Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006993

Physical Location & Seq

Genomic Coordinates Reverse (-)

19119057 .. 19174338

Gene Structure 55282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG207000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCACCTCCCGAGGAAGAGGTTCACTGATTTTGCTGCTATTAGACAGGAGATATCTGATGAGACTAATAGAGAGACCGGCCGGACCAAGGCGATTTCAAGTGTGCCTATCCATCTTAGCATCTACTCCCCTAATGTTGTGAACTTGACACTAATAGATCTTCCTGGACTTACAAAGGTAGTTGTAGAGGGACAGGCAGAGAGCATAGTGCAGGACATTGAGAACATGGTTAGGGGCTTCATTGAGAAGCCCAACTGTATCATTCTGGCTATTTCCCCTGCCAACCAAGATCTTGCTACGTCTGATGCAATTAAGATCTCTCATGAAGTAGATCCCAAAGGTGAGAGGACATTTGGAGTTCTCACAAAGATTGATCTTATGGACCAAGGTACAAATGCAGTCGATATTTTGGAAGGAAGATCATATAGACTTCTGTTCCCTTGGATTGGTGTTGTGAATCGCTCCCAAGCTGATATAAACAAGAGTGTTAATATGATTGCTGCTAGGCACAGGGAGCGTGAATATTTTGCTAATAGCCCCGAGTACAAGCATCTCGCGAGCAAGATGGGATCTGAGCATTTAGGAAGGGATGCTCGTAGAAGATATAATGAACTGTGGAAACGAAAGCATGAGACTGGCCAATGGCTTGAAATTGAAGCAGCTAAAGCAATGTCTAACCGAGCAGGCTTCTCTGCCATGAATGCATCGGGCATAGTGCTTTTAAATATGACCACCAAGCCAAATGTGTTGGCAGAGAATAATGGAAAAGCTACTTATGCAGGTTCTACAAGGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

265

Amino Acids

29.6

Weight (kDa)

