Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007729.1

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Forward (+)

16137 .. 18420

Gene Structure 2284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007729.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

atgctatcgacagcctatcgacatgctgtcgacatggatgccgagttcttcagacaacgtgaaacattatcttttgtggttggaagcaataattcatgtgaagtttggaaaaatttgagagtgagatatggtgtctcttctagagcagccgctatgcaactccaaacaaacttgtacacaattcaaaaaggtaatgacactataaacaagtattttcggcatatcaaggacattactgatcaattagcttctgttggcattcatattccagaagaagagattattatcattgctgtcaatgcccttccgtctgaatacttgaatatcaaaattgtggtcaaagctcttatcacaactatgtcaatgaacaaattgcgttatgttttacttgatgaggaatctactatggatcaatctacaaagactatgcagtatagtatgcctactagtaatccaagtttaaatcaaggactgcaatggaatggctctactgctaatattggtagtatggtgtcacctgctgtttttgttaatcaaaatggagggggaggttatatgtcttacaatgaaggaatgccgaaacataatttgagcactggaacaagaaataatgagctctctccattttctaatgttgctacttgttatagtgcatccgaaaaaccacatgtttcatgtaaggatgaggatatctattgcaactctcaatggcttgaggtactagaaaagtataatgttggtaaagcttcaacagttgtcaataaatttgatcaagtcatgggggctcataagataagggatgaccaaaaggcacaagctagtgtccctgttgttgatgttagagtttctgcacccagagcttcttctctacccacacctagtaatccaagccaagcaaccactgttcaagctttttatgctcctagggcttctcctcttcctgcaagctataatacaagccaaaaaactactattccagttacttctgcatcatctgcaaaacagggtctagagccttttgatgaatttgatccacgtagttctgtgtcgggtgatccatttggttttgtttcagctgcccctactacttcaaacaaggctacgatggacttacttggttccctgttattggccattatgccttgtatatctactactaccacatttgaagttgatggccttgtaaattctaccccagtgactacctttatggcaactcctccagatactactatgttgaactgttggcaggtcttttatcctttgaagctatgccactcattgccattcattcctcctggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0008289 GO:0012505 GO:0016020 GO:0030276 GO:0031090 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

434

Amino Acids

47.5

Weight (kDa)

