Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004465.1

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Reverse (-)

152357 .. 156374

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004465.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atggataccggtaagctggcagcggatgctgacatcgggtttcacggggctccgaatccgtttagagtcagatttgctggcactttcggattcaatggagtctcagtgtggcttcatagtggtaaactaggtctttgggtcggggtagtgatagagcgcttgtggcaactcagagcggcgggttcgctggggcagatggtcggtggcgagacgaggacgacgatgacgtctacggaggtgatactcggtgaaggcgcagatccggcgccatcgatggtcgccaatgttggtggatcggcgcaacctgttgttcaacatcaacaaaatggcggaaacaagaactacagttcacaaggaggtgtatctcaattacttgacatttcaaatcaaggttttggtggcttcatttgcaacaaacttggacatgatcacttggcatctgtgaataaatttgatcaagtcatgggggattacaagataagggatgatcgaaaggcacaagctagtgtcccttttgttgatatcagagtttctaatcccagagcttcttctccacatgcaaccggtaatccaagagaagcaaccactgttcaaacttctgttcccagagcttcttctactcctgcaagctataatccaagccaagtaactagtgtttctgttacttctgcatcgtctgcaaaacaggaaccacagcttattgatgaatttgatccgcgcgattctgtttcgggcggtccatttggttctgtttcagctgcgccagctaattcaaacaatgttgcaatggacttacttggttccctgttatctgccattatgccgagtgtatgtacttctaccacatttgaaggtgatggcattgtaaattctgctccagtgactacatttatggcaactcctccagatactactatgttgaactgtaggcatgcctcttatcctctgaagctatgccaatcattgccactcattcctcctggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0008289 GO:0012505 GO:0016020 GO:0030276 GO:0031090 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

328

Amino Acids

34.25

Weight (kDa)

