Rmu_sc0002556.1_g000007
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002556.1
Physical Location & Seq
Reverse (-)
33036 .. 38365
5330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002556.1_g000007.1.cds

Sequence Viewer

Length: 1680 bp
atggagaatctgatctcgctcgtgaacaaaatacagagagcatgcacagccctcggcgatcacggcgaagagagcgcaatgccgactctctgggactccctccccgccatcgccgtcgtcggcggccaggtattcgatctccgatcctccaccgccgtctcaatctcacattttcctcgttcaattctaatcgccgagtctttcttttgctttcgtagagctccggtaagtcgtcggtgctggagagcattgtcggcaaagacttcctacctcgcggctccgctgcataagatcgacgagggaagagaatacgccgagtttatgcacctcccgaggaagaggttcgctgattttgctgctgttagacaggagatatctgatgagactgacagagagaccggccggaccaaggcgatttcgagtgtgcctatccatcttagcatctactcccctaatgagggtcaggcagagagcatagtgcaggacattgagaacatggttaggggcttcattgagaagattttggaaggaagatcatatagacttcagttcccttggattggtgttgtgaatcgctcccaagctgatataaacaagagtgttgatatgattgctgctaggcgcagggagcgtgaatattttgctaatagccccgagtacaagcatcttgcgagcaagatgggatctgagcatttaggaagggtgctgtctaagcatttggaagttgtcatcaagtcccgaattccaggccttcagtctcttatcagcaaaactattggtgagctagaggcagaactaagccgacttgggaagcccattgcttctgatactggtggaaagttgtatgtaataatggaaatctctcgtacttttgatcagatattcaaagaacatcttgatggcgtgcgctctggtggtgataaagtttatggtgtgtttgacattcaatttccagctgctttgaagagattgcaatttgacaagtatctttcaatggaaaacattcgaaagctaattactgaggcagatggatatcaacctcatttaattgctcctgaacaaggataccgtcgcctcattgaatcttcattagtatgcatcaaaggtcctgcagaggcggctgttgatgctgttcatgccatattgaaggagctggctcagaagtctatcaatgcaacctcagaattaaagcagtatcccactttaagagtggaagttgggaatgcagcatttgaatcgctggataggatgaaagaagagagcaagaaagcaaccatgcagctagttgatatggagtgtggttacctcactgttgaatttttccgcaagcttcctcaggatattgaaaaggggggaaatccaacacactcactttttgacagatataacgattcctacctccggcgggttggaagcaatgtgttaaactatgtgaacatggtgtgctcaagtttaaggattgctattccaaagtctattgtctactgtcaagtacgagaagccaaacgcagcttactcgatcatttttttgctgagctgggttcaaaagagacaagacagttatctaagatgttggatgaggatccagcagtcatgcagcgtcgtaccagccttgcaaagaggctagagctgtacagaagtgctcaggcagagattgatgcagttgcttggtccaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

559

Amino Acids

63.18

Weight (kDa)

8.82

Isoelectric Point (pI)

