RchiOBHm_Chr6g0269891
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006993
Physical Location & Seq
Forward (+)
27459867 .. 27462584
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24210

Sequence Viewer

Length: 723 bp
ATGTATGTGTGTATGTCTTTTTACGCCGAGTTTATGCACCTCCCGAGGAAGAGGTTCACTGATTTTGCTGCTGTTAGACAGGAGATATCTGATGAGACTGATAGAGAGACCAGCCGGACCAAGGCGATTTCGAGTGTGCCTATCCATCTTAGCATCTACTCCCCTAATGTTGTGAACTTGACACCAATAGATCTTCCTGGACTCACAAAGGTAGTTGTAGAGGGTCAGGCAGAGAGCATAGTGCAGGACATTGAGAACATGGTTAGGGGCTTCATTGAGAAGCCCAACTGTATCATTCTGGCTATTTCCCCTGCCAACCAAGATCTTGCTACATCTGATGCAATTAAGATCTCTCGTGAAGTAGATCCCAAAGGTGAGAGGACATTTGGATTTCTCACAAAGATTGATCTTATGGACCAAGGTACAAATGCAGTCGATTTTTCAATTCTCCGTTTGATTTCACTGTTGCTTGACTTGTTAGATAGGTCAAAGTTGTTGGTAGCTTTACACCCTTCACCCTTGATTTTGGAAGGAATATCATATAGACTTCAATTCCCTTGGATTGGTGTTGTGAATCACTCCCAAGCTGATATAAACAAGAGTGTTGATATGATTGCTGCTAGGCACAGGGAGCGTGAATATTTTGCTAATAGCCCCGAGTACAACCATCTTGCGAGCAAGATGGGATCTGAGCATTTAGGGAGGTATATGCATTATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

240

Amino Acids

27.21

Weight (kDa)

