Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009395.1

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Reverse (-)

21893 .. 22396

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009395.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggaggattataagttaagggatgaccaaaaggaacaagctagtgtccctgttgttgatgtcaaagttctcagaacttcttctccatccacacccagtaatccaagccaagcaaccactgttcaaccttcttctccttttgcaagctataatacaagccaagcaactactagtccagttacttctgcattgtctgcaaaacaagaaccagagccttttgatgaatttgatccacgtagttctgtttcaggtgatccatttggttatgtttcaactgccccaactacttcaaacaaggcagcaacggacttacttggttccctgttattggtcattgtttcttgtacatctattactaccatatctgaagttgatggccttataaattctgcttcagtgacttcatttatggcaacttctccagatactactatgttgaactataggcaggtctcttatcctctgaagctatgccaatcactgccactcattcctcctggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0008289 GO:0012505 GO:0016020 GO:0030276 GO:0031090 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

167

Amino Acids

17.7

Weight (kDa)

4.44

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	12, 383
Acc36I	ACCTGC	1 cut(s)	439
AclWI	GGATC	2 cut(s)	224, 248
AcsI	RAATTY	2 cut(s)	224, 385
AcuI	CTGAAG	3 cut(s)	378, 387, 485
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	4 cut(s)	125, 273, 291, 439
AhlI	ACTAGT	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	496
AloI	GAACNNNNNNTCC	2 cut(s)	67, 99
AluBI	AGCT	3 cut(s)	41, 147, 469
AluI	AGCT	3 cut(s)	41, 147, 469
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	2 cut(s)	224, 248
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	2 cut(s)	224, 385
Asp700I	GAANNNNTTC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	2 cut(s)	94, 368
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	457
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	2 cut(s)	42, 171
BfmI	CTRYAG	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	498
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	498
BmrI	ACTGGG	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	2 cut(s)	96, 176
BseBI	CCWGG	1 cut(s)	498
BseGI	GGATG	2 cut(s)	28, 86
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	2 cut(s)	96, 176
BseXI	GCAGC	1 cut(s)	311
BshFI	GGCC	1 cut(s)	378
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	378
Bso31I	GGTCTC	1 cut(s)	457
Bsp1407I	TGTACA	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	229, 253
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	2 cut(s)	224, 248
BspTNI	GGTCTC	1 cut(s)	457
BsrGI	TGTACA	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	96, 176
BssMI	GATC	2 cut(s)	229, 253
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	28, 86
BstKTI	GATC	2 cut(s)	232, 256
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	2 cut(s)	229, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	28, 86
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	3 cut(s)	117, 402, 479
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	345
CviJI	RGCY	7 cut(s)	41, 108, 147, 159, 214, 378, 469
CviKI_1	RGCY	7 cut(s)	41, 108, 147, 159, 214, 378, 469
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	2 cut(s)	231, 255
DpnII	GATC	2 cut(s)	229, 253
Eco31I	GGTCTC	1 cut(s)	457
Eco57I	CTGAAG	3 cut(s)	378, 387, 485
EcoRII	CCWGG	1 cut(s)	496
FaiI	YATR	9 cut(s)	12, 150, 267, 362, 383, 410, 434, 444, 472
FaqI	GGGAC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	2 cut(s)	35, 73
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	2 cut(s)	42, 171
GluI	GCNGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	378
HphI	GGTGA	1 cut(s)	263
Hpy188I	TCNGA	3 cut(s)	74, 367, 465
Hpy188III	TCNNGA	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	143, 188, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	229, 253
LpnPI	CCDG	9 cut(s)	63, 109, 189, 222, 234, 335, 434, 435, 483
Lsp1109I	GCAGC	1 cut(s)	311
MaeI	CTAG	2 cut(s)	42, 171
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	2 cut(s)	178, 397
MalI	GATC	2 cut(s)	231, 255
MboI	GATC	2 cut(s)	229, 253
MboII	GAAGA	2 cut(s)	72, 123
MluCI	AATT	2 cut(s)	224, 385
MnlI	CCTC	2 cut(s)	471, 504
MroXI	GAANNNNTTC	1 cut(s)	79
MseI	TTAA	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	2 cut(s)	229, 253
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	236
PsiI	TTATAA	2 cut(s)	12, 383
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	319
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	229, 253
ScrFI	CCNGG	1 cut(s)	498
SetI	ASST	7 cut(s)	43, 130, 149, 238, 253, 453, 471
SfcI	CTRYAG	1 cut(s)	442
SpeI	ACTAGT	1 cut(s)	170
Sse9I	AATT	2 cut(s)	224, 385
SspMI	CTAG	2 cut(s)	42, 171
StyD4I	CCNGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	238
TasI	AATT	2 cut(s)	224, 385
TatI	WGTACW	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	3 cut(s)	124, 402, 486
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	237, 393
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	3 cut(s)	124, 402, 486
XapI	RAATTY	2 cut(s)	224, 385
XmnI	GAANNNNTTC	1 cut(s)	79
XspI	CTAG	2 cut(s)	42, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.