52.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1482
AccII CGCG 1 cut(s) 275
AciI CCGC 8 cut(s) 105, 123, 153, 275, 281, 1118, 1324, 1405
AclWI GGATC 4 cut(s) 138, 691, 1577, 1590
AcoI YGGCCR 2 cut(s) 124, 400
AcsI RAATTY 2 cut(s) 741, 1316
AcuI CTGAAG 2 cut(s) 530, 737
AfaI GTAC 5 cut(s) 659, 868, 1494, 1606, 1634
AfiI CCNNNNNNNGG 7 cut(s) 409, 457, 458, 560, 1061, 1401, 1405
AjnI CCWGG 2 cut(s) 126, 745
Alw21I GWGCWC 3 cut(s) 223, 1448, 1645
Alw26I GTCTC 5 cut(s) 163, 377, 389, 762, 1544
AlwI GGATC 4 cut(s) 138, 691, 1577, 1590
Ama87I CYCGRG 2 cut(s) 331, 653
AoxI GGCC 3 cut(s) 124, 400, 748
ApeKI GCWGC 8 cut(s) 283, 356, 614, 956, 1226, 1279, 1509, 1597
ApoI RAATTY 2 cut(s) 741, 1316
Asp700I GAANNNNTTC 2 cut(s) 341, 1002
AspLEI GCGC 3 cut(s) 77, 624, 909
AspS9I GGNCC 3 cut(s) 405, 1106, 1671
AsuHPI GGTGA 2 cut(s) 791, 929
AsuII TTCGAA 1 cut(s) 1006
AvaI CYCGRG 2 cut(s) 331, 653
AvaII GGWCC 3 cut(s) 405, 1106, 1671
AxyI CCTNAGG 1 cut(s) 1335
BamHI GGATCC 1 cut(s) 1582
BanII GRGCYC 1 cut(s) 223
BauI CACGAG 1 cut(s) 20
Bbv12I GWGCWC 3 cut(s) 223, 1448, 1645
BbvI GCAGC 8 cut(s) 270, 343, 601, 943, 1238, 1291, 1521, 1609
BccI CCATC 5 cut(s) 116, 441, 673, 893, 1022
BceAI ACGGC 3 cut(s) 79, 98, 140
BcgI CGANNNNNNTGC 6 cut(s) 34, 68, 1218, 1252, 1498, 1532
BciT130I CCWGG 2 cut(s) 128, 747
BciVI GTATCC 2 cut(s) 1058, 1206
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 5 cut(s) 163, 377, 389, 762, 1544
BfaI CTAG 4 cut(s) 618, 785, 1283, 1625
BfmI CTRYAG 1 cut(s) 1110
BfuI GTATCC 2 cut(s) 1058, 1206
BlpI GCTNAGC 1 cut(s) 1533
Bme1390I CCNGG 2 cut(s) 128, 747
Bme18I GGWCC 3 cut(s) 405, 1106, 1671
BmeT110I CYCGRG 2 cut(s) 331, 653
BmgT120I GGNCC 3 cut(s) 405, 1106, 1671
BmiI GGNNCC 2 cut(s) 279, 1584
BmrFI CCNGG 2 cut(s) 128, 747
BmsI GCATC 5 cut(s) 450, 673, 1107, 1117, 1648
BpmI CTGGAG 1 cut(s) 262
Bpu10I CCTNAGC 1 cut(s) 1644
Bpu1102I GCTNAGC 1 cut(s) 1533
Bpu14I TTCGAA 1 cut(s) 1006
BpuEI CTTGAG 1 cut(s) 1432
BsaBI GATNNNNATC 2 cut(s) 1032, 1581
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 4 cut(s) 52, 332, 408, 554
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 7 cut(s) 409, 457, 458, 560, 1061, 1401, 1405
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 835
Bse21I CCTNAGG 1 cut(s) 1335
Bse3DI GCAATG 3 cut(s) 84, 816, 1423
Bse8I GATNNNNATC 2 cut(s) 1032, 1581
BseBI CCWGG 2 cut(s) 128, 747
BseDI CCNNGG 4 cut(s) 52, 332, 408, 554
BseGI GGATG 2 cut(s) 1254, 1582
BseJI GATNNNNATC 2 cut(s) 1032, 1581
BseLI CCNNNNNNNGG 7 cut(s) 409, 457, 458, 560, 1061, 1401, 1405
BseMI GCAATG 3 cut(s) 84, 816, 1423
BseMII CTCAG 7 cut(s) 678, 1011, 1172, 1194, 1349, 1524, 1658
BseNI ACTGG 1 cut(s) 835
BseX3I CGGCCG 1 cut(s) 400
BseXI GCAGC 8 cut(s) 270, 343, 601, 943, 1238, 1291, 1521, 1609
BseYI CCCAGC 1 cut(s) 1537
BsgI GTGCAG 1 cut(s) 500