6.07

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 16 - 135 4e-28 Dynamin family
Dynamin_M PF01031 175 - 235 2.6e-15 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 359, 694
AfaI GTAC 2 cut(s) 424, 662
AfiI CCNNNNNNNGG 2 cut(s) 121, 563
AgsI TTSAA 2 cut(s) 444, 551
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 2 cut(s) 503, 587
AluI AGCT 2 cut(s) 503, 587
Alw26I GTCTC 2 cut(s) 89, 101
AlwI GGATC 2 cut(s) 359, 694
Ama87I CYCGRG 2 cut(s) 43, 656
ApeKI GCWGC 2 cut(s) 68, 617
Asp700I GAANNNNTTC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 117, 415
AsuHPI GGTGA 2 cut(s) 386, 507
AvaI CYCGRG 2 cut(s) 43, 656
AvaII GGWCC 2 cut(s) 117, 415
BauI CACGAG 1 cut(s) 354
BbvI GCAGC 2 cut(s) 55, 604
BccI CCATC 3 cut(s) 153, 675, 676
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 89, 101
BfaI CTAG 1 cut(s) 621
BglII AGATCT 3 cut(s) 190, 322, 348
BisI GCNGC 2 cut(s) 69, 618
BlsI GCNGC 2 cut(s) 70, 619
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 2 cut(s) 117, 415
BmeT110I CYCGRG 2 cut(s) 43, 656
BmgT120I GGNCC 2 cut(s) 117, 415
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 162, 328
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 4 cut(s) 44, 120, 418, 557
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 563
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 4 cut(s) 44, 120, 418, 557
BseLI CCNNNNNNNGG 2 cut(s) 121, 563
BseMII CTCAG 1 cut(s) 681
BseXI GCAGC 2 cut(s) 55, 604
BsgI GTGCAG 1 cut(s) 263
BsiHKCI CYCGRG 2 cut(s) 43, 656
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 121, 563
BsmAI GTCTC 2 cut(s) 89, 101
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 2 cut(s) 43, 656
Bsp143I GATC 6 cut(s) 190, 322, 348, 364, 406, 686
BspCNI CTCAG 1 cut(s) 682
BspPI GGATC 2 cut(s) 359, 694
BspTNI GGTCTC 1 cut(s) 101
BssECI CCNNGG 4 cut(s) 44, 120, 418, 557
BssMI GATC 6 cut(s) 190, 322, 348, 364, 406, 686
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 3 cut(s) 120, 418, 557
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 290, 465
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 676
BstDEI CTNAG 2 cut(s) 149, 690
BstKTI GATC 6 cut(s) 193, 325, 351, 367, 409, 689
BstMAI GTCTC 2 cut(s) 89, 101
BstMBI GATC 6 cut(s) 190, 322, 348, 364, 406, 686
BstMWI GCNNNNNNNGC 1 cut(s) 631
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 55, 604
BstX2I RGATCY 5 cut(s) 190, 322, 348, 364, 686
BstYI RGATCY 5 cut(s) 190, 322, 348, 364, 686
BtsIMutI CAGTG 2 cut(s) 57, 461
Cac8I GCNNGC 1 cut(s) 676
Cfr13I GGNCC 2 cut(s) 117, 415
Csp6I GTAC 2 cut(s) 423, 661
CviAII CATG 1 cut(s) 259
CviJI RGCY 7 cut(s) 114, 270, 283, 302, 503, 587, 654
CviKI_1 RGCY 7 cut(s) 114, 270, 283, 302, 503, 587, 654
CviQI GTAC 2 cut(s) 423, 661
DdeI CTNAG 2 cut(s) 149, 690
DpnI GATC 6 cut(s) 192, 324, 350, 366, 408, 688
DpnII GATC 6 cut(s) 190, 322, 348, 364, 406, 686
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 3 cut(s) 120, 418, 557
Eco31I GGTCTC 1 cut(s) 101
Eco32I GATATC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 117, 415
Eco88I CYCGRG 2 cut(s) 43, 656
EcoRII CCWGG 1 cut(s) 196
EcoRV GATATC 1 cut(s) 87
EcoT14I CCWWGG 3 cut(s) 120, 418, 557
EcoT22I ATGCAT 1 cut(s) 714
ErhI CCWWGG 3 cut(s) 120, 418, 557
FaeI CATG 1 cut(s) 262
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 69, 618
Fsp4HI GCNGC 2 cut(s) 69, 618
FspBI CTAG 1 cut(s) 621
GluI GCNGC 2 cut(s) 69, 618
HapII CCGG 1 cut(s) 115
Hin1II CATG 1 cut(s) 262
HinfI GANTC 2 cut(s) 201, 574
HpaII CCGG 1 cut(s) 115
HphI GGTGA 2 cut(s) 386, 507
Hpy166II GTNNAC 2 cut(s) 57, 175
Hpy188I TCNGA 3 cut(s) 91, 337, 691
Hpy188III TCNNGA 2 cut(s) 43, 356
Hpy8I GTNNAC 2 cut(s) 57, 175
HpyAV CCTTC 2 cut(s) 522, 524
HpyCH4III ACNGT 2 cut(s) 290, 465
HpyCH4V TGCA 5 cut(s) 37, 244, 341, 431, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 631
HpyF3I CTNAG 2 cut(s) 149, 690
Hsp92II CATG 1 cut(s) 262
Kzo9I GATC 6 cut(s) 190, 322, 348, 364, 406, 686
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 2 cut(s) 55, 604
LweI GCATC 2 cut(s) 162, 328
MaeI CTAG 1 cut(s) 621
MalI GATC 6 cut(s) 192, 324, 350, 366, 408, 688
MboI GATC 6 cut(s) 190, 322, 348, 364, 406, 686
MboII GAAGA 2 cut(s) 61, 185
MflI RGATCY 5 cut(s) 190, 322, 348, 364, 686
MluCI AATT 3 cut(s) 342, 444, 551
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 6 cut(s) 39, 45, 50, 214, 372, 696
Mph1103I ATGCAT 1 cut(s) 714
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 1 cut(s) 345
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 631
NdeII GATC 6 cut(s) 190, 322, 348, 364, 406, 686
NlaIII CATG 1 cut(s) 262
NmeAIII GCCGAG 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 714
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 574
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 2 cut(s) 70, 619
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspPI GGNCC 2 cut(s) 117, 415
PsuI RGATCY 5 cut(s) 190, 322, 348, 364, 686
RsaI GTAC 2 cut(s) 424, 662
RsaNI GTAC 2 cut(s) 423, 661
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 2 cut(s) 69, 618
Sau3AI GATC 6 cut(s) 190, 322, 348, 364, 406, 686
Sau96I GGNCC 2 cut(s) 117, 415
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 198
SetI ASST 9 cut(s) 42, 56, 213, 376, 424, 488, 505, 589, 707
SfaNI GCATC 2 cut(s) 162, 328
SinI GGWCC 2 cut(s) 117, 415
Sse9I AATT 3 cut(s) 342, 444, 551
SspI AATATT 1 cut(s) 641
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 3 cut(s) 120, 418, 557
TaaI ACNGT 2 cut(s) 290, 465
TaqI TCGA 2 cut(s) 131, 435
TasI AATT 3 cut(s) 342, 444, 551
TatI WGTACW 1 cut(s) 660
TfiI GAWTC 1 cut(s) 574
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 2 cut(s) 64, 468
TseI GCWGC 2 cut(s) 68, 617
TspDTI ATGAA 1 cut(s) 262
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 2 cut(s) 64, 468
VpaK11BI GGWCC 2 cut(s) 117, 415
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 1 cut(s) 621
Zsp2I ATGCAT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.