RLG00000012393
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006993
Physical Location & Seq
Forward (+)
18275918 .. 18276792
875 bp
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UTR
Exon/CDS
Intron
RLM00000012393

Sequence Viewer

Length: 306 bp
ATGCAACTCCCGAGGAAGAGGTTCACTGATTTTGCTACTGTTAGACAAGAGATATCTGACGAGACTGATAGAGAGACCGGCCGGACCAAGGCGATTTTGAGTGTGCCTATCCATCTTATCATCTACTCCCCTAATGTTGTGAACTTGACACTAATAGATCTTCCTAGACTCACAAAGGTAGCTGTAGAGGGTCAGGCACAGAGCATAGTGCAGGACATTGAGAACATGGTTAGGGACTTCATTGAGAAGGTAATTAAGCAAACGGTTGAGAATATCTACAAGAAACTAGGTTATGAGATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

102

Amino Acids

11.63

Weight (kDa)

6.58

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 5 - 83 4.3e-12 Dynamin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 88
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 56, 68
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 84
AvaI CYCGRG 1 cut(s) 10
AvaII GGWCC 1 cut(s) 84
BccI CCATC 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 56, 68
BfaI CTAG 2 cut(s) 165, 287
BfmI CTRYAG 1 cut(s) 183
BglII AGATCT 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 11, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 11, 87
BseLI CCNNNNNNNGG 1 cut(s) 88
BseX3I CGGCCG 1 cut(s) 79
BsgI GTGCAG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 2 cut(s) 78, 82
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 56, 68
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 10
Bsp143I GATC 1 cut(s) 157
BspANI GGCC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 11, 87
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 40, 265
Bst6I CTCTTC 1 cut(s) 11
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 56, 68
BstMBI GATC 1 cut(s) 157
BstMCI CGRYCG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 84
CviAII CATG 1 cut(s) 226
CviJI RGCY 2 cut(s) 81, 182
CviKI_1 RGCY 2 cut(s) 81, 182
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 79
EagI CGGCCG 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EclXI CGGCCG 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 68
Eco32I GATATC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 84
Eco52I CGGCCG 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 10
EcoRV GATATC 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 1 cut(s) 229
FaiI YATR 4 cut(s) 206, 227, 294, 304
FaqI GGGAC 1 cut(s) 248
FatI CATG 1 cut(s) 225
FspBI CTAG 2 cut(s) 165, 287
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 78, 82
Hin1II CATG 1 cut(s) 229
HinfI GANTC 1 cut(s) 168
HpaII CCGG 2 cut(s) 78, 82
Hpy166II GTNNAC 2 cut(s) 24, 142
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 2 cut(s) 24, 142
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 2 cut(s) 40, 265
HpyCH4V TGCA 2 cut(s) 4, 211
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 91, 95, 179, 197
MaeI CTAG 2 cut(s) 165, 287
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 28, 152
MflI RGATCY 1 cut(s) 157
MluCI AATT 1 cut(s) 252
MlyI GAGTC 1 cut(s) 162
MnlI CCTC 3 cut(s) 6, 12, 181
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 1 cut(s) 255
MspI CCGG 2 cut(s) 78, 82
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 20
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 157
SaqAI TTAA 1 cut(s) 255
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 162
SetI ASST 5 cut(s) 23, 180, 184, 252, 292
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 84
Sse9I AATT 1 cut(s) 252
SspMI CTAG 2 cut(s) 165, 287
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 40, 265
TasI AATT 1 cut(s) 252
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 229, 291
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 2 cut(s) 165, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.