RchiOBHm_Chr5g0037431
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
31880193 .. 31883875
3683 bp
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UTR
Exon/CDS
Intron
PRQ31614

Sequence Viewer

Length: 564 bp
ATGTATGTGTGTGTGTCTTTTTACTCCGAGTTTATGCACCTCCCGAGGAAGAGGTTCACTGATTTTGCTGCTGTTAGACAGGAGATATCTGATGAGACTGATAGAGAGACCGGCAGGACCAAGGCGATTTCGAGTGTGCCAATCCATCTTAGCATCTACTCCCCTAATGTTGTGAACTTAGCACTAATAGATCTTCCTGGACTCACAAAGGGTCAGGCAGAGAGCATAGTAGAGGACATTGAGAACATGGTTAGGGGCTTCATTGAGAAGCCCAACTGTATCATTATGGCTATTTCCCCTGCCAACCAAGATCTTGCTACGTCTGATGCAATTAAGATCTCTTGTGAAGTAGATCCCAAAGGTGAGAGGACATTTGGAGTTCTCACAAAGATTGATCTTATGGACCAAGGTACAAATGCAGTCGATATTTTGGAAGGAAGATATAGACTTCAGTTCCCTTGGATTGGTGTTGTGAATCGCTCCCAAGCTGATATAAACAAGAGTGTTGATATGATTGCTGCTAGGCGCAGGGAGCGTGAATATTTTGCTAATAGCCCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

187

Amino Acids

21.06

Weight (kDa)

5.19

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 16 - 131 1.4e-28 Dynamin family
Dynamin_M PF01031 139 - 186 4e-11 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 434
AfaI GTAC 1 cut(s) 412
AfiI CCNNNNNNNGG 1 cut(s) 464
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 1 cut(s) 488
AluI AGCT 1 cut(s) 488
Alw26I GTCTC 2 cut(s) 89, 101
AlwI GGATC 1 cut(s) 347
Ama87I CYCGRG 2 cut(s) 43, 557
ApeKI GCWGC 2 cut(s) 68, 518
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 528
AspS9I GGNCC 2 cut(s) 117, 403
AsuHPI GGTGA 1 cut(s) 374
AvaI CYCGRG 2 cut(s) 43, 557
AvaII GGWCC 2 cut(s) 117, 403
BbvI GCAGC 2 cut(s) 55, 505
BccI CCATC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 89, 101
BfaI CTAG 1 cut(s) 522
BglII AGATCT 3 cut(s) 190, 310, 336
BisI GCNGC 2 cut(s) 69, 519
BlsI GCNGC 2 cut(s) 70, 520
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 2 cut(s) 117, 403
BmeT110I CYCGRG 2 cut(s) 43, 557
BmgT120I GGNCC 2 cut(s) 117, 403
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 162, 316
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 4 cut(s) 44, 120, 406, 458
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 1 cut(s) 110
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 4 cut(s) 44, 120, 406, 458
BseLI CCNNNNNNNGG 1 cut(s) 464
BseXI GCAGC 2 cut(s) 55, 505
BsiHKCI CYCGRG 2 cut(s) 43, 557
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 2 cut(s) 89, 101
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 2 cut(s) 43, 557
Bsp143I GATC 5 cut(s) 190, 310, 336, 352, 394
BspPI GGATC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 4 cut(s) 44, 120, 406, 458
BssMI GATC 5 cut(s) 190, 310, 336, 352, 394
BssT1I CCWWGG 3 cut(s) 120, 406, 458
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 149, 178
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 5 cut(s) 193, 313, 339, 355, 397
BstMAI GTCTC 2 cut(s) 89, 101
BstMBI GATC 5 cut(s) 190, 310, 336, 352, 394
BstMWI GCNNNNNNNGC 1 cut(s) 532
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 55, 505
BstX2I RGATCY 4 cut(s) 190, 310, 336, 352
BstYI RGATCY 4 cut(s) 190, 310, 336, 352
BtsIMutI CAGTG 1 cut(s) 57
CfoI GCGC 1 cut(s) 528
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 117, 403
Csp6I GTAC 1 cut(s) 411
CviAII CATG 1 cut(s) 247
CviJI RGCY 5 cut(s) 258, 271, 290, 488, 555
CviKI_1 RGCY 5 cut(s) 258, 271, 290, 488, 555
CviQI GTAC 1 cut(s) 411
DdeI CTNAG 2 cut(s) 149, 178
DpnI GATC 5 cut(s) 192, 312, 338, 354, 396
DpnII GATC 5 cut(s) 190, 310, 336, 352, 394
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 3 cut(s) 120, 406, 458
Eco31I GGTCTC 1 cut(s) 101
Eco32I GATATC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 117, 403
Eco57I CTGAAG 1 cut(s) 434
Eco88I CYCGRG 2 cut(s) 43, 557
EcoRII CCWGG 1 cut(s) 196
EcoRV GATATC 1 cut(s) 87
EcoT14I CCWWGG 3 cut(s) 120, 406, 458
ErhI CCWWGG 3 cut(s) 120, 406, 458
FaeI CATG 1 cut(s) 250
FaiI YATR 9 cut(s) 6, 35, 227, 248, 287, 401, 444, 494, 512
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 69, 519
Fsp4HI GCNGC 2 cut(s) 69, 519
FspBI CTAG 1 cut(s) 522
GlaI GCGC 1 cut(s) 527
GluI GCNGC 2 cut(s) 69, 519
HapII CCGG 1 cut(s) 111
HhaI GCGC 1 cut(s) 528
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HinfI GANTC 2 cut(s) 201, 475
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 2 cut(s) 57, 175
Hpy188I TCNGA 3 cut(s) 28, 91, 325
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 2 cut(s) 57, 175
HpyAV CCTTC 1 cut(s) 428
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 37, 329, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 532
HpyF3I CTNAG 2 cut(s) 149, 178
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 1 cut(s) 526
Kzo9I GATC 5 cut(s) 190, 310, 336, 352, 394
LmnI GCTCC 2 cut(s) 485, 532
LpnPI CCDG 8 cut(s) 65, 100, 124, 183, 200, 210, 312, 514
Lsp1109I GCAGC 2 cut(s) 55, 505
LweI GCATC 2 cut(s) 162, 316
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 320
MalI GATC 5 cut(s) 192, 312, 338, 354, 396
MboI GATC 5 cut(s) 190, 310, 336, 352, 394
MboII GAAGA 3 cut(s) 61, 185, 450
MflI RGATCY 4 cut(s) 190, 310, 336, 352
MluCI AATT 1 cut(s) 330
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 5 cut(s) 39, 45, 50, 226, 360
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 1 cut(s) 333
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 532
NdeII GATC 5 cut(s) 190, 310, 336, 352, 394
NlaIII CATG 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 475
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 2 cut(s) 70, 520
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspPI GGNCC 2 cut(s) 117, 403
PsuI RGATCY 4 cut(s) 190, 310, 336, 352
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 69, 519
Sau3AI GATC 5 cut(s) 190, 310, 336, 352, 394
Sau96I GGNCC 2 cut(s) 117, 403
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 198
SetI ASST 6 cut(s) 42, 56, 323, 364, 412, 490
SfaNI GCATC 2 cut(s) 162, 316
SinI GGWCC 2 cut(s) 117, 403
Sse9I AATT 1 cut(s) 330
SspI AATATT 1 cut(s) 542
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 3 cut(s) 120, 406, 458
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 323
TaqI TCGA 2 cut(s) 131, 423
TasI AATT 1 cut(s) 330
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 1 cut(s) 64
TseI GCWGC 2 cut(s) 68, 518
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 117, 403
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.