Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000436.1

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Forward (+)

24094 .. 24564

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000436.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgacgaaccaaagtaatgggtctcaaattggttcacagagctctgcttctttgtcaaccctatgtttcagagcttcttctcctcctgcaagctataatccaagccaagcaagtagtgctccagttacttttgcatcttctgcaaaactggaaccaaagctttttgatgagtttaatccatgtggttctgtttcgggtggtccttttggttctgttttagctgccccaactacttcaaacaatgctgcgatggacttacttaattccctgttattggcctttgtgcccagtacatctactactactactaaatctgaagttgatggccttgtaaatactccttcagtgactacatttatagcaacttctccaaatactactatgttgaactgtaagcaggcttcccgacctatatatggagctatggcgatcacttcccctcattcctccgggttgacacaagtattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0008289 GO:0012505 GO:0016020 GO:0030276 GO:0031090 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

156

Amino Acids

15.94

Weight (kDa)

6.52

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	327, 336
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	2 cut(s)	274, 416
AgsI	TTSAA	2 cut(s)	237, 388
AluBI	AGCT	6 cut(s)	42, 74, 93, 160, 221, 422
AluI	AGCT	6 cut(s)	42, 74, 93, 160, 221, 422
Alw21I	GWGCWC	2 cut(s)	44, 121
Alw26I	GTCTC	1 cut(s)	27
AoxI	GGCC	2 cut(s)	276, 325
ApeKI	GCWGC	2 cut(s)	221, 245
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	44
BarI	GAAGNNNNNNTAC	2 cut(s)	385, 417
Bbv12I	GWGCWC	2 cut(s)	44, 121
BbvI	GCAGC	2 cut(s)	208, 232
BccI	CCATC	2 cut(s)	244, 317
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	27
BisI	GCNGC	2 cut(s)	222, 246
BlsI	GCNGC	2 cut(s)	223, 247
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	451
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	451
BsaI	GGTCTC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 416
Bse1I	ACTGG	3 cut(s)	122, 153, 288
BseLI	CCNNNNNNNGG	2 cut(s)	274, 416
BseNI	ACTGG	3 cut(s)	122, 153, 288
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	208, 232
BshFI	GGCC	2 cut(s)	278, 327
BsiHKAI	GWGCWC	2 cut(s)	44, 121
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	274, 416
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	2 cut(s)	278, 327
Bso31I	GGTCTC	1 cut(s)	27
Bsp1286I	GDGCHC	3 cut(s)	44, 121, 288
Bsp143I	GATC	1 cut(s)	429
BspANI	GGCC	2 cut(s)	278, 327
BspLI	GGNNCC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	27
BsrI	ACTGG	3 cut(s)	122, 153, 288
BssMI	GATC	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	392
BstAPI	GCANNNNNTGC	2 cut(s)	116, 140
BstC8I	GCNNGC	2 cut(s)	91, 399
BstKTI	GATC	1 cut(s)	432
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 140
BstSCI	CCNGG	1 cut(s)	449
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	208, 232
BstXI	CCANNNNNNTGG	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	278, 327
BtgZI	GCGATG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	91, 399
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	1 cut(s)	180
CviQI	GTAC	1 cut(s)	291
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
Ecl136II	GAGCTC	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	42
Eco57I	CTGAAG	2 cut(s)	327, 336
EcoICRI	GAGCTC	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	1 cut(s)	183
FaiI	YATR	9 cut(s)	64, 96, 181, 359, 383, 413, 415, 417, 425
FatI	CATG	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	222, 246
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	222, 246
GluI	GCNGC	2 cut(s)	222, 246
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	278, 327
HapII	CCGG	1 cut(s)	450
Hin1II	CATG	1 cut(s)	183
HincII	GTYRAC	2 cut(s)	57, 456
HindII	GTYRAC	2 cut(s)	57, 456
HindIII	AAGCTT	1 cut(s)	158
HpaII	CCGG	1 cut(s)	450
Hpy166II	GTNNAC	3 cut(s)	35, 57, 456
Hpy188I	TCNGA	2 cut(s)	71, 316
Hpy188III	TCNNGA	1 cut(s)	405
Hpy8I	GTNNAC	3 cut(s)	35, 57, 456
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	3 cut(s)	89, 134, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 140
Hsp92II	CATG	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	429
LmnI	GCTCC	2 cut(s)	124, 419
LpnPI	CCDG	7 cut(s)	99, 134, 135, 281, 301, 383, 463
Lsp1109I	GCAGC	2 cut(s)	208, 232
LweI	GCATC	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	124, 346
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	2 cut(s)	69, 129
MhlI	GDGCHC	3 cut(s)	44, 121, 288
MluCI	AATT	2 cut(s)	27, 262
MnlI	CCTC	3 cut(s)	93, 450, 457
MseI	TTAA	2 cut(s)	174, 261
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	1 cut(s)	451
MwoI	GCNNNNNNNGC	2 cut(s)	116, 140
NciI	CCSGG	1 cut(s)	451
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	223, 247
Psp124BI	GAGCTC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SacI	GAGCTC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	174, 261
SatI	GCNGC	2 cut(s)	222, 246
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	451
SduI	GDGCHC	3 cut(s)	44, 121, 288
SetI	ASST	7 cut(s)	44, 76, 95, 162, 223, 412, 424
SfaNI	GCATC	1 cut(s)	143
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	2 cut(s)	27, 262
SstI	GAGCTC	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	392
TasI	AATT	2 cut(s)	27, 262
TatI	WGTACW	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	174, 261
Tru9I	TTAA	2 cut(s)	174, 261
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	2 cut(s)	221, 245
Tsp45I	GTSAC	1 cut(s)	346
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.