Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000417.1

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Reverse (-)

24642 .. 25516

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000417.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgactcttatcactgccactttatctagtgaagcattatcttttgtggttggaagcaataattcatgtgaagtatggagaaatttgagggtgagatatggtgtctcttctagaacagctgctatgcaactccaaataaaactgtacacaatccagaaaggtaatgatactatagataagtattttcagcgtatcaaggacattactgatcaattagcttctgttggcattcatattcccgaggaagagattattatcattgttgtcaatggccttccctctaagtacctaactttcaaaatcttgatcaaagctcagattacaactatgacaatgattaaatttcgttctcttttacttgatgaggagtctactatggatcaatctatgaagactatgcagaatggaatgcctactagtaatccagttctaaatcaaggaatgcaatggaatggtgatgatattggtagtatggtgtctcctgctgtttttgttgctcaaaatggagggggaagtcacatgttctacaatggagggatgcagcaacataatttgagcattggaacaaatgctgcgccagctaattcaaacaatgttgcaatggacttacttggttccctgttatctgccattatgccgagtgtatgtacttctaccacatttgaaggtgatggcattgtaaattctgctccagtgactacatttatggcaactcctccagatactactatgttgaactgtaggcatgcctcttatcctctgaagctatgccaatcattgccactcattcctcctggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 gag_pre-integrs rve

Protein Analysis

266

Amino Acids

28.89

Weight (kDa)