Bsh1236I CGCG 1 cut(s) 275
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 3 cut(s) 126, 402, 750
BsiEI CGRYCG 1 cut(s) 403
BsiHKAI GWGCWC 3 cut(s) 223, 1448, 1645
BsiHKCI CYCGRG 2 cut(s) 331, 653
BsiSI CCGG 4 cut(s) 224, 399, 403, 1402
BslFI GGGAC 2 cut(s) 107, 721
BslI CCNNNNNNNGG 7 cut(s) 409, 457, 458, 560, 1061, 1401, 1405
BsmAI GTCTC 5 cut(s) 163, 377, 389, 762, 1544
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 107, 721
BsmI GAATGC 1 cut(s) 1228
BsnI GGCC 3 cut(s) 126, 402, 750
Bso31I GGTCTC 1 cut(s) 389
BsoBI CYCGRG 2 cut(s) 331, 653
Bsp119I TTCGAA 1 cut(s) 1006
Bsp1286I GDGCHC 3 cut(s) 223, 1448, 1645
Bsp1407I TGTACA 1 cut(s) 1632
Bsp1720I GCTNAGC 1 cut(s) 1533
BspACI CCGC 8 cut(s) 105, 123, 153, 275, 281, 1118, 1324, 1405
BspANI GGCC 3 cut(s) 126, 402, 750
BspCNI CTCAG 7 cut(s) 679, 1012, 1171, 1193, 1348, 1525, 1657
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 2 cut(s) 279, 1584
BspMAI CTGCAG 1 cut(s) 1114
BspPI GGATC 4 cut(s) 138, 691, 1577, 1590
BspT104I TTCGAA 1 cut(s) 1006
BspTNI GGTCTC 1 cut(s) 389
BsrDI GCAATG 3 cut(s) 84, 816, 1423
BsrFI RCCGGY 1 cut(s) 398
BsrGI TGTACA 1 cut(s) 1632
BsrI ACTGG 1 cut(s) 835
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 4 cut(s) 52, 332, 408, 554
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 2 cut(s) 408, 554
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 128, 747
Bst4CI ACNGT 4 cut(s) 1070, 1312, 1487, 1560
Bst6I CTCTTC 5 cut(s) 63, 298, 332, 959, 1251
BstAUI TGTACA 1 cut(s) 1632
BstBI TTCGAA 1 cut(s) 1006
BstC8I GCNNGC 5 cut(s) 43, 673, 905, 1155, 1328
BstEII GGTNACC 1 cut(s) 1301
BstENI CCTNNNNNAGG 1 cut(s) 1059
BstF5I GGATG 2 cut(s) 1254, 1582
BstFNI CGCG 1 cut(s) 275
BstHHI GCGC 3 cut(s) 77, 624, 909
BstMAI GTCTC 5 cut(s) 163, 377, 389, 762, 1544
BstMCI CGRYCG 1 cut(s) 403
BstNI CCWGG 2 cut(s) 128, 747
BstNSI RCATGY 1 cut(s) 45
BstPI GGTNACC 1 cut(s) 1301
BstSCI CCNGG 2 cut(s) 126, 745
BstSFI CTRYAG 1 cut(s) 1110
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 8 cut(s) 270, 343, 601, 943, 1238, 1291, 1521, 1609
BstX2I RGATCY 2 cut(s) 683, 1582
BstYI RGATCY 2 cut(s) 683, 1582
BstZI CGGCCG 1 cut(s) 400
Bsu36I CCTNAGG 1 cut(s) 1335
BsuI GTATCC 2 cut(s) 1058, 1206
BsuRI GGCC 3 cut(s) 126, 402, 750
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 1254, 1582
BtsIMutI CAGTG 1 cut(s) 1308
Cac8I GCNNGC 5 cut(s) 43, 673, 905, 1155, 1328
CfoI GCGC 3 cut(s) 77, 624, 909
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 3 cut(s) 405, 1106, 1671
CseI GACGC 1 cut(s) 1589
Csp6I GTAC 5 cut(s) 658, 867, 1493, 1605, 1633
CviAII CATG 6 cut(s) 42, 496, 1136, 1276, 1438, 1594
CviQI GTAC 5 cut(s) 658, 867, 1493, 1605, 1633
EaeI YGGCCR 2 cut(s) 124, 400
EagI CGGCCG 1 cut(s) 400
Eam1104I CTCTTC 5 cut(s) 63, 298, 332, 959, 1251
EarI CTCTTC 5 cut(s) 63, 298, 332, 959, 1251
