Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006895.1

Orthogroup ID

OG0006993

Physical Location & Seq

Genomic Coordinates Reverse (-)

21312 .. 23713

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006895.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgatttgcttgcacttggcagttgtgaacttgacactaatagatcttcctggactcacaaaggtagttgtagagggtcaggcagagagcatactgcaggacattgcgaacatggttaggggcttcattgagaagcccaactgtatcattctggctatttcccctgccaaccaagatcttgctacgtctgatgcaattaagatctctcgtgaagtagatcccaaaggtgagaggacatttggagttctcacaaagattgatcttatggaccaaggtacaaatgcagtcgatcttgatataaacaagagtgttgatatgattgctgctaggcgcagggagcgtgaatattttgctaatagccccgagtacaagcatcttgcgagcaagatgggatctgagcatttaggaagtgggcagcaaagactcagaaatgatacacccaacagcaacttgacgaggtgtgcattgaggtggctgactatttgcaaactttgctatagatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

168

Amino Acids

18.71

Weight (kDa)

7.6

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61760 AT3G61760 AT3G61760
fragaria_vesca	FvH4_7g16440
malus_domestica	MD01G1080800.v1.1 MD07G1149800.v1.1
prunus_persica	Prupe.2G188500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359481 RchiOBHm_Chr4g0423491 RchiOBHm_Chr5g0037431 RchiOBHm_Chr6g0269891
rosa_laevigata	RLG00000012393 RLG00000023120 RLG00000027866
rosa_multiflora	Rmu_sc0002556.1_g000007 Rmu_sc0006895.1_g000006
rosa_roxburghii	Rroxscaffold_4G00296970
rosa_rugosa	Rorug01G0271500
rosa_samantha	Rh1AG285000 Rh1BG251100 Rh1CG268900 Rh1DG280200 Rh2BG207000 Rh4DG017500
rosa_wichuraiana	Rw1G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	212, 400
AfaI	GTAC	2 cut(s)	277, 368
AjnI	CCWGG	1 cut(s)	49
AlwI	GGATC	2 cut(s)	212, 400
Ama87I	CYCGRG	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	323, 415
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	268
BauI	CACGAG	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	310, 427
BccI	CCATC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	51
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	2 cut(s)	95, 496
BglII	AGATCT	3 cut(s)	43, 175, 201
BisI	GCNGC	2 cut(s)	324, 416
BlsI	GCNGC	2 cut(s)	325, 417
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	3 cut(s)	181, 382, 491
BsaJI	CCNNGG	1 cut(s)	271
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	387, 439
BseXI	GCAGC	2 cut(s)	310, 427
BsiHKCI	CYCGRG	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	362
Bsp143I	GATC	7 cut(s)	43, 175, 201, 217, 259, 289, 392
BspCNI	CTCAG	2 cut(s)	388, 438
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	2 cut(s)	212, 400
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	7 cut(s)	43, 175, 201, 217, 259, 289, 392
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	271
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	11, 382
BstDEI	CTNAG	2 cut(s)	396, 425
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	7 cut(s)	46, 178, 204, 220, 262, 292, 395
BstMBI	GATC	7 cut(s)	43, 175, 201, 217, 259, 289, 392
BstMWI	GCNNNNNNNGC	3 cut(s)	337, 492, 501
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	2 cut(s)	95, 496
BstV1I	GCAGC	2 cut(s)	310, 427
BstX2I	RGATCY	5 cut(s)	43, 175, 201, 217, 392
BstYI	RGATCY	5 cut(s)	43, 175, 201, 217, 392
Cac8I	GCNNGC	2 cut(s)	11, 382
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	276, 367
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	5 cut(s)	123, 136, 155, 360, 475
CviKI_1	RGCY	5 cut(s)	123, 136, 155, 360, 475
CviQI	GTAC	2 cut(s)	276, 367
DdeI	CTNAG	2 cut(s)	396, 425
DpnI	GATC	7 cut(s)	45, 177, 203, 219, 261, 291, 394
DpnII	GATC	7 cut(s)	43, 175, 201, 217, 259, 289, 392
Eco130I	CCWWGG	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	115
FaiI	YATR	6 cut(s)	92, 113, 266, 299, 317, 498
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	324, 416
Fsp4HI	GCNGC	2 cut(s)	324, 416
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	2 cut(s)	324, 416
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	2 cut(s)	54, 423
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	190, 397, 428
Hpy188III	TCNNGA	2 cut(s)	209, 293
Hpy8I	GTNNAC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	6 cut(s)	13, 97, 194, 284, 464, 486
HpyF10VI	GCNNNNNNNGC	3 cut(s)	337, 492, 501
HpyF3I	CTNAG	2 cut(s)	396, 425
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	7 cut(s)	43, 175, 201, 217, 259, 289, 392
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	7 cut(s)	36, 63, 65, 83, 137, 177, 319
Lsp1109I	GCAGC	2 cut(s)	310, 427
LweI	GCATC	3 cut(s)	181, 382, 491
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	185
MalI	GATC	7 cut(s)	45, 177, 203, 219, 261, 291, 394
MboI	GATC	7 cut(s)	43, 175, 201, 217, 259, 289, 392
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	5 cut(s)	43, 175, 201, 217, 392
MluCI	AATT	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	48, 417
MnlI	CCTC	4 cut(s)	67, 225, 450, 462
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	3 cut(s)	337, 492, 501
NdeII	GATC	7 cut(s)	43, 175, 201, 217, 259, 289, 392
NlaIII	CATG	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	325, 417
PleI	GAGTC	2 cut(s)	48, 417
PpsI	GAGTC	2 cut(s)	48, 417
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	5 cut(s)	43, 175, 201, 217, 392
RsaI	GTAC	2 cut(s)	277, 368
RsaNI	GTAC	2 cut(s)	276, 367
RseI	CAYNNNNRTG	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	324, 416
Sau3AI	GATC	7 cut(s)	43, 175, 201, 217, 259, 289, 392
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	2 cut(s)	48, 417
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	6 cut(s)	66, 188, 229, 277, 461, 473
SfaNI	GCATC	3 cut(s)	181, 382, 491
SfcI	CTRYAG	2 cut(s)	95, 496
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	469
Sse9I	AATT	1 cut(s)	195
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	288
TasI	AATT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	366
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseI	GCWGC	2 cut(s)	323, 415
TspDTI	ATGAA	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	268
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.