

13.62

Weight (kDa)

7.89

Isoelectric Point (pI)

57.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 2 - 43 2.1e-09 Dynamin family
Dynamin_M PF01031 53 - 115 8.3e-17 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 83, 334
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 2 cut(s) 148, 302
AfiI CCNNNNNNNGG 1 cut(s) 203
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
AlwI GGATC 2 cut(s) 83, 334
Ama87I CYCGRG 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 151
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 1 cut(s) 139
BauI CACGAG 1 cut(s) 78
BbvI GCAGC 1 cut(s) 244
BfaI CTAG 1 cut(s) 261
BglII AGATCT 3 cut(s) 46, 72, 185
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 52, 316
BsaJI CCNNGG 2 cut(s) 142, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 142, 197
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 203, 321
BseXI GCAGC 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 296
Bsp143I GATC 7 cut(s) 46, 72, 88, 130, 176, 185, 326
BspCNI CTCAG 2 cut(s) 202, 322
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 83, 334
BssECI CCNNGG 2 cut(s) 142, 197
BssMI GATC 7 cut(s) 46, 72, 88, 130, 176, 185, 326
BssSI CACGAG 1 cut(s) 78
BssT1I CCWWGG 2 cut(s) 142, 197
Bst2BI CACGAG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 2 cut(s) 189, 330
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 7 cut(s) 49, 75, 91, 133, 179, 188, 329
BstMBI GATC 7 cut(s) 46, 72, 88, 130, 176, 185, 326
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 5 cut(s) 46, 72, 88, 185, 326
BstYI RGATCY 5 cut(s) 46, 72, 88, 185, 326
Cac8I GCNNGC 1 cut(s) 316
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 147, 301
CviJI RGCY 2 cut(s) 227, 294
CviKI_1 RGCY 2 cut(s) 227, 294
CviQI GTAC 2 cut(s) 147, 301
DdeI CTNAG 2 cut(s) 189, 330
DpnI GATC 7 cut(s) 48, 74, 90, 132, 178, 187, 328
DpnII GATC 7 cut(s) 46, 72, 88, 130, 176, 185, 326
Eco130I CCWWGG 2 cut(s) 142, 197
Eco47I GGWCC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 296
EcoT14I CCWWGG 2 cut(s) 142, 197
EcoT22I ATGCAT 1 cut(s) 354
ErhI CCWWGG 2 cut(s) 142, 197
FaiI YATR 8 cut(s) 137, 181, 183, 233, 251, 348, 350, 357
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 266
GluI GCNGC 1 cut(s) 258
HhaI GCGC 1 cut(s) 267
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 1 cut(s) 214
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 61, 331
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 164, 336
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 2 cut(s) 65, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 2 cut(s) 189, 330
HpySE526I ACGT 1 cut(s) 56
HspAI GCGC 1 cut(s) 265
Kzo9I GATC 7 cut(s) 46, 72, 88, 130, 176, 185, 326
LmnI GCTCC 2 cut(s) 224, 271
LpnPI CCDG 3 cut(s) 8, 48, 253
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 2 cut(s) 52, 316
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 56
MalI GATC 7 cut(s) 48, 74, 90, 132, 178, 187, 328
MboI GATC 7 cut(s) 46, 72, 88, 130, 176, 185, 326
MboII GAAGA 1 cut(s) 186
MflI RGATCY 5 cut(s) 46, 72, 88, 185, 326
MluCI AATT 2 cut(s) 66, 151
MnlI CCTC 2 cut(s) 96, 315
Mph1103I ATGCAT 1 cut(s) 354
MseI TTAA 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeII GATC 7 cut(s) 46, 72, 88, 130, 176, 185, 326
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 354
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 139
PsuI RGATCY 5 cut(s) 46, 72, 88, 185, 326
RsaI GTAC 2 cut(s) 148, 302
RsaNI GTAC 2 cut(s) 147, 301
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 7 cut(s) 46, 72, 88, 130, 176, 185, 326
Sau96I GGNCC 1 cut(s) 139
SetI ASST 5 cut(s) 59, 100, 148, 229, 347
SfaNI GCATC 2 cut(s) 52, 316
SinI GGWCC 1 cut(s) 139
Sse9I AATT 2 cut(s) 66, 151
SspI AATATT 1 cut(s) 281
SspMI CTAG 1 cut(s) 261
StyI CCWWGG 2 cut(s) 142, 197
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 159
TasI AATT 2 cut(s) 66, 151
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseI GCWGC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 151
XspI CTAG 1 cut(s) 261
Zsp2I ATGCAT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.