Ecl136II GAGCTC 1 cut(s) 221
EclXI CGGCCG 1 cut(s) 400
Eco130I CCWWGG 2 cut(s) 408, 554
Eco147I AGGCCT 1 cut(s) 750
Eco24I GRGCYC 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 389
Eco32I GATATC 2 cut(s) 375, 1034
Eco47I GGWCC 3 cut(s) 405, 1106, 1671
Eco52I CGGCCG 1 cut(s) 400
Eco53kI GAGCTC 1 cut(s) 221
Eco57I CTGAAG 2 cut(s) 530, 737
Eco81I CCTNAGG 1 cut(s) 1335
Eco88I CYCGRG 2 cut(s) 331, 653
Eco91I GGTNACC 1 cut(s) 1301
EcoICRI GAGCTC 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 1059
EcoO109I RGGNCCY 1 cut(s) 1106
EcoO65I GGTNACC 1 cut(s) 1301
EcoRI GAATTC 1 cut(s) 741
EcoRII CCWGG 2 cut(s) 126, 745
EcoRV GATATC 2 cut(s) 375, 1034
EcoT14I CCWWGG 2 cut(s) 408, 554
EcoT22I ATGCAT 1 cut(s) 1100
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 2 cut(s) 408, 554
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 6 cut(s) 45, 499, 1139, 1279, 1441, 1597
FalI AAGNNNNNCTT 2 cut(s) 879, 911
FaqI GGGAC 2 cut(s) 107, 721
FatI CATG 6 cut(s) 41, 495, 1135, 1275, 1437, 1593
FauI CCCGC 2 cut(s) 112, 1398
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 1 cut(s) 1482
FokI GGATG 2 cut(s) 1261, 1589
FriOI GRGCYC 1 cut(s) 223
FspBI CTAG 4 cut(s) 618, 785, 1283, 1625
GlaI GCGC 3 cut(s) 76, 623, 908
GsaI CCCAGC 1 cut(s) 1541
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 3 cut(s) 126, 402, 750
HapII CCGG 4 cut(s) 224, 399, 403, 1402
HgaI GACGC 1 cut(s) 1589
HhaI GCGC 3 cut(s) 77, 624, 909
Hin1II CATG 6 cut(s) 45, 499, 1139, 1279, 1441, 1597
Hin6I GCGC 3 cut(s) 75, 622, 907
HinP1I GCGC 3 cut(s) 75, 622, 907
HindIII AAGCTT 1 cut(s) 1328
HinfI GANTC 8 cut(s) 7, 85, 95, 197, 571, 1082, 1235, 1391
HpaII CCGG 4 cut(s) 224, 399, 403, 1402
HphI GGTGA 2 cut(s) 791, 929
Hpy166II GTNNAC 3 cut(s) 25, 1435, 1483
Hpy188I TCNGA 8 cut(s) 12, 143, 379, 688, 826, 879, 1161, 1183
Hpy188III TCNNGA 6 cut(s) 22, 331, 738, 896, 1055, 1337
Hpy8I GTNNAC 3 cut(s) 25, 1435, 1483
Hpy99I CGWCG 6 cut(s) 119, 122, 237, 299, 1074, 1605
HpyAV CCTTC 4 cut(s) 521, 693, 761, 1141
HpyCH4III ACNGT 4 cut(s) 1070, 1312, 1487, 1560
Hsp92II CATG 6 cut(s) 45, 499, 1139, 1279, 1441, 1597
HspAI GCGC 3 cut(s) 75, 622, 907
Ksp22I TGATCA 1 cut(s) 874
LmnI GCTCC 6 cut(s) 226, 283, 581, 628, 1057, 1150
Lsp1109I GCAGC 8 cut(s) 270, 343, 601, 943, 1238, 1291, 1521, 1609
LweI GCATC 5 cut(s) 450, 673, 1107, 1117, 1648
MaeI CTAG 4 cut(s) 618, 785, 1283, 1625
MaeIII GTNAC 1 cut(s) 1301
MboII GAAGA 8 cut(s) 80, 315, 349, 529, 543, 976, 1077, 1268
MflI RGATCY 2 cut(s) 683, 1582
MhlI GDGCHC 3 cut(s) 223, 1448, 1645
MluCI AATT 8 cut(s) 183, 741, 947, 974, 1014, 1047, 1184, 1316
MlyI GAGTC 3 cut(s) 79, 89, 206
MmeI TCCRAC 3 cut(s) 1385, 1390, 1554
Mph1103I ATGCAT 1 cut(s) 1100
MroXI GAANNNNTTC 2 cut(s) 341, 1002
MseI TTAA 5 cut(s) 1046, 1187, 1205, 1424, 1454
