Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036590.1

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Reverse (-)

1748 .. 2950

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036590.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ctgtacacaatccagaaaggtaatgatactatagataagtattttcagcgtatcaaggacattactaatcaattagcttctgttggcattcatattcccgaggaagagattattatcattgctgtcaatggccttccctttgagtacctaactttcaaaattgtaatcaaagctcagattacaactatgacaatgattaaatttcgttctcttttacttgatgaggagtctactatggatcaatctatgaagactatgcagaatggaatgcctactagtaatccaattctaaatcaaggaatgcaatggaatggtgatgatattggtagtatggtgtctcctgctgtttttgttgctcaaaatggagggggaagtcacatgttctacaatggagggatgcagcaacataatttgagcattggaacaaatggttactattccaaacatcagcaacttgcttcaaactacaaagggaatgtctcacagtataatggtattggcttcttcctacagcaacctgttgttcaacatcaacaaaatggcgaaaacaagaactacagttcacaaggaggtgtatctcaattacctgacatttcaaatcaaggctttggtggcttcatttgcaaaaaacttggacatgatcactcggcatatgtgaataaatttgatcaagtcatggaggattacaagataagggatgatcgaaaggcacaagctagtgtccctgttgttgatatcagagtttctaatcctagagcttctcctccacatgcaaccggtaatccaagagaagcaaccactgttcaaacttcttctgttcccagagcttcttctacttctgcaagctataatccaagccaagtaactagtgcttctattacttctgcatcgtctgcaaaacaagaaccacagcttattaatgaatttgatccgagtgattctgtttcaggtggtccatttggttctgtttcagctgtgccacctaattcaaacaatgctgcaatggacttacttggttccctgttatctgccattgtgctgagtgcatctactactaccacatttgaaggtgatggcattgtaaattctgctccagtgactacatttatggcaactcctccagatactactatgttgaactgtaggcatgcctcttatcctctgaagctatgccaatcactgccatgcattcctcctggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0008289 GO:0012505 GO:0016020 GO:0030276 GO:0031090 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

400

Amino Acids

43.16

Weight (kDa)

5.98

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	230
AclWI	GGATC	2 cut(s)	246, 923
AcsI	RAATTY	4 cut(s)	200, 662, 923, 1084
AcuI	CTGAAG	1 cut(s)	1184
AfaI	GTAC	2 cut(s)	5, 146
AflIII	ACRYGT	1 cut(s)	378
AgeI	ACCGGT	1 cut(s