Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006908.1

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Forward (+)

95085 .. 95750

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006908.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgacacaggcaaataatgttggaaacttttctcatagacctatgtcacaacacaatgtggtgcagtctcagaatacaagaactttcagtggcaacttcaactcaaatgcaggcaataatgagcgctctccattttatgatgttgtttcttgttatagtgcattgaaaaaaccatatgtcgcagcggtcaataaatttgatcaagtcaagggggatcacaagataagggatgaccaaaaggcacaaccttgtatccctgttgttgatgttagagtttcggctcccaaagcttcttctccgcctgtaagcaataatccaagccaagcaaccagtgctccagttatttctgtatcgtctgcaaaaccggtattagagccttttgatgaatttgttccatgtggttctgtttcgggtggtccatttgcctctgtttcagctgctccaactacttcaaacaatgctgagatggacttacttggttccccgttattggctattgtgccaagtacatctactactaccacatctgaagttgatggccttttaaattttgctccagtgaccacatttatggcaactcctccagctactactatgttgaactgtaggcaggcctcttatcctctaaagctatggcaatcactgccactcattaatcctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0008289 GO:0012505 GO:0016020 GO:0030276 GO:0031090 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

221

Amino Acids

23.47

Weight (kDa)

6.81

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	185, 299
AclWI	GGATC	1 cut(s)	222
AcsI	RAATTY	3 cut(s)	194, 386, 547
AcuI	CTGAAG	1 cut(s)	549
AdeI	CACNNNGTG	1 cut(s)	58
AfaI	GTAC	1 cut(s)	508
AfeI	AGCGCT	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgeI	ACCGGT	1 cut(s)	364
AgsI	TTSAA	4 cut(s)	100, 166, 453, 601
AluBI	AGCT	4 cut(s)	290, 437, 587, 631
AluI	AGCT	4 cut(s)	290, 437, 587, 631
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	222
Aor51HI	AGCGCT	1 cut(s)	125
AoxI	GGCC	2 cut(s)	538, 612
ApeKI	GCWGC	2 cut(s)	182, 437
ApoI	RAATTY	3 cut(s)	194, 386, 547
AseI	ATTAAT	1 cut(s)	654
AsiGI	ACCGGT	1 cut(s)	364
Asp700I	GAANNNNTTC	2 cut(s)	28, 390
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	194, 424
BccI	CCATC	2 cut(s)	460, 530
BciVI	GTATCC	1 cut(s)	263
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	604
BfoI	RGCGCY	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	183, 438
BlsI	GCNGC	2 cut(s)	184, 439
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	2 cut(s)	282, 481
BoxI	GACNNNNGTC	1 cut(s)	43
BpmI	CTGGAG	3 cut(s)	321, 540, 567
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	330, 338, 557
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	2 cut(s)	83, 453
BseNI	ACTGG	3 cut(s)	330, 338, 557
BseRI	GAGGAG	1 cut(s)	570
BseXI	GCAGC	2 cut(s)	194, 424
BsgI	GTGCAG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	540, 614
BshTI	ACCGGT	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	540, 614
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	199, 214
BspACI	CCGC	2 cut(s)	185, 299
BspANI	GGCC	2 cut(s)	540, 614
BspCNI	CTCAG	2 cut(s)	82, 454
BspLI	GGNNCC	2 cut(s)	282, 481
BspPI	GGATC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	3 cut(s)	330, 338, 557
BssAI	RCCGGY	1 cut(s)	364
BssMI	GATC	2 cut(s)	199, 214
Bst4CI	ACNGT	1 cut(s)	605
BstAPI	GCANNNNNTGC	2 cut(s)	332, 643
BstC8I	GCNNGC	2 cut(s)	112, 612
BstDEI	CTNAG	2 cut(s)	69, 462
BstF5I	GGATG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	2 cut(s)	202, 217
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	199, 214
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 332, 643
BstPAI	GACNNNNGTC	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	604
BstV1I	GCAGC	2 cut(s)	194, 424