MslI CAYNNNNRTG 2 cut(s) 897, 1093
MspA1I CMGCKG 2 cut(s) 283, 956
MspI CCGG 4 cut(s) 224, 399, 403, 1402
MspR9I CCNGG 2 cut(s) 128, 747
Mva1269I GAATGC 1 cut(s) 1228
MvaI CCWGG 2 cut(s) 128, 747
MvnI CGCG 1 cut(s) 275
NlaIII CATG 6 cut(s) 45, 499, 1139, 1279, 1441, 1597
NlaIV GGNNCC 2 cut(s) 279, 1584
NmeAIII GCCGAG 3 cut(s) 33, 220, 340
NsiI ATGCAT 1 cut(s) 1100
NspI RCATGY 1 cut(s) 45
NspV TTCGAA 1 cut(s) 1006
PaeI GCATGC 1 cut(s) 45
PceI AGGCCT 1 cut(s) 750
PctI GAATGC 1 cut(s) 1228
PdmI GAANNNNTTC 2 cut(s) 341, 1002
PfeI GAWTC 5 cut(s) 7, 571, 1082, 1235, 1391
PleI GAGTC 3 cut(s) 79, 89, 205
PpsI GAGTC 3 cut(s) 79, 89, 205
PpuMI RGGWCCY 1 cut(s) 1106
Psp124BI GAGCTC 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 1106
Psp6I CCWGG 2 cut(s) 126, 745
PspEI GGTNACC 1 cut(s) 1301
PspFI CCCAGC 1 cut(s) 1537
PspGI CCWGG 2 cut(s) 126, 745
PspN4I GGNNCC 2 cut(s) 279, 1584
PspPI GGNCC 3 cut(s) 405, 1106, 1671
PspPPI RGGWCCY 1 cut(s) 1106
PstI CTGCAG 1 cut(s) 1114
PsuI RGATCY 2 cut(s) 683, 1582
PvuII CAGCTG 1 cut(s) 956
RsaI GTAC 5 cut(s) 659, 868, 1494, 1606, 1634
RsaNI GTAC 5 cut(s) 658, 867, 1493, 1605, 1633
RseI CAYNNNNRTG 2 cut(s) 897, 1093
SacI GAGCTC 1 cut(s) 223
SaqAI TTAA 5 cut(s) 1046, 1187, 1205, 1424, 1454
Sau96I GGNCC 3 cut(s) 405, 1106, 1671
SchI GAGTC 3 cut(s) 79, 89, 206
ScrFI CCNGG 2 cut(s) 128, 747
SduI GDGCHC 3 cut(s) 223, 1448, 1645
SfaNI GCATC 5 cut(s) 450, 673, 1107, 1117, 1648
SfcI CTRYAG 1 cut(s) 1110
SfuI TTCGAA 1 cut(s) 1006
SinI GGWCC 3 cut(s) 405, 1106, 1671
SmiMI CAYNNNNRTG 2 cut(s) 897, 1093
SmlI CTYRAG 1 cut(s) 1447
SmoI CTYRAG 1 cut(s) 1447
SphI GCATGC 1 cut(s) 45
Sse9I AATT 8 cut(s) 183, 741, 947, 974, 1014, 1047, 1184, 1316
SseBI AGGCCT 1 cut(s) 750
SsiI CCGC 8 cut(s) 105, 123, 153, 275, 281, 1118, 1324, 1405
SspI AATATT 1 cut(s) 638
SspMI CTAG 4 cut(s) 618, 785, 1283, 1625
SstI GAGCTC 1 cut(s) 223
StuI AGGCCT 1 cut(s) 750
StyD4I CCNGG 2 cut(s) 126, 745
StyI CCWWGG 2 cut(s) 408, 554
TaaI ACNGT 4 cut(s) 1070, 1312, 1487, 1560
TaqI TCGA 5 cut(s) 135, 294, 419, 1006, 1518
TasI AATT 8 cut(s) 183, 741, 947, 974, 1014, 1047, 1184, 1316
TatI WGTACW 2 cut(s) 657, 1632
TauI GCSGC 3 cut(s) 126, 278, 1121
TfiI GAWTC 5 cut(s) 7, 571, 1082, 1235, 1391
Tru1I TTAA 5 cut(s) 1046, 1187, 1205, 1424, 1454
Tru9I TTAA 5 cut(s) 1046, 1187, 1205, 1424, 1454
TscAI CASTG 1 cut(s) 1315
TseI GCWGC 8 cut(s) 283, 356, 614, 956, 1226, 1279, 1509, 1597
TspDTI ATGAA 4 cut(s) 499, 1077, 1124, 1265
TspRI CASTG 1 cut(s) 1315
VpaK11BI GGWCC 3 cut(s) 405, 1106, 1671
XagI CCTNNNNNAGG 1 cut(s) 1059
XapI RAATTY 2 cut(s) 741, 1316
XceI RCATGY 1 cut(s) 45
XcmI CCANNNNNNNNNTGG 1 cut(s) 1207
XmiI GTMKAC 1 cut(s) 1482
XmnI GAANNNNTTC 2 cut(s) 341, 1002
XspI CTAG 4 cut(s) 618, 785, 1283, 1625
Zsp2I ATGCAT 1 cut(s) 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.