Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Forward (+)

12547252 .. 12552838

Gene Structure 5587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG142000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCAATGGAATGGTGATGATATTGGTAGTATGGTGTCTCCTGCTGTTTTTGTCGCTCAAAATGGAGGGGGAAGTCACATGTTCTACAATGGAGGGATGCAGCAACATAATTTGAGCATTGGAACAAATGGTTACTATTCCAATCATCAGCAACTTGCTTCAAACTACAAAGGGAATGTCTCACAGTATAATGGTATTGGCTTCTTCCTACAGCAACCTGTTGTTCAAAATCAACAAAATGGCGGAAACAAGAACTACAGTTCACATGGAGGTGTATCTCAATTACCTGACATTTCAAATCAAGATTTTGGTGGCTTCATTTGCAACAAACTTGGACATGATCACTTGGCATCTGTGAATAAATTTGATCAGGGTATATTTGATGCTGCTGATGATGACAAATTAAGCAAGGGGAAGGAGCAGGAACAAGTGGAAACTGATGGCCAAACTATAGTAGTGCAATTGGCCGACAATGAGAAGATGAATGCTGATGATCAGAGCAAGTCGAAGATTAGTGGAATTCTTGAGTTTGGGACTGGTTATGCATCCGTGTTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.1

Weight (kDa)

4.85

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	243
AcoI	YGGCCR	2 cut(s)	442, 465
AcsI	RAATTY	2 cut(s)	362, 519
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	162, 227, 297
Alw26I	GTCTC	2 cut(s)	42, 184
AoxI	GGCC	2 cut(s)	442, 465
ApeKI	GCWGC	2 cut(s)	100, 386
ApoI	RAATTY	2 cut(s)	362, 519
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AsuHPI	GGTGA	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	112, 373
BccI	CCATC	1 cut(s)	434
BclI	TGATCA	3 cut(s)	340, 367, 493
BcoDI	GTCTC	2 cut(s)	42, 184
BfmI	CTRYAG	3 cut(s)	209, 256, 450
BisI	GCNGC	2 cut(s)	101, 387
BlsI	GCNGC	2 cut(s)	102, 388
BmsI	GCATC	4 cut(s)	87, 359, 373, 554
BpuEI	CTTGAG	1 cut(s)	545
Bse1I	ACTGG	1 cut(s)	541
Bse3DI	GCAATG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	102, 545
BseMI	GCAATG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	541
BseXI	GCAGC	2 cut(s)	112, 373
BshFI	GGCC	2 cut(s)	444, 467
BslFI	GGGAC	1 cut(s)	547
BsmAI	GTCTC	2 cut(s)	42, 184
BsmFI	GGGAC	1 cut(s)	547
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	2 cut(s)	444, 467
Bsp143I	GATC	3 cut(s)	340, 367, 493
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	2 cut(s)	444, 467
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	541
BssMI	GATC	3 cut(s)	340, 367, 493
Bst4CI	ACNGT	2 cut(s)	186, 260
BstF5I	GGATG	2 cut(s)	102, 545
BstKTI	GATC	3 cut(s)	343, 370, 496
BstMAI	GTCTC	2 cut(s)	42, 184
BstMBI	GATC	3 cut(s)	340, 367, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	82
BstSFI	CTRYAG	3 cut(s)	209, 256, 450
BstV1I	GCAGC	2 cut(s)	112, 373
BsuRI	GGCC	2 cut(s)	444, 467
BtsCI	GGATG	2 cut(s)	102, 545
CviAII	CATG	3 cut(s)	79, 266, 338
CviJI	RGCY	4 cut(s)	201, 315, 444, 467
CviKI_1	RGCY	4 cut(s)	201, 315, 444, 467
DpnI	GATC	3 cut(s)	342, 369, 495
DpnII	GATC	3 cut(s)	340, 367, 493
EaeI	YGGCCR	2 cut(s)	442, 465
EciI	GGCGGA	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	519
EcoT22I	ATGCAT	1 cut(s)	547
FaeI	CATG	3 cut(s)	82, 269, 341
FaiI	YATR	9 cut(s)	32, 80, 108, 189, 267, 339, 377, 452, 543
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	3 cut(s)	78, 265, 337
FbaI	TGATCA	3 cut(s)	340, 367, 493
Fnu4HI	GCNGC	2 cut(s)	101, 387
FokI	GGATG	2 cut(s)	109, 532
Fsp4HI	GCNGC	2 cut(s)	101, 387
GluI	GCNGC	2 cut(s)	101, 387
HaeIII	GGCC	2 cut(s)	444, 467
Hin1II	CATG	3 cut(s)	82, 269, 341
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	2 cut(s)	302, 524
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	2 cut(s)	186, 260
HpyCH4V	TGCA	5 cut(s)	4, 100, 324, 460, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
Hsp92II	CATG	3 cut(s)	82, 269, 341
Ksp22I	TGATCA	3 cut(s)	340, 367, 493
Kzo9I	GATC	3 cut(s)	340, 367, 493
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	6 cut(s)	54, 231, 300, 356, 407, 522
Lsp1109I	GCAGC	2 cut(s)	112, 373
LweI	GCATC	4 cut(s)	87, 359, 373, 554
MaeIII	GTNAC	2 cut(s)	74, 131
MalI	GATC	3 cut(s)	342, 369, 495
MboI	GATC	3 cut(s)	340, 367, 493
MboII	GAAGA	3 cut(s)	196, 490, 520
MfeI	CAATTG	1 cut(s)	461
MlsI	TGGCCA	1 cut(s)	444
MluCI	AATT	7 cut(s)	109, 281, 362, 401, 461, 519, 555
MluNI	TGGCCA	1 cut(s)	444
MnlI	CCTC	3 cut(s)	59, 86, 263
Mox20I	TGGCCA	1 cut(s)	444
Mph1103I	ATGCAT	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	444
MseI	TTAA	2 cut(s)	404, 554
MslI	CAYNNNNRTG	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	444
MunI	CAATTG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	321
NdeII	GATC	3 cut(s)	340, 367, 493
NlaIII	CATG	3 cut(s)	82, 269, 341
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	82
PciI	ACATGT	1 cut(s)	78
PctI	GAATGC	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	102, 388
PscI	ACATGT	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	404, 554
SatI	GCNGC	2 cut(s)	101, 387
Sau3AI	GATC	3 cut(s)	340, 367, 493
SetI	ASST	3 cut(s)	220, 274, 289
SfaNI	GCATC	4 cut(s)	87, 359, 373, 554
SfcI	CTRYAG	3 cut(s)	209, 256, 450
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	7 cut(s)	109, 281, 362, 401, 461, 519, 555
SsiI	CCGC	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	186, 260
TaqI	TCGA	1 cut(s)	506
TasI	AATT	7 cut(s)	109, 281, 362, 401, 461, 519, 555
Tru1I	TTAA	2 cut(s)	404, 554
Tru9I	TTAA	2 cut(s)	404, 554
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	2 cut(s)	100, 386
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	307, 497
TspGWI	ACGGA	1 cut(s)	538
XapI	RAATTY	2 cut(s)	362, 519
XceI	RCATGY	1 cut(s)	82
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.