9.12

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	5 - 124	4.4e-31	Dynamin family
Dynamin_M	PF01031	132 - 195	1.1e-18	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61760 AT3G61760 AT3G61760
fragaria_vesca	FvH4_7g16440
malus_domestica	MD01G1080800.v1.1 MD07G1149800.v1.1
prunus_persica	Prupe.2G188500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359481 RchiOBHm_Chr4g0423491 RchiOBHm_Chr5g0037431 RchiOBHm_Chr6g0269891
rosa_laevigata	RLG00000012393 RLG00000023120 RLG00000027866
rosa_multiflora	Rmu_sc0002556.1_g000007 Rmu_sc0006895.1_g000006
rosa_roxburghii	Rroxscaffold_4G00296970
rosa_rugosa	Rorug01G0271500
rosa_samantha	Rh1AG285000 Rh1BG251100 Rh1CG268900 Rh1DG280200 Rh2BG207000 Rh4DG017500
rosa_wichuraiana	Rw1G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	770
AccII	CGCG	1 cut(s)	557
AclWI	GGATC	2 cut(s)	326, 577
AcoI	YGGCCR	2 cut(s)	79, 637
AfaI	GTAC	2 cut(s)	391, 545
AfiI	CCNNNNNNNGG	2 cut(s)	88, 446
AgsI	TTSAA	3 cut(s)	99, 650, 656
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	3 cut(s)	470, 662, 770
AluI	AGCT	3 cut(s)	470, 662, 770
Alw26I	GTCTC	3 cut(s)	56, 68, 626
AlwI	GGATC	2 cut(s)	326, 577
Ama87I	CYCGRG	2 cut(s)	10, 539
AoxI	GGCC	2 cut(s)	79, 637
ApeKI	GCWGC	3 cut(s)	35, 500, 659
Asp700I	GAANNNNTTC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	84, 382
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	2 cut(s)	10, 539
AvaII	GGWCC	2 cut(s)	84, 382
BalI	TGGCCA	1 cut(s)	639
BbvI	GCAGC	3 cut(s)	22, 487, 671
BccI	CCATC	2 cut(s)	120, 559
BciT130I	CCWGG	1 cut(s)	165
BcoDI	GTCTC	3 cut(s)	56, 68, 626
BfaI	CTAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	770
BglII	AGATCT	3 cut(s)	157, 289, 315
BisI	GCNGC	3 cut(s)	36, 501, 660
BlsI	GCNGC	3 cut(s)	37, 502, 661
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	2 cut(s)	84, 382
BmeT110I	CYCGRG	2 cut(s)	10, 539
BmgT120I	GGNCC	2 cut(s)	84, 382
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	5 cut(s)	129, 295, 559, 580, 713
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	4 cut(s)	11, 87, 385, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 446
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	640
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	4 cut(s)	11, 87, 385, 440
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	2 cut(s)	88, 446
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	1 cut(s)	640
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	3 cut(s)	22, 487, 671
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	557
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	81, 639
BsiEI	CGRYCG	1 cut(s)	82
BsiHKCI	CYCGRG	2 cut(s)	10, 539
BsiSI	CCGG	2 cut(s)	78, 82
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	88, 446
BsmAI	GTCTC	3 cut(s)	56, 68, 626
BsmFI	GGGAC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	2 cut(s)	81, 639
Bso31I	GGTCTC	1 cut(s)	68
BsoBI	CYCGRG	2 cut(s)	10, 539
Bsp143I	GATC	7 cut(s)	157, 289, 315, 331, 373, 419, 569
Bsp68I	TCGCGA	1 cut(s)	557
BspANI	GGCC	2 cut(s)	81, 639
BspCNI	CTCAG	1 cut(s)	565
BspFNI	CGCG	1 cut(s)	557
BspHI	TCATGA	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	770
BspPI	GGATC	2 cut(s)	326, 577
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	675
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	4 cut(s)	11, 87, 385, 440
BssMI	GATC	7 cut(s)	157, 289, 315, 331, 373, 419, 569
BssT1I	CCWWGG	3 cut(s)	87, 385, 440
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	257, 615
Bst6I	CTCTTC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	559, 685
BstDEI	CTNAG	2 cut(s)	116, 573
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	1 cut(s)	557
BstKTI	GATC	7 cut(s)	160, 292, 318, 334, 376, 422, 572
BstMAI	GTCTC	3 cut(s)	56, 68, 626
BstMBI	GATC	7 cut(s)	157, 289, 315, 331, 373, 419, 569
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	4 cut(s)	514, 665, 701, 776
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	3 cut(s)	22, 487, 671
BstX2I	RGATCY	5 cut(s)	157, 289, 315, 331, 569
BstYI	RGATCY	5 cut(s)	157, 289, 315, 331, 569
BstZI	CGGCCG	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	81, 639
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	1 cut(s)	24