6.19

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	526
Acc36I	ACCTGC	2 cut(s)	526, 1240
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	3 cut(s)	417, 1025, 1049
AcoI	YGGCCR	1 cut(s)	1131
AcsI	RAATTY	4 cut(s)	112, 764, 1025, 1186
AcuI	CTGAAG	1 cut(s)	34
AfaI	GTAC	2 cut(s)	176, 720
AfiI	CCNNNNNNNGG	1 cut(s)	1129
AflIII	ACRYGT	1 cut(s)	667
AgsI	TTSAA	8 cut(s)	185, 322, 750, 908, 1092, 1169, 1240, 1267
AhdI	GACNNNNNGTC	1 cut(s)	26
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	1297
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
Alw21I	GWGCWC	2 cut(s)	596, 618
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	3 cut(s)	417, 1025, 1049
AoxI	GGCC	2 cut(s)	1131, 1177
ApeKI	GCWGC	2 cut(s)	146, 1076
ApoI	RAATTY	4 cut(s)	112, 764, 1025, 1186
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspA2I	CCTAGG	1 cut(s)	923
AsuHPI	GGTGA	2 cut(s)	507, 1064
AvrII	CCTAGG	1 cut(s)	923
BalI	TGGCCA	1 cut(s)	1133
BanII	GRGCYC	2 cut(s)	618, 787
Bbv12I	GWGCWC	2 cut(s)	596, 618
BbvI	GCAGC	2 cut(s)	158, 1063
BccI	CCATC	2 cut(s)	1099, 1169
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	1299
BclI	TGATCA	2 cut(s)	238, 769
BcoDI	GTCTC	1 cut(s)	139
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	7 cut(s)	141, 447, 722, 819, 879, 924, 1010
BfuAI	ACCTGC	2 cut(s)	526, 1240
BisI	GCNGC	3 cut(s)	147, 150, 1077
BlnI	CCTAGG	1 cut(s)	923
BlsI	GCNGC	3 cut(s)	148, 151, 1078
Bme1390I	CCNGG	1 cut(s)	1299
BmeRI	GACNNNNNGTC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	1120
BmrFI	CCNGG	1 cut(s)	1299
BmrI	ACTGGG	1 cut(s)	1190
BmsI	GCATC	3 cut(s)	28, 662, 998
BmuI	ACTGGG	1 cut(s)	1190
BpmI	CTGGAG	1 cut(s)	1206
BpuEI	CTTGAG	1 cut(s)	734
BsaAI	YACGTR	1 cut(s)	1037
BsaBI	GATNNNNATC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	923
Bsc4I	CCNNNNNNNGG	1 cut(s)	1129
Bse1I	ACTGG	3 cut(s)	601, 977, 1196
Bse3DI	GCAATG	3 cut(s)	288, 482, 1280
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	1299
BseDI	CCNNGG	1 cut(s)	923
BseGI	GGATG	4 cut(s)	43, 653, 688, 805
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	1129
BseMI	GCAATG	3 cut(s)	288, 482, 1280
BseNI	ACTGG	3 cut(s)	601, 977, 1196
BseRI	GAGGAG	2 cut(s)	924, 1209
BseXI	GCAGC	2 cut(s)	158, 1063
BsgI	GTGCAG	1 cut(s)	834
BshFI	GGCC	2 cut(s)	1133, 1179
BsiHKAI	GWGCWC	2 cut(s)	596, 618
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	1 cut(s)	1129
BsmAI	GTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	809
BsmI	GAATGC	2 cut(s)	258, 579
BsnI	GGCC	2 cut(s)	1133, 1179
Bsp1286I	GDGCHC	3 cut(s)	596, 618, 787
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	5 cut(s)	238, 409, 769, 1030, 1054
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	1133, 1179
BspLI	GGNNCC	1 cut(s)	1120
BspMI	ACCTGC	2 cut(s)	526, 1240
BspPI	GGATC	3 cut(s)	417, 1025, 1049
BsrDI	GCAATG	3 cut(s)	288, 482, 1280
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	601, 977, 1196
BssECI	CCNNGG	1 cut(s)	923
BssMI	GATC	5 cut(s)	238, 409, 769, 1030, 1054
BssT1I	CCWWGG	1 cut(s)	923
Bst2UI	CCWGG	1 cut(s)	1299
Bst4CI	ACNGT	3 cut(s)	754, 904, 1244
Bst6I	CTCTTC	3 cut(s)	142, 270, 942
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstAUI	TGTACA	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	1037
BstC8I	GCNNGC	1 cut(s)	946
BstF5I	GGATG	4 cut(s)	43, 653, 688, 805
BstKTI	GATC	5 cut(s)	241, 412, 772, 1033, 1057
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	5 cut(s)	238, 409, 769, 1030, 1054
BstMWI	GCNNNNNNNGC	5 cut(s)	299, 857, 917, 926, 995
BstNI	CCWGG	1 cut(s)	1299
BstNSI	RCATGY	2 cut(s)	26, 671
BstSCI	CCNGG	1 cut(s)	1297
BstV1I	GCAGC	2 cut(s)	158, 1063
BsuRI	GGCC	2 cut(s)	1133, 1179
BtsCI	GGATG	4 cut(s)	43, 653, 688, 805
BtsIMutI	CAGTG	3 cut(s)	594, 900, 1203
BveI	ACCTGC	2 cut(s)	526, 1240
Cac8I	GCNNGC	1 cut(s)	946
Csp6I	GTAC	2 cut(s)	175, 719
CviAII	CATG	6 cut(s)	23, 34, 96, 668, 675, 778
CviQI	GTAC	2 cut(s)	175, 719
DpnI	GATC	5 cut(s)	240, 411, 771, 1032, 1056
DpnII	GATC	5 cut(s)	238, 409, 769, 1030, 1054
DraI	TTTAAA	1 cut(s)	462
DriI	GACNNNNNGTC	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	1131
Eam1104I	CTCTTC	3 cut(s)	142, 270, 942
Eam1105I	GACNNNNNGTC	1 cut(s)	26
EarI	CTCTTC	3 cut(s)	142, 270, 942
Ecl136II	GAGCTC	1 cut(s)	616
Eco130I	CCWWGG	1 cut(s)	923
Eco24I	GRGCYC	2 cut(s)	618, 787
