Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Reverse (-)

26339248 .. 26341872

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31176

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGCTTTCTCTGTGTATCAGAACTCTATTTCTCAATACAAGTTTGTTTTCTCTATGTTTTTCTCTGCTTTTCATACAAAACTATCATGGCATCAAGAGCCAGGTTTTGATCGGGACCGGAATTCATCATCGATCTTCATCGGAATTCTTCACTGGAAGCTTCTTAAAGAATGGAATGCCTGCTAGTAATCCAGGTTTAAATCAAGGAATGCAATGGAATGGTGCTGATATTGGTAGTATGGTGTCCCCTGCTGTTTTTGTTGCTCAAAATGGAGGGGGAAGTCATATGTTCTACAATGGAGGGATGCAACAACATAATTTGAGCACTGGAACAAGTTATTCACATCAAAATGGTTACTATCCCCAACATCAGCAACTTGCTTCAAACTACAAAGGAAATGTTTCACAGTATAATGGTAATGGCTTCTTCCTACAGCAACCTGTTGTTCAACAGCAACAAAAACAAAATGGTGGAAACAAGTACTACAGTTCACAAGGAGGTGTATCTCAATTACCTGACATTTCAAATCAAGGCTTTGGTGGCTCCATTGTGCGTCAAGTTTGCGACAAACTTGGACACGATCACTCGGCATATAAGTGGCATTACAGGAATTTTCAGTCGCAGAACATTGCATCAAGTTCATACATTGAGTCTCCTCAATATCCTGCTCAGAATTTAATGGAGGGCAATGAAATGACACAGCCAAATAATGTTGGAAGCTTTTCTCGTAGCCCTATGTCACATCATAATCTGGTACAGTCGCAAAATTCAGGAACTTTCAGGGGCAACTTCAACTCAAATGCCGCTGTCAATAAATTTGATCAAGTCATGGGGGATTACAAGATAAGGGATGATCGAAAGGCACAAGCTAGTGTCCCTGTTGTTGATATCAGAGTTTCTACTCCCAGAGCTTGTTCTTCACCTGCAACCAGTAATCCAAGCGAAGCAACCACTGTTCAAACTTCTTCTGTTCCCAGATCTTCTTCTACTCCTGAACTACAGCTTCTTGATGAATTTGATCCGTGTGATTCTGTTTCGGGTGGTCCATTTGGTTCTGTTTTAGCTGCGCCACCTAATTCAAACAATGCTGCAATGGACTTACTTGGTTCCCTGTTATTGGCCATTGTGCCAAGTACATCTACTACTACCACATTTGAAGTTGATGGCCTTGTAAATTCTGCTCCAGTGACTACAGGTATGGCAACTTCTCCAGATTCTACTATGTTAAACTGTAGGCATGCCTCTTGTCCTCTGAAGCTATGCCAATCATTGCCACTCATTCCTCTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0008289 GO:0012505 GO:0016020 GO:0030276 GO:0031090 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

430

Amino Acids

46.31

Weight (kDa)