6.15

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	226
AatII	GACGTC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	265
AccBSI	CCGCTC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	230
AccII	CGCG	2 cut(s)	718, 720
AciI	CCGC	6 cut(s)	23, 176, 179, 330, 716, 735
AclWI	GGATC	3 cut(s)	254, 301, 707
AcsI	RAATTY	3 cut(s)	449, 707, 868
AcuI	CTGAAG	1 cut(s)	968
AcyI	GRCGYC	2 cut(s)	227, 266
AfaI	GTAC	1 cut(s)	835
AfeI	AGCGCT	1 cut(s)	158
AgeI	ACCGGT	2 cut(s)	8, 563
AgsI	TTSAA	7 cut(s)	94, 314, 384, 593, 774, 851, 922
AhlI	ACTAGT	1 cut(s)	650
AjnI	CCWGG	1 cut(s)	979
AluBI	AGCT	9 cut(s)	16, 503, 545, 611, 630, 697, 758, 767, 952
AluI	AGCT	9 cut(s)	16, 503, 545, 611, 630, 697, 758, 767, 952
Alw26I	GTCTC	2 cut(s)	106, 203
AlwI	GGATC	3 cut(s)	254, 301, 707
Aor51HI	AGCGCT	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	20, 758
ApoI	RAATTY	3 cut(s)	449, 707, 868
AsiGI	ACCGGT	2 cut(s)	8, 563
AspLEI	GCGC	6 cut(s)	159, 257, 268, 301, 720, 763
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	3 cut(s)	250, 260, 866
AvaII	GGWCC	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	32, 745
BccI	CCATC	4 cut(s)	190, 268, 277, 851
BciT130I	CCWGG	1 cut(s)	981
BclI	TGATCA	2 cut(s)	427, 454
BcoDI	GTCTC	2 cut(s)	106, 203
BcuI	ACTAGT	1 cut(s)	650
BfaI	CTAG	3 cut(s)	128, 504, 651
BfmI	CTRYAG	2 cut(s)	343, 925
BfoI	RGCGCY	2 cut(s)	160, 269
BisI	GCNGC	3 cut(s)	21, 177, 759
BlsI	GCNGC	3 cut(s)	22, 178, 760
Bme1390I	CCNGG	1 cut(s)	981
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	4 cut(s)	51, 267, 690, 802
BmrFI	CCNGG	1 cut(s)	981
BmsI	GCATC	3 cut(s)	16, 446, 680
BpmI	CTGGAG	2 cut(s)	861, 888
Bsa29I	ATCGAT	1 cut(s)	272
BsaHI	GRCGYC	2 cut(s)	227, 266
BsaWI	WCCGGW	2 cut(s)	8, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bse118I	RCCGGY	2 cut(s)	8, 563
Bse1I	ACTGG	1 cut(s)	878
Bse3DI	GCAATG	2 cut(s)	792, 962
BseBI	CCWGG	1 cut(s)	981
BseCI	ATCGAT	1 cut(s)	272
BseGI	GGATG	2 cut(s)	31, 490
BseMI	GCAATG	2 cut(s)	792, 962
BseMII	CTCAG	2 cut(s)	117, 184
BseNI	ACTGG	1 cut(s)	878
BseRI	GAGGAG	1 cut(s)	891
BseXI	GCAGC	2 cut(s)	32, 745
BseYI	CCCAGC	1 cut(s)	187
Bsh1236I	CGCG	2 cut(s)	718, 720
BshNI	GGYRCC	1 cut(s)	265
BshTI	ACCGGT	2 cut(s)	8, 563
BshVI	ATCGAT	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	9, 263, 564
BslFI	GGGAC	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	106, 203
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	6 cut(s)	259, 293, 427, 454, 487, 712
BspACI	CCGC	6 cut(s)	23, 176, 179, 330, 716, 735
BspCNI	CTCAG	2 cut(s)	116, 183
BspDI	ATCGAT	1 cut(s)	272
BspFNI	CGCG	2 cut(s)	718, 720
BspLI	GGNNCC	4 cut(s)	51, 267, 690, 802
BspPI	GGATC	3 cut(s)	254, 301, 707
BspT107I	GGYRCC	1 cut(s)	265
BsrBI	CCGCTC	1 cut(s)	176
BsrDI	GCAATG	2 cut(s)	792, 962
BsrFI	RCCGGY	2 cut(s)	8, 563
BsrI	ACTGG	1 cut(s)	878
BssAI	RCCGGY	2 cut(s)	8, 563
BssMI	GATC	6 cut(s)	259, 293, 427, 454, 487, 712
BssNI	GRCGYC	2 cut(s)	227, 266
Bst2UI	CCWGG	1 cut(s)	981
Bst4CI	ACNGT	3 cut(s)	347, 589, 926
BstACI	GRCGYC	2 cut(s)	227, 266
BstAPI	GCANNNNNTGC	2 cut(s)	26, 677
BstC8I	GCNNGC	5 cut(s)	18, 79, 628, 765, 933