BtuMI	TCGCGA	1 cut(s)	557
BveI	ACCTGC	1 cut(s)	770
Cac8I	GCNNGC	2 cut(s)	559, 685
CciI	TCATGA	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	84, 382
Csp6I	GTAC	2 cut(s)	390, 544
CviAII	CATG	4 cut(s)	226, 323, 629, 697
CviQI	GTAC	2 cut(s)	390, 544
DdeI	CTNAG	2 cut(s)	116, 573
DpnI	GATC	7 cut(s)	159, 291, 317, 333, 375, 421, 571
DpnII	GATC	7 cut(s)	157, 289, 315, 331, 373, 419, 569
DraI	TTTAAA	1 cut(s)	723
EaeI	YGGCCR	2 cut(s)	79, 637
EagI	CGGCCG	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	3 cut(s)	87, 385, 440
Eco31I	GGTCTC	1 cut(s)	68
Eco32I	GATATC	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	84, 382
Eco52I	CGGCCG	1 cut(s)	79
Eco88I	CYCGRG	2 cut(s)	10, 539
EcoRII	CCWGG	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	54
EcoT14I	CCWWGG	3 cut(s)	87, 385, 440
EcoT22I	ATGCAT	1 cut(s)	706
ErhI	CCWWGG	3 cut(s)	87, 385, 440
FaeI	CATG	4 cut(s)	229, 326, 632, 700
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	4 cut(s)	225, 322, 628, 696
Fnu4HI	GCNGC	3 cut(s)	36, 501, 660
FokI	GGATG	1 cut(s)	602
Fsp4HI	GCNGC	3 cut(s)	36, 501, 660
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	3 cut(s)	36, 501, 660
HaeIII	GGCC	2 cut(s)	81, 639
HapII	CCGG	2 cut(s)	78, 82
Hin1II	CATG	4 cut(s)	229, 326, 632, 700
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	78, 82
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	2 cut(s)	24, 142
Hpy188I	TCNGA	3 cut(s)	58, 304, 574
Hpy188III	TCNNGA	3 cut(s)	10, 323, 556
Hpy8I	GTNNAC	2 cut(s)	24, 142
HpyAV	CCTTC	2 cut(s)	407, 579
HpyCH4III	ACNGT	2 cut(s)	257, 615
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	6 cut(s)	4, 211, 308, 398, 704, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	514, 665, 701, 776
HpyF3I	CTNAG	2 cut(s)	116, 573
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	4 cut(s)	229, 326, 632, 700
Kzo9I	GATC	7 cut(s)	157, 289, 315, 331, 373, 419, 569
LmnI	GCTCC	2 cut(s)	467, 514
Lsp1109I	GCAGC	3 cut(s)	22, 487, 671
LweI	GCATC	5 cut(s)	129, 295, 559, 580, 713
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	299
MalI	GATC	7 cut(s)	159, 291, 317, 333, 375, 421, 571
MboI	GATC	7 cut(s)	157, 289, 315, 331, 373, 419, 569
MboII	GAAGA	4 cut(s)	28, 152, 429, 612
MflI	RGATCY	5 cut(s)	157, 289, 315, 331, 569
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	2 cut(s)	309, 651
MluNI	TGGCCA	1 cut(s)	639
MnlI	CCTC	5 cut(s)	6, 12, 17, 181, 339
Mox20I	TGGCCA	1 cut(s)	639
Mph1103I	ATGCAT	1 cut(s)	706
MroXI	GAANNNNTTC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	3 cut(s)	312, 489, 722
Msp20I	TGGCCA	1 cut(s)	639
MspI	CCGG	2 cut(s)	78, 82
MspR9I	CCNGG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	706
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	4 cut(s)	514, 665, 701, 776
NdeII	GATC	7 cut(s)	157, 289, 315, 331, 373, 419, 569
NlaIII	CATG	4 cut(s)	229, 326, 632, 700
NruI	TCGCGA	1 cut(s)	557
NsiI	ATGCAT	1 cut(s)	706
PagI	TCATGA	1 cut(s)	322
PctI	GAATGC	1 cut(s)	706
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	457
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	37, 502, 661
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	84, 382
PsuI	RGATCY	5 cut(s)	157, 289, 315, 331, 569
RruI	TCGCGA	1 cut(s)	557
RsaI	GTAC	2 cut(s)	391, 545
RsaNI	GTAC	2 cut(s)	390, 544
SaqAI	TTAA	3 cut(s)	312, 489, 722
SatI	GCNGC	3 cut(s)	36, 501, 660
Sau3AI	GATC	7 cut(s)	157, 289, 315, 331, 373, 419, 569
Sau96I	GGNCC	2 cut(s)	84, 382
ScrFI	CCNGG	1 cut(s)	165
SfaNI	GCATC	5 cut(s)	129, 295, 559, 580, 713
SinI	GGWCC	2 cut(s)	84, 382
Sse9I	AATT	2 cut(s)	309, 651
SspI	AATATT	1 cut(s)	524
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	3 cut(s)	87, 385, 440
TaaI	ACNGT	2 cut(s)	257, 615
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	309, 651
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	3 cut(s)	312, 489, 722
Tru9I	TTAA	3 cut(s)	312, 489, 722
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	3 cut(s)	35, 500, 659
TspDTI	ATGAA	4 cut(s)	229, 339, 624, 713
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	84, 382
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	1 cut(s)	504
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.