7.19

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	931
Acc36I	ACCTGC	1 cut(s)	931
AciI	CCGC	1 cut(s)	804
AclWI	GGATC	1 cut(s)	1013
AcoI	YGGCCR	1 cut(s)	1119
AcsI	RAATTY	8 cut(s)	120, 143, 610, 673, 766, 815, 1013, 1174
AcuI	CTGAAG	1 cut(s)	1274
AfaI	GTAC	3 cut(s)	482, 756, 1135
AfiI	CCNNNNNNNGG	1 cut(s)	1117
AgsI	TTSAA	7 cut(s)	384, 449, 525, 793, 959, 1080, 1157
AjnI	CCWGG	2 cut(s)	99, 190
AluBI	AGCT	7 cut(s)	159, 720, 869, 911, 1003, 1064, 1258
AluI	AGCT	7 cut(s)	159, 720, 869, 911, 1003, 1064, 1258
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	1 cut(s)	657
AlwI	GGATC	1 cut(s)	1013
AoxI	GGCC	2 cut(s)	1119, 1165
ApeKI	GCWGC	2 cut(s)	1064, 1088
ApoI	RAATTY	8 cut(s)	120, 143, 610, 673, 766, 815, 1013, 1174
Asp700I	GAANNNNTTC	2 cut(s)	400, 721
AspLEI	GCGC	1 cut(s)	1069
AspS9I	GGNCC	2 cut(s)	114, 1043
AsuHPI	GGTGA	1 cut(s)	912
AvaII	GGWCC	2 cut(s)	114, 1043
BalI	TGGCCA	1 cut(s)	1121
BarI	GAAGNNNNNNTAC	2 cut(s)	1189, 1221
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	1051, 1075
BccI	CCATC	1 cut(s)	1157
BciT130I	CCWGG	2 cut(s)	101, 192
BclI	TGATCA	1 cut(s)	820
BcoDI	GTCTC	1 cut(s)	657
BfaI	CTAG	2 cut(s)	183, 870
BfmI	CTRYAG	5 cut(s)	431, 484, 998, 1191, 1231
BfuAI	ACCTGC	1 cut(s)	931
BglII	AGATCT	1 cut(s)	977
BisI	GCNGC	3 cut(s)	804, 1065, 1089
BlsI	GCNGC	3 cut(s)	805, 1066, 1090
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	2 cut(s)	101, 192
Bme18I	GGWCC	2 cut(s)	114, 1043
BmgT120I	GGNCC	2 cut(s)	114, 1043
BmiI	GGNNCC	3 cut(s)	115, 544, 1108
BmrFI	CCNGG	2 cut(s)	101, 192
BmsI	GCATC	3 cut(s)	99, 294, 641
BpmI	CTGGAG	2 cut(s)	1167, 1194
Bsa29I	ATCGAT	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	1117
Bse1I	ACTGG	4 cut(s)	157, 331, 930, 1184
Bse3DI	GCAATG	5 cut(s)	218, 627, 694, 1098, 1268
Bse8I	GATNNNNATC	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	101, 192
BseCI	ATCGAT	1 cut(s)	130
BseGI	GGATG	2 cut(s)	309, 856
BseJI	GATNNNNATC	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	1117
BseMI	GCAATG	5 cut(s)	218, 627, 694, 1098, 1268
BseMII	CTCAG	1 cut(s)	683
BseNI	ACTGG	4 cut(s)	157, 331, 930, 1184
BseRI	GAGGAG	1 cut(s)	645
BseXI	GCAGC	2 cut(s)	1051, 1075
BshFI	GGCC	2 cut(s)	1121, 1167
BshVI	ATCGAT	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	3 cut(s)	127, 229, 860
BslI	CCNNNNNNNGG	1 cut(s)	1117
BsmAI	GTCTC	1 cut(s)	657
BsmFI	GGGAC	3 cut(s)	127, 229, 860
BsmI	GAATGC	2 cut(s)	180, 213
BsnI	GGCC	2 cut(s)	1121, 1167
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	7 cut(s)	108, 131, 580, 820, 853, 977, 1018
BspACI	CCGC	1 cut(s)	804
BspANI	GGCC	2 cut(s)	1121, 1167
BspCNI	CTCAG	1 cut(s)	682
BspDI	ATCGAT	1 cut(s)	130
BspLI	GGNNCC	3 cut(s)	115, 544, 1108
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	1 cut(s)	1013
BsrDI	GCAATG	5 cut(s)	218, 627, 694, 1098, 1268
BsrI	ACTGG	4 cut(s)	157, 331, 930, 1184
BssMI	GATC	7 cut(s)	108, 131, 580, 820, 853, 977, 1018