BstDEI	CTNAG	2 cut(s)	103, 170
BstF5I	GGATG	2 cut(s)	31, 490
BstFNI	CGCG	2 cut(s)	718, 720
BstH2I	RGCGCY	2 cut(s)	160, 269
BstHHI	GCGC	6 cut(s)	159, 257, 268, 301, 720, 763
BstKTI	GATC	6 cut(s)	262, 296, 430, 457, 490, 715
BstMAI	GTCTC	2 cut(s)	106, 203
BstMBI	GATC	6 cut(s)	259, 293, 427, 454, 487, 712
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 163, 263, 408, 677, 764
BstNI	CCWGG	1 cut(s)	981
BstNSI	RCATGY	2 cut(s)	560, 935
BstSCI	CCNGG	1 cut(s)	979
BstSFI	CTRYAG	2 cut(s)	343, 925
BstUI	CGCG	2 cut(s)	718, 720
BstV1I	GCAGC	2 cut(s)	32, 745
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	272
BsuTUI	ATCGAT	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	31, 490
BtsIMutI	CAGTG	3 cut(s)	111, 585, 885
Cac8I	GCNNGC	5 cut(s)	18, 79, 628, 765, 933
CfoI	GCGC	6 cut(s)	159, 257, 268, 301, 720, 763
Cfr10I	RCCGGY	2 cut(s)	8, 563
Cfr13I	GGNCC	1 cut(s)	737
ClaI	ATCGAT	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	834
CspAI	ACCGGT	2 cut(s)	8, 563
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	4 cut(s)	425, 463, 557, 932
CviQI	GTAC	1 cut(s)	834
DdeI	CTNAG	2 cut(s)	103, 170
DinI	GGCGCC	1 cut(s)	267
DpnI	GATC	6 cut(s)	261, 295, 429, 456, 489, 714
DpnII	GATC	6 cut(s)	259, 293, 427, 454, 487, 712
DrdI	GACNNNNNNGTC	1 cut(s)	226
DseDI	GACNNNNNNGTC	1 cut(s)	226
EciI	GGCGGA	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	737
Eco47III	AGCGCT	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	968
EcoRII	CCWGG	1 cut(s)	979
EcoRV	GATATC	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	52
EgeI	GGCGCC	1 cut(s)	267
EheI	GGCGCC	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	4 cut(s)	428, 466, 560, 935
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	4 cut(s)	424, 462, 556, 931
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	2 cut(s)	427, 454
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	3 cut(s)	21, 177, 759
FokI	GGATG	2 cut(s)	38, 497
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	21, 177, 759
FspBI	CTAG	3 cut(s)	128, 504, 651
GlaI	GCGC	6 cut(s)	158, 256, 267, 300, 719, 762
GluI	GCNGC	3 cut(s)	21, 177, 759
GsaI	CCCAGC	1 cut(s)	191
GsuI	CTGGAG	2 cut(s)	861, 888
HaeII	RGCGCY	2 cut(s)	160, 269
HapII	CCGG	3 cut(s)	9, 263, 564
HhaI	GCGC	6 cut(s)	159, 257, 268, 301, 720, 763
Hin1I	GRCGYC	2 cut(s)	227, 266
Hin1II	CATG	4 cut(s)	428, 466, 560, 935
Hin6I	GCGC	6 cut(s)	157, 255, 266, 299, 718, 761
HinP1I	GCGC	6 cut(s)	157, 255, 266, 299, 718, 761
HinfI	GANTC	5 cut(s)	55, 66, 90, 99, 722
HpaII	CCGG	3 cut(s)	9, 263, 564
HphI	GGTGA	3 cut(s)	250, 260, 866
Hpy166II	GTNNAC	3 cut(s)	125, 231, 350
Hpy188I	TCNGA	6 cut(s)	54, 71, 89, 173, 527, 948
Hpy188III	TCNNGA	1 cut(s)	905
Hpy8I	GTNNAC	3 cut(s)	125, 231, 350
Hpy99I	CGWCG	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	245, 845
HpyCH4III	ACNGT	3 cut(s)	347, 589, 926
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	6 cut(s)	411, 560, 626, 671, 680, 785
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 163, 263, 408, 677, 764
HpyF3I	CTNAG	2 cut(s)	103, 170
HpySE526I	ACGT	1 cut(s)	227
