RLG00000023120
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006993
Physical Location & Seq
Reverse (-)
18459102 .. 18461756
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023120

Sequence Viewer

Length: 375 bp
ATGGATCGCCGAGGAGGCCGATCTCGACCATCACTCACATCCTCGCCTCCGACGACATCGTTCTGGAGAATCTCGCCGACGTTGAAAAACCGGCATGGAAAAACCAAAGGTGAGAGGACATTTAGAGTTCTCACAAAGATTGATCTTATGGACCAAGGTACAAATGCAGTCGATATTTTGGAAGGAAGATCATATAGACTTCAGTTCCCTTGGATTGGTGTTGTGAATCGCTGCCAAGTTGATATAAACAAGAGTGTTGATATGATTGCTGCTAGGCGCAAGGAGCGTGAATATTTTGCTAATAGCCTCGAGTACAAGCGTCTTGCGAGCAAGATGGGATCTGAGCATTTAGGAAGGTATATGCATTATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

125

Amino Acids

14.41

Weight (kDa)

10.45

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 55 - 119 1.7e-17 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 12, 346
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 2 cut(s) 160, 314
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 85
AlwI GGATC 2 cut(s) 12, 346
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 231, 269
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 218, 256
BccI CCATC 2 cut(s) 37, 328
BfaI CTAG 1 cut(s) 273
BglI GCCNNNNNGGC 1 cut(s) 15
BisI GCNGC 2 cut(s) 232, 270
BlsI GCNGC 2 cut(s) 233, 271
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 10, 154, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse118I RCCGGY 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 10, 154, 209
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 218, 256
BshFI GGCC 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 215
BsnI GGCC 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 308
Bsp143I GATC 5 cut(s) 4, 20, 142, 188, 338
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 334
BspPI GGATC 2 cut(s) 12, 346
BsrFI RCCGGY 1 cut(s) 90
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 3 cut(s) 10, 154, 209
BssMI GATC 5 cut(s) 4, 20, 142, 188, 338
BssT1I CCWWGG 2 cut(s) 154, 209
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 5 cut(s) 7, 23, 145, 191, 341
BstMBI GATC 5 cut(s) 4, 20, 142, 188, 338
BstMWI GCNNNNNNNGC 2 cut(s) 15, 283
BstV1I GCAGC 2 cut(s) 218, 256
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BsuRI GGCC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 1 cut(s) 308
Csp6I GTAC 2 cut(s) 159, 313
CviAII CATG 1 cut(s) 95
CviJI RGCY 2 cut(s) 18, 306
CviKI_1 RGCY 2 cut(s) 18, 306
CviQI GTAC 2 cut(s) 159, 313
DdeI CTNAG 1 cut(s) 342
DpnI GATC 5 cut(s) 6, 22, 144, 190, 340
DpnII GATC 5 cut(s) 4, 20, 142, 188, 338
Eco130I CCWWGG 2 cut(s) 154, 209
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 308
EcoT14I CCWWGG 2 cut(s) 154, 209
EcoT22I ATGCAT 1 cut(s) 366
ErhI CCWWGG 2 cut(s) 154, 209
FaeI CATG 1 cut(s) 98
FaiI YATR 9 cut(s) 96, 149, 193, 195, 245, 263, 360, 362, 369
FatI CATG 1 cut(s) 94
Fnu4HI GCNGC 2 cut(s) 232, 270
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 232, 270
FspBI CTAG 1 cut(s) 273
GlaI GCGC 1 cut(s) 278
GluI GCNGC 2 cut(s) 232, 270
GsuI CTGGAG 1 cut(s) 85
HaeIII GGCC 1 cut(s) 18
HapII CCGG 1 cut(s) 91
HgaI GACGC 1 cut(s) 308
HhaI GCGC 1 cut(s) 279
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 2 cut(s) 69, 226
HpaII CCGG 1 cut(s) 91
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 2 cut(s) 51, 343
Hpy188III TCNNGA 2 cut(s) 24, 64
Hpy99I CGWCG 2 cut(s) 55, 82
HpyAV CCTTC 2 cut(s) 176, 348
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 167, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 283
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 5 cut(s) 4, 20, 142, 188, 338
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 2 cut(s) 49, 104
Lsp1109I GCAGC 2 cut(s) 218, 256
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 80
MalI GATC 5 cut(s) 6, 22, 144, 190, 340
MboI GATC 5 cut(s) 4, 20, 142, 188, 338
MboII GAAGA 1 cut(s) 198
MflI RGATCY 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 6 cut(s) 5, 8, 52, 57, 108, 317
Mph1103I ATGCAT 1 cut(s) 366
MspI CCGG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 15, 283
NdeII GATC 5 cut(s) 4, 20, 142, 188, 338
NlaIII CATG 1 cut(s) 98
NmeAIII GCCGAG 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 366
PaeR7I CTCGAG 1 cut(s) 308
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PfeI GAWTC 2 cut(s) 69, 226
PkrI GCNGC 2 cut(s) 233, 271
PspPI GGNCC 1 cut(s) 151
PspXI VCTCGAGB 1 cut(s) 308
PsuI RGATCY 1 cut(s) 338
RsaI GTAC 2 cut(s) 160, 314
RsaNI GTAC 2 cut(s) 159, 313
SatI GCNGC 2 cut(s) 232, 270
Sau3AI GATC 5 cut(s) 4, 20, 142, 188, 338
Sau96I GGNCC 1 cut(s) 151
SetI ASST 4 cut(s) 83, 112, 160, 359
Sfr274I CTCGAG 1 cut(s) 308
SinI GGWCC 1 cut(s) 151
SlaI CTCGAG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SspI AATATT 1 cut(s) 293
SspMI CTAG 1 cut(s) 273
StyI CCWWGG 2 cut(s) 154, 209
TaiI ACGT 1 cut(s) 83
TaqI TCGA 3 cut(s) 25, 171, 309
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 2 cut(s) 69, 226
TseI GCWGC 2 cut(s) 231, 269
VpaK11BI GGWCC 1 cut(s) 151
XhoI CTCGAG 1 cut(s) 308
XspI CTAG 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.