Bst2UI	CCWGG	2 cut(s)	101, 192
Bst4CI	ACNGT	5 cut(s)	408, 488, 759, 955, 1232
BstC8I	GCNNGC	2 cut(s)	180, 1239
BstDEI	CTNAG	1 cut(s)	669
BstF5I	GGATG	2 cut(s)	309, 856
BstHHI	GCGC	1 cut(s)	1069
BstKTI	GATC	7 cut(s)	111, 134, 583, 823, 856, 980, 1021
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	7 cut(s)	108, 131, 580, 820, 853, 977, 1018
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 540
BstNI	CCWGG	2 cut(s)	101, 192
BstNSI	RCATGY	1 cut(s)	1241
BstSCI	CCNGG	2 cut(s)	99, 190
BstSFI	CTRYAG	5 cut(s)	431, 484, 998, 1191, 1231
BstV1I	GCAGC	2 cut(s)	1051, 1075
BstX2I	RGATCY	1 cut(s)	977
BstYI	RGATCY	1 cut(s)	977
Bsu15I	ATCGAT	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	1121, 1167
BsuTUI	ATCGAT	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	309, 856
BtsIMutI	CAGTG	4 cut(s)	150, 324, 951, 1191
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	2 cut(s)	180, 1239
CfoI	GCGC	1 cut(s)	1069
Cfr13I	GGNCC	2 cut(s)	114, 1043
ClaI	ATCGAT	1 cut(s)	130
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	3 cut(s)	481, 755, 1134
CviAII	CATG	3 cut(s)	86, 829, 1238
CviQI	GTAC	3 cut(s)	481, 755, 1134
DdeI	CTNAG	1 cut(s)	669
DpnI	GATC	7 cut(s)	110, 133, 582, 822, 855, 979, 1020
DpnII	GATC	7 cut(s)	108, 131, 580, 820, 853, 977, 1018
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	1119
Eco32I	GATATC	1 cut(s)	889
Eco47I	GGWCC	2 cut(s)	114, 1043
Eco57I	CTGAAG	1 cut(s)	1274
EcoRI	GAATTC	2 cut(s)	120, 143
EcoRII	CCWGG	2 cut(s)	99, 190
EcoRV	GATATC	1 cut(s)	889
FaeI	CATG	3 cut(s)	89, 832, 1241
FaqI	GGGAC	3 cut(s)	127, 229, 860
FatI	CATG	3 cut(s)	85, 828, 1237
FauNDI	CATATG	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	3 cut(s)	804, 1065, 1089
FokI	GGATG	2 cut(s)	316, 863
Fsp4HI	GCNGC	3 cut(s)	804, 1065, 1089
FspBI	CTAG	2 cut(s)	183, 870
GlaI	GCGC	1 cut(s)	1068
GluI	GCNGC	3 cut(s)	804, 1065, 1089
GsuI	CTGGAG	2 cut(s)	1167, 1194
HaeIII	GGCC	2 cut(s)	1121, 1167
HapII	CCGG	1 cut(s)	117
HgaI	GACGC	1 cut(s)	542
HhaI	GCGC	1 cut(s)	1069
Hin1II	CATG	3 cut(s)	89, 832, 1241
Hin6I	GCGC	1 cut(s)	1067
HinP1I	GCGC	1 cut(s)	1067
HindIII	AAGCTT	2 cut(s)	157, 718
HinfI	GANTC	3 cut(s)	650, 1028, 1214
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	912
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	5 cut(s)	20, 142, 672, 893, 1254
Hpy188III	TCNNGA	6 cut(s)	94, 112, 771, 992, 1007, 1211
Hpy8I	GTNNAC	1 cut(s)	491
HpyCH4III	ACNGT	5 cut(s)	408, 488, 759, 955, 1232
HpyCH4V	TGCA	5 cut(s)	211, 307, 632, 926, 1091
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 540
HpyF3I	CTNAG	1 cut(s)	669
Hsp92II	CATG	3 cut(s)	89, 832, 1241
HspAI	GCGC	1 cut(s)	1067
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	7 cut(s)	108, 131, 580, 820, 853, 977, 1018
LmnI	GCTCC	2 cut(s)	548, 1186
Lsp1109I	GCAGC	2 cut(s)	1051, 1075
LweI	GCATC	3 cut(s)	99, 294, 641
MaeI	CTAG	2 cut(s)	183, 870