Hsp92I	GRCGYC	2 cut(s)	227, 266
Hsp92II	CATG	4 cut(s)	428, 466, 560, 935
HspAI	GCGC	6 cut(s)	157, 255, 266, 299, 718, 761
KasI	GGCGCC	1 cut(s)	265
Ksp22I	TGATCA	2 cut(s)	427, 454
Kzo9I	GATC	6 cut(s)	259, 293, 427, 454, 487, 712
LmnI	GCTCC	2 cut(s)	55, 880
Lsp1109I	GCAGC	2 cut(s)	32, 745
LweI	GCATC	3 cut(s)	16, 446, 680
MaeI	CTAG	3 cut(s)	128, 504, 651
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	646, 661, 880
MalI	GATC	6 cut(s)	261, 295, 429, 456, 489, 714
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	6 cut(s)	259, 293, 427, 454, 487, 712
MboII	GAAGA	2 cut(s)	540, 606
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	5 cut(s)	368, 449, 707, 769, 868
Mly113I	GGCGCC	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	75, 108
MnlI	CCTC	7 cut(s)	207, 229, 350, 912, 946, 954, 987
MspA1I	CMGCKG	2 cut(s)	23, 758
MspI	CCGG	3 cut(s)	9, 263, 564
MspR9I	CCNGG	1 cut(s)	981
MvaI	CCWGG	1 cut(s)	981
MvnI	CGCG	2 cut(s)	718, 720
MwoI	GCNNNNNNNGC	6 cut(s)	26, 163, 263, 408, 677, 764
NarI	GGCGCC	1 cut(s)	266
NdeII	GATC	6 cut(s)	259, 293, 427, 454, 487, 712
NlaIII	CATG	4 cut(s)	428, 466, 560, 935
NlaIV	GGNNCC	4 cut(s)	51, 267, 690, 802
NmeAIII	GCCGAG	1 cut(s)	849
NmuCI	GTSAC	1 cut(s)	880
NspI	RCATGY	2 cut(s)	560, 935
PaeI	GCATGC	1 cut(s)	935
PcsI	WCGNNNNNNNCGW	2 cut(s)	218, 224
PfeI	GAWTC	3 cut(s)	55, 90, 722
PfoI	TCCNGGA	1 cut(s)	979
PinAI	ACCGGT	2 cut(s)	8, 563
PkrI	GCNGC	3 cut(s)	22, 178, 760
PleI	GAGTC	2 cut(s)	74, 107
PluTI	GGCGCC	1 cut(s)	269
PpsI	GAGTC	2 cut(s)	74, 107
Psp6I	CCWGG	1 cut(s)	979
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	979
PspN4I	GGNNCC	4 cut(s)	51, 267, 690, 802
PspPI	GGNCC	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	1 cut(s)	835
RsaNI	GTAC	1 cut(s)	834
SatI	GCNGC	3 cut(s)	21, 177, 759
Sau3AI	GATC	6 cut(s)	259, 293, 427, 454, 487, 712
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	2 cut(s)	75, 108
ScrFI	CCNGG	1 cut(s)	981
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	3 cut(s)	16, 446, 680
SfcI	CTRYAG	2 cut(s)	343, 925
SfoI	GGCGCC	1 cut(s)	267
SinI	GGWCC	1 cut(s)	737
SpeI	ACTAGT	1 cut(s)	650
SphI	GCATGC	1 cut(s)	935
Sse9I	AATT	5 cut(s)	368, 449, 707, 769, 868
SsiI	CCGC	6 cut(s)	23, 176, 179, 330, 716, 735
SspDI	GGCGCC	1 cut(s)	265
SspMI	CTAG	3 cut(s)	128, 504, 651
StyD4I	CCNGG	1 cut(s)	979
TaaI	ACNGT	3 cut(s)	347, 589, 926
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	2 cut(s)	272, 490
TasI	AATT	5 cut(s)	368, 449, 707, 769, 868
TatI	WGTACW	1 cut(s)	833
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	3 cut(s)	55, 90, 722
TscAI	CASTG	3 cut(s)	111, 592, 885
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	2 cut(s)	20, 758
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	3 cut(s)	104, 394, 720
TspGWI	ACGGA	2 cut(s)	48, 248
TspRI	CASTG	3 cut(s)	111, 592, 885
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	3 cut(s)	449, 707, 868
XceI	RCATGY	2 cut(s)	560, 935
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	3 cut(s)	128, 504, 651
ZraI	GACGTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.