BstXI	CCANNNNNNTGG	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	540, 614
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	4 cut(s)	94, 337, 564, 641
Cac8I	GCNNGC	2 cut(s)	112, 612
CfoI	GCGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	507
CspAI	ACCGGT	1 cut(s)	364
CviAII	CATG	1 cut(s)	396
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	2 cut(s)	69, 462
DpnI	GATC	2 cut(s)	201, 216
DpnII	GATC	2 cut(s)	199, 214
DraI	TTTAAA	1 cut(s)	546
DraIII	CACNNNGTG	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	416
Eco47III	AGCGCT	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	549
FaeI	CATG	1 cut(s)	399
FatI	CATG	1 cut(s)	395
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	183, 438
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	183, 438
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	183, 438
GsuI	CTGGAG	3 cut(s)	321, 540, 567
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	540, 614
HapII	CCGG	1 cut(s)	365
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	399
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	288
HpaII	CCGG	1 cut(s)	365
Hpy188I	TCNGA	2 cut(s)	72, 529
Hpy188III	TCNNGA	1 cut(s)	659
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4V	TGCA	4 cut(s)	64, 110, 161, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 332, 643
HpyF3I	CTNAG	2 cut(s)	69, 462
Hsp92II	CATG	1 cut(s)	399
HspAI	GCGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	199, 214
LmnI	GCTCC	4 cut(s)	286, 340, 445, 559
LpnPI	CCDG	9 cut(s)	96, 270, 315, 343, 351, 378, 570, 596, 597
Lsp1109I	GCAGC	2 cut(s)	194, 424
MaeIII	GTNAC	2 cut(s)	45, 559
MalI	GATC	2 cut(s)	201, 216
MboI	GATC	2 cut(s)	199, 214
MboII	GAAGA	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	3 cut(s)	194, 386, 547
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	4 cut(s)	436, 591, 625, 633
MroXI	GAANNNNTTC	2 cut(s)	28, 390
MseI	TTAA	2 cut(s)	545, 654
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	2 cut(s)	185, 437
MspI	CCGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	3 cut(s)	287, 332, 643
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	2 cut(s)	199, 214
NlaIII	CATG	1 cut(s)	399
NlaIV	GGNNCC	2 cut(s)	282, 481
NmuCI	GTSAC	2 cut(s)	45, 559
PceI	AGGCCT	1 cut(s)	614
PdmI	GAANNNNTTC	2 cut(s)	28, 390
PinAI	ACCGGT	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	184, 439
PshAI	GACNNNNGTC	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	282, 481
PspPI	GGNCC	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	545, 654
SatI	GCNGC	2 cut(s)	183, 438
Sau3AI	GATC	2 cut(s)	199, 214
Sau96I	GGNCC	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	6 cut(s)	43, 250, 292, 439, 589, 633
SfcI	CTRYAG	1 cut(s)	604
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	569
Sse9I	AATT	3 cut(s)	194, 386, 547
SseBI	AGGCCT	1 cut(s)	614
SsiI	CCGC	2 cut(s)	185, 299
StuI	AGGCCT	1 cut(s)	614
TaaI	ACNGT	1 cut(s)	605
TasI	AATT	3 cut(s)	194, 386, 547
TatI	WGTACW	1 cut(s)	506
Tru1I	TTAA	2 cut(s)	545, 654
Tru9I	TTAA	2 cut(s)	545, 654
TscAI	CASTG	4 cut(s)	94, 337, 564, 648
TseFI	GTSAC	2 cut(s)	45, 559
TseI	GCWGC	2 cut(s)	182, 437
Tsp45I	GTSAC	2 cut(s)	45, 559
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	4 cut(s)	94, 337, 564, 648
VpaK11BI	GGWCC	1 cut(s)	416
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	3 cut(s)	194, 386, 547
XmnI	GAANNNNTTC	2 cut(s)	28, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.