6.06

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	387
AcsI	RAATTY	3 cut(s)	82, 341, 682
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	3 cut(s)	146, 287, 649
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	4 cut(s)	298, 588, 665, 736
AhlI	ACTAGT	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	793
AluBI	AGCT	5 cut(s)	119, 218, 314, 581, 766
AluI	AGCT	5 cut(s)	119, 218, 314, 581, 766
Alw26I	GTCTC	2 cut(s)	109, 483
AlwI	GGATC	1 cut(s)	387
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	3 cut(s)	119, 541, 572
ApoI	RAATTY	3 cut(s)	82, 341, 682
AspLEI	GCGC	1 cut(s)	577
AsuHPI	GGTGA	3 cut(s)	103, 467, 680
AvaI	CYCGRG	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	3 cut(s)	106, 553, 559
BccI	CCATC	1 cut(s)	665
BciT130I	CCWGG	1 cut(s)	795
BclI	TGATCA	2 cut(s)	208, 306
BcoDI	GTCTC	2 cut(s)	109, 483
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	3 cut(s)	27, 111, 417
BfmI	CTRYAG	2 cut(s)	171, 739
BisI	GCNGC	3 cut(s)	120, 542, 573
BlsI	GCNGC	3 cut(s)	121, 543, 574
Bme1390I	CCNGG	1 cut(s)	795
BmeT110I	CYCGRG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	1 cut(s)	795
BmsI	GCATC	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	2 cut(s)	675, 702
BsaBI	GATNNNNATC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	240
Bse1I	ACTGG	2 cut(s)	425, 692
Bse3DI	GCAATG	3 cut(s)	452, 606, 776
Bse8I	GATNNNNATC	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	795
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	543
BseJI	GATNNNNATC	1 cut(s)	254
BseMI	GCAATG	3 cut(s)	452, 606, 776
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	2 cut(s)	425, 692
BseRI	GAGGAG	2 cut(s)	380, 705
BseXI	GCAGC	3 cut(s)	106, 553, 559
BshFI	GGCC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	109, 483
BsmI	GAATGC	3 cut(s)	228, 414, 447
BsnI	GGCC	1 cut(s)	273
BsoBI	CYCGRG	1 cut(s)	239
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	208, 306, 379
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	616
BspPI	GGATC	1 cut(s)	387
BsrDI	GCAATG	3 cut(s)	452, 606, 776
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	425, 692
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	208, 306, 379
Bst2UI	CCWGG	1 cut(s)	795
Bst4CI	ACNGT	2 cut(s)	144, 740
Bst6I	CTCTTC	2 cut(s)	112, 240
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	579, 747
BstDEI	CTNAG	2 cut(s)	282, 315
BstF5I	GGATG	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	3 cut(s)	211, 309, 382
BstMAI	GTCTC	2 cut(s)	109, 483
BstMBI	GATC	3 cut(s)	208, 306, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	795
BstNSI	RCATGY	2 cut(s)	523, 749
BstSCI	CCNGG	1 cut(s)	793
BstSFI	CTRYAG	2 cut(s)	171, 739
BstV1I	GCAGC	3 cut(s)	106, 553, 559
BstV2I	GAAGAC	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	543
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 699
Cac8I	GCNNGC	2 cut(s)	579, 747
CfoI	GCGC	1 cut(s)	577
Csp6I	GTAC	3 cut(s)	145, 286, 648
CviAII	CATG	3 cut(s)	66, 520, 746
CviJI	RGCY	6 cut(s)	119, 218, 273, 314, 581, 766
CviKI_1	RGCY	6 cut(s)	119, 218, 273, 314, 581, 766
CviQI	GTAC	3 cut(s)	145, 286, 648
DdeI	CTNAG	2 cut(s)	282, 315
DpnI	GATC	3 cut(s)	210, 308, 381
DpnII	GATC	3 cut(s)	208, 306, 379
Eam1104I	CTCTTC	2 cut(s)	112, 240
EarI	CTCTTC	2 cut(s)	112, 240
Eco57I	CTGAAG	1 cut(s)	782
Eco88I	CYCGRG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	793
FaeI	CATG	3 cut(s)	69, 523, 749
FatI	CATG	3 cut(s)	65, 519, 745
FbaI	TGATCA	2 cut(s)	208, 306
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	3 cut(s)	120, 542, 573
FokI	GGATG	1 cut(s)	550
Fsp4HI	GCNGC	3 cut(s)	120, 542, 573
FspBI	CTAG	3 cut(s)	27, 111, 417
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	3 cut(s)	120, 542, 573
GsuI	CTGGAG	2 cut(s)	675, 702
HaeIII	GGCC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	3 cut(s)	69, 523, 749
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HinfI	GANTC	2 cut(s)	4, 368
HphI	GGTGA	3 cut(s)	103, 467, 680
Hpy166II	GTNNAC	2 cut(s)	147, 372
Hpy188I	TCNGA	2 cut(s)	318, 762
Hpy188III	TCNNGA	5 cut(s)	111, 154, 239, 304, 719
Hpy8I	GTNNAC	2 cut(s)	147, 372
HpyAV	CCTTC	2 cut(s)	284, 659
HpyCH4III	ACNGT	2 cut(s)	144, 740
HpyCH4V	TGCA	5 cut(s)	127, 400, 445, 541, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	2 cut(s)	282, 315
Hsp92II	CATG	3 cut(s)	69, 523, 749
HspAI	GCGC	1 cut(s)	575
Ksp22I	TGATCA	2 cut(s)	208, 306
Kzo9I	GATC	3 cut(s)	208, 306, 379
LmnI	GCTCC	1 cut(s)	694
LpnPI	CCDG	8 cut(s)	167, 438, 495, 591, 632, 705, 732, 780
Lsp1109I	GCAGC	3 cut(s)	106, 553, 559
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	3 cut(s)	27, 111, 417
MaeIII	GTNAC	2 cut(s)	515, 694
MalI	GATC	3 cut(s)	210, 308, 381
MboI	GATC	3 cut(s)	208, 306, 379
MboII	GAAGA	3 cut(s)	99, 257, 403
MluCI	AATT	7 cut(s)	61, 82, 212, 341, 550, 583, 682
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	31
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	795
Mva1269I	GAATGC	3 cut(s)	228, 414, 447
MvaI	CCWGG	1 cut(s)	795
MwoI	GCNNNNNNNGC	1 cut(s)	578
NdeII	GATC	3 cut(s)	208, 306, 379
NlaIII	CATG	3 cut(s)	69, 523, 749
NlaIV	GGNNCC	1 cut(s)	616
NmeAIII	GCCGAG	1 cut(s)	663
NmuCI	GTSAC	2 cut(s)	515, 694
NspI	RCATGY	2 cut(s)	523, 749
PaeI	GCATGC	1 cut(s)	749
PciI	ACATGT	1 cut(s)	519
PctI	GAATGC	3 cut(s)	228, 414, 447
PfoI	TCCNGGA	1 cut(s)	793
PkrI	GCNGC	3 cut(s)	121, 543, 574
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PscI	ACATGT	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	793
PspN4I	GGNNCC	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	3 cut(s)	146, 287, 649
RsaNI	GTAC	3 cut(s)	145, 286, 648
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	120, 542, 573
Sau3AI	GATC	3 cut(s)	208, 306, 379
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	795
SetI	ASST	8 cut(s)	121, 163, 220, 291, 316, 583, 670, 768
SfaNI	GCATC	1 cut(s)	528
SfcI	CTRYAG	2 cut(s)	171, 739
SpeI	ACTAGT	1 cut(s)	416
SphI	GCATGC	1 cut(s)	749
Sse9I	AATT	7 cut(s)	61, 82, 212, 341, 550, 583, 682
SspMI	CTAG	3 cut(s)	27, 111, 417
StyD4I	CCNGG	1 cut(s)	793
TaaI	ACNGT	2 cut(s)	144, 740
TasI	AATT	7 cut(s)	61, 82, 212, 341, 550, 583, 682
TatI	WGTACW	2 cut(s)	144, 647
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	19, 699
TseFI	GTSAC	2 cut(s)	515, 694
TseI	GCWGC	3 cut(s)	119, 541, 572
Tsp45I	GTSAC	2 cut(s)	515, 694
TspDTI	ATGAA	3 cut(s)	54, 221, 404
TspRI	CASTG	2 cut(s)	19, 699
XapI	RAATTY	3 cut(s)	82, 341, 682
XbaI	TCTAGA	1 cut(s)	110
XceI	RCATGY	2 cut(s)	523, 749
XmiI	GTMKAC	1 cut(s)	371
XspI	CTAG	3 cut(s)	27, 111, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.