Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8201532.1

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 707

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8201532.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

attactgatcaattagcttctgttggcattcatattcccgaggaagagattattatcattgttgtcaatggccttccctctaagtacctaactttcaaaatcttgatcaaagctcagattacaactatgacaatgattaaatttcgttctcttttacttgatgaggagtctactatggatcaatctatgaagactgtgccgaatggaatgcctactagtaatccagttttaaatcaaggaatgcaatggaatggtgctaatattggtagtatggtgtctcctgctgtttttgttgctcaaaatgtagggggaagtcacatgttctacaatggagggatgcagcaacataatttgagcattggaacaagttattcacatccaaatggttactatcccaaacatcagcaacttgcttcaaactacaaaggaaatgtctcactgtataatggtattggcttcttcctacagcaacaaaatggcggaaacaagaactacagttcacaaggatgtgtatctcaattacctgacatttcaaatcaaggctttggtggctccatttgcaacaaacttggacatgatcactcggcatccaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 gag_pre-integrs rve

Protein Analysis

198

Amino Acids

21.5

Weight (kDa)

7.96

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	3 cut(s)	97, 417, 534
AhlI	ACTAGT	1 cut(s)	215
AluBI	AGCT	2 cut(s)	17, 113
AluI	AGCT	2 cut(s)	17, 113
Alw26I	GTCTC	2 cut(s)	282, 439
AlwI	GGATC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	1 cut(s)	140
ArsI	GACNNNNNNTTYG	2 cut(s)	417, 449
AvaI	CYCGRG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BclI	TGATCA	3 cut(s)	7, 105, 577
BcoDI	GTCTC	2 cut(s)	282, 439
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	2 cut(s)	464, 493
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	553
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	197
BsaBI	GATNNNNATC	2 cut(s)	53, 511
BsaJI	CCNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	251
Bse8I	GATNNNNATC	2 cut(s)	53, 511
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	4 cut(s)	342, 376, 512, 587
BseJI	GATNNNNATC	2 cut(s)	53, 511
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	282, 439
BsmI	GAATGC	3 cut(s)	27, 213, 246
BsnI	GGCC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	4 cut(s)	7, 105, 178, 577
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	553
BspPI	GGATC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	4 cut(s)	7, 105, 178, 577
Bst4CI	ACNGT	3 cut(s)	196, 441, 497
Bst6I	CTCTTC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	81, 114
BstF5I	GGATG	4 cut(s)	342, 376, 512, 587
BstKTI	GATC	4 cut(s)	10, 108, 181, 580
BstMAI	GTCTC	2 cut(s)	282, 439
BstMBI	GATC	4 cut(s)	7, 105, 178, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	549, 558
BstNSI	RCATGY	1 cut(s)	322
BstSFI	CTRYAG	2 cut(s)	464, 493
BstV1I	GCAGC	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	4 cut(s)	342, 376, 512, 587
BtsIMutI	CAGTG	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	319, 575
CviJI	RGCY	6 cut(s)	17, 72, 113, 456, 543, 552
CviKI_1	RGCY	6 cut(s)	17, 72, 113, 456, 543, 552
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	81, 114
DpnI	GATC	4 cut(s)	9, 107, 180, 579
DpnII	GATC	4 cut(s)	7, 105, 178, 577
DraI	TTTAAA	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	38
FaeI	CATG	2 cut(s)	322, 578
FaiI	YATR	9 cut(s)	33, 128, 176, 188, 272, 320, 348, 444, 576
FatI	CATG	2 cut(s)	318, 574
FbaI	TGATCA	3 cut(s)	7, 105, 577
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	4 cut(s)	349, 363, 519, 574
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	322, 578
HinfI	GANTC	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	171, 500
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	2 cut(s)	38, 103
Hpy8I	GTNNAC	2 cut(s)	171, 500
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	3 cut(s)	196, 441, 497
HpyCH4V	TGCA	3 cut(s)	244, 340, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	549, 558
HpyF3I	CTNAG	2 cut(s)	81, 114
Hsp92II	CATG	2 cut(s)	322, 578
Ksp22I	TGATCA	3 cut(s)	7, 105, 577
Kzo9I	GATC	4 cut(s)	7, 105, 178, 577
LmnI	GCTCC	1 cut(s)	557
LpnPI	CCDG	3 cut(s)	237, 294, 537
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	314, 386
MalI	GATC	4 cut(s)	9, 107, 180, 579
MboI	GATC	4 cut(s)	7, 105, 178, 577
MboII	GAAGA	3 cut(s)	56, 202, 451
MluCI	AATT	4 cut(s)	11, 140, 349, 518
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	4 cut(s)	34, 88, 157, 326
MseI	TTAA	2 cut(s)	138, 230
MslI	CAYNNNNRTG	2 cut(s)	381, 505
Mva1269I	GAATGC	3 cut(s)	27, 213, 246
MwoI	GCNNNNNNNGC	2 cut(s)	549, 558
NdeII	GATC	4 cut(s)	7, 105, 178, 577
NlaIII	CATG	2 cut(s)	322, 578
NlaIV	GGNNCC	1 cut(s)	553
NmeAIII	GCCGAG	1 cut(s)	563
NmuCI	GTSAC	1 cut(s)	314
NspI	RCATGY	1 cut(s)	322
PciI	ACATGT	1 cut(s)	318
PctI	GAATGC	3 cut(s)	27, 213, 246
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PscI	ACATGT	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	553
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	2 cut(s)	381, 505
SaqAI	TTAA	2 cut(s)	138, 230
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	4 cut(s)	7, 105, 178, 577
SchI	GAGTC	1 cut(s)	176
SetI	ASST	4 cut(s)	19, 90, 115, 526
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	2 cut(s)	464, 493
SmiMI	CAYNNNNRTG	2 cut(s)	381, 505
SpeI	ACTAGT	1 cut(s)	215
Sse9I	AATT	4 cut(s)	11, 140, 349, 518
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	196, 441, 497
TasI	AATT	4 cut(s)	11, 140, 349, 518
Tru1I	TTAA	2 cut(s)	138, 230
Tru9I	TTAA	2 cut(s)	138, 230
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	20, 203
TspRI	CASTG	1 cut(s)	444
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.