Eco32I	GATATC	1 cut(s)	691
Eco53kI	GAGCTC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	1297
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	923
EcoT38I	GRGCYC	2 cut(s)	618, 787
ErhI	CCWWGG	1 cut(s)	923
FaeI	CATG	6 cut(s)	26, 37, 99, 671, 678, 781
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	6 cut(s)	22, 33, 95, 667, 674, 777
FbaI	TGATCA	2 cut(s)	238, 769
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	147, 150, 1077
FokI	GGATG	4 cut(s)	50, 640, 695, 812
FriOI	GRGCYC	2 cut(s)	618, 787
Fsp4HI	GCNGC	3 cut(s)	147, 150, 1077
FspBI	CTAG	7 cut(s)	141, 447, 722, 819, 879, 924, 1010
GluI	GCNGC	3 cut(s)	147, 150, 1077
GsuI	CTGGAG	1 cut(s)	1206
HaeIII	GGCC	2 cut(s)	1133, 1179
Hin1II	CATG	6 cut(s)	26, 37, 99, 671, 678, 781
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	2 cut(s)	744, 909
HinfI	GANTC	1 cut(s)	398
HphI	GGTGA	2 cut(s)	507, 1064
Hpy166II	GTNNAC	2 cut(s)	31, 177
Hpy188I	TCNGA	3 cut(s)	53, 313, 658
Hpy188III	TCNNGA	4 cut(s)	141, 269, 1010, 1223
Hpy8I	GTNNAC	2 cut(s)	31, 177
HpyAV	CCTTC	2 cut(s)	314, 563
HpyCH4III	ACNGT	3 cut(s)	754, 904, 1244
HpyCH4IV	ACGT	2 cut(s)	58, 1036
HpyCH4V	TGCA	9 cut(s)	157, 430, 475, 653, 699, 851, 944, 989, 998
HpyF10VI	GCNNNNNNNGC	5 cut(s)	299, 857, 917, 926, 995
HpySE526I	ACGT	2 cut(s)	58, 1036
Hsp92II	CATG	6 cut(s)	26, 37, 99, 671, 678, 781
Ksp22I	TGATCA	2 cut(s)	238, 769
Kzo9I	GATC	5 cut(s)	238, 409, 769, 1030, 1054
LmnI	GCTCC	1 cut(s)	925
Lsp1109I	GCAGC	2 cut(s)	158, 1063
LweI	GCATC	3 cut(s)	28, 662, 998
MaeI	CTAG	7 cut(s)	141, 447, 722, 819, 879, 924, 1010
MaeII	ACGT	2 cut(s)	58, 1036
MaeIII	GTNAC	3 cut(s)	513, 979, 1198
MalI	GATC	5 cut(s)	240, 411, 771, 1032, 1056
MboI	GATC	5 cut(s)	238, 409, 769, 1030, 1054
MboII	GAAGA	6 cut(s)	40, 129, 284, 287, 855, 929
MhlI	GDGCHC	3 cut(s)	596, 618, 787
MlsI	TGGCCA	1 cut(s)	1133
MluNI	TGGCCA	1 cut(s)	1133
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	8 cut(s)	388, 536, 542, 679, 709, 945, 1230, 1305
Mox20I	TGGCCA	1 cut(s)	1133
MscI	TGGCCA	1 cut(s)	1133
MseI	TTAA	3 cut(s)	461, 531, 1303
MslI	CAYNNNNRTG	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	1133
MspA1I	CMGCKG	1 cut(s)	1076
MspR9I	CCNGG	1 cut(s)	1299
Mva1269I	GAATGC	2 cut(s)	258, 579
MvaI	CCWGG	1 cut(s)	1299
MwoI	GCNNNNNNNGC	5 cut(s)	299, 857, 917, 926, 995
NdeII	GATC	5 cut(s)	238, 409, 769, 1030, 1054
NlaIII	CATG	6 cut(s)	26, 37, 99, 671, 678, 781
NlaIV	GGNNCC	1 cut(s)	1120
NmeAIII	GCCGAG	1 cut(s)	67
NmuCI	GTSAC	2 cut(s)	513, 1198
NspI	RCATGY	2 cut(s)	26, 671
PaqCI	CACCTGC	1 cut(s)	526
PciI	ACATGT	1 cut(s)	667
PctI	GAATGC	2 cut(s)	258, 579
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	3 cut(s)	148, 151, 1078
Ppu21I	YACGTR	1 cut(s)	1037
PscI	ACATGT	1 cut(s)	667
Psp124BI	GAGCTC	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	1297
PspGI	CCWGG	1 cut(s)	1297
PspN4I	GGNNCC	1 cut(s)	1120
PvuII	CAGCTG	1 cut(s)	1076
RsaI	GTAC	2 cut(s)	176, 720
RsaNI	GTAC	2 cut(s)	175, 719
RseI	CAYNNNNRTG	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	618
SalI	GTCGAC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	461, 531, 1303
SatI	GCNGC	3 cut(s)	147, 150, 1077
Sau3AI	GATC	5 cut(s)	238, 409, 769, 1030, 1054
ScrFI	CCNGG	1 cut(s)	1299
SduI	GDGCHC	3 cut(s)	596, 618, 787
SfaNI	GCATC	3 cut(s)	28, 662, 998
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
SpeI	ACTAGT	1 cut(s)	446
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	7 cut(s)	141, 447, 722, 819, 879, 924, 1010
SstI	GAGCTC	1 cut(s)	618
StyD4I	CCNGG	1 cut(s)	1297
StyI	CCWWGG	1 cut(s)	923
TaaI	ACNGT	3 cut(s)	754, 904, 1244
TaiI	ACGT	2 cut(s)	61, 1039
TaqI	TCGA	3 cut(s)	8, 19, 30
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	3 cut(s)	461, 531, 1303
Tru9I	TTAA	3 cut(s)	461, 531, 1303
TscAI	CASTG	3 cut(s)	601, 907, 1203
TseFI	GTSAC	2 cut(s)	513, 1198
TseI	GCWGC	2 cut(s)	146, 1076
Tsp45I	GTSAC	2 cut(s)	513, 1198
TspDTI	ATGAA	7 cut(s)	84, 251, 380, 582, 663, 1038, 1279
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	3 cut(s)	601, 907, 1203
XapI	RAATTY	4 cut(s)	112, 764, 1025, 1186
XbaI	TCTAGA	2 cut(s)	140, 1009
XceI	RCATGY	2 cut(s)	26, 671
XmaJI	CCTAGG	1 cut(s)	923
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	7 cut(s)	141, 447, 722, 819, 879, 924, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.