MaeIII	GTNAC	3 cut(s)	353, 738, 1186
MalI	GATC	7 cut(s)	110, 133, 582, 822, 855, 979, 1020
MboI	GATC	7 cut(s)	108, 131, 580, 820, 853, 977, 1018
MboII	GAAGA	7 cut(s)	126, 139, 418, 909, 957, 972, 975
MflI	RGATCY	1 cut(s)	977
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	1121
MluNI	TGGCCA	1 cut(s)	1121
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	694
MnlI	CCTC	8 cut(s)	266, 293, 491, 666, 676, 1252, 1260, 1293
Mox20I	TGGCCA	1 cut(s)	1121
MroXI	GAANNNNTTC	2 cut(s)	400, 721
MscI	TGGCCA	1 cut(s)	1121
MseI	TTAA	4 cut(s)	164, 197, 677, 1226
MslI	CAYNNNNRTG	2 cut(s)	348, 595
Msp20I	TGGCCA	1 cut(s)	1121
MspA1I	CMGCKG	1 cut(s)	806
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	101, 192
Mva1269I	GAATGC	2 cut(s)	180, 213
MvaI	CCWGG	2 cut(s)	101, 192
MwoI	GCNNNNNNNGC	2 cut(s)	96, 540
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	7 cut(s)	108, 131, 580, 820, 853, 977, 1018
NlaIII	CATG	3 cut(s)	89, 832, 1241
NlaIV	GGNNCC	3 cut(s)	115, 544, 1108
NmeAIII	GCCGAG	1 cut(s)	566
NmuCI	GTSAC	2 cut(s)	738, 1186
NspI	RCATGY	1 cut(s)	1241
PaeI	GCATGC	1 cut(s)	1241
PaqCI	CACCTGC	1 cut(s)	931
PctI	GAATGC	2 cut(s)	180, 213
PdmI	GAANNNNTTC	2 cut(s)	400, 721
PfeI	GAWTC	2 cut(s)	1028, 1214
PkrI	GCNGC	3 cut(s)	805, 1066, 1090
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
Psp6I	CCWGG	2 cut(s)	99, 190
PspGI	CCWGG	2 cut(s)	99, 190
PspN4I	GGNNCC	3 cut(s)	115, 544, 1108
PspPI	GGNCC	2 cut(s)	114, 1043
PsuI	RGATCY	1 cut(s)	977
RsaI	GTAC	3 cut(s)	482, 756, 1135
RsaNI	GTAC	3 cut(s)	481, 755, 1134
RseI	CAYNNNNRTG	2 cut(s)	348, 595
SaqAI	TTAA	4 cut(s)	164, 197, 677, 1226
SatI	GCNGC	3 cut(s)	804, 1065, 1089
Sau3AI	GATC	7 cut(s)	108, 131, 580, 820, 853, 977, 1018
Sau96I	GGNCC	2 cut(s)	114, 1043
ScaI	AGTACT	1 cut(s)	482
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	2 cut(s)	101, 192
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	3 cut(s)	99, 294, 641
SfcI	CTRYAG	5 cut(s)	431, 484, 998, 1191, 1231
SinI	GGWCC	2 cut(s)	114, 1043
SmiMI	CAYNNNNRTG	2 cut(s)	348, 595
SphI	GCATGC	1 cut(s)	1241
SsiI	CCGC	1 cut(s)	804
SspMI	CTAG	2 cut(s)	183, 870
StyD4I	CCNGG	2 cut(s)	99, 190
TaaI	ACNGT	5 cut(s)	408, 488, 759, 955, 1232
TaqI	TCGA	2 cut(s)	130, 856
TatI	WGTACW	2 cut(s)	480, 1133
TauI	GCSGC	1 cut(s)	806
TfiI	GAWTC	2 cut(s)	1028, 1214
Tru1I	TTAA	4 cut(s)	164, 197, 677, 1226
Tru9I	TTAA	4 cut(s)	164, 197, 677, 1226
TscAI	CASTG	4 cut(s)	157, 331, 958, 1191
TseFI	GTSAC	2 cut(s)	738, 1186
TseI	GCWGC	2 cut(s)	1064, 1088
Tsp45I	GTSAC	2 cut(s)	738, 1186
TspDTI	ATGAA	6 cut(s)	61, 113, 126, 630, 705, 1026
TspGWI	ACGGA	1 cut(s)	1011
TspRI	CASTG	4 cut(s)	157, 331, 958, 1191
VpaK11BI	GGWCC	2 cut(s)	114, 1043
XapI	RAATTY	8 cut(s)	120, 143, 610, 673, 766, 815, 1013, 1174
XceI	RCATGY	1 cut(s)	1241
XmnI	GAANNNNTTC	2 cut(s)	400, 721
XspI	CTAG	2 cut(s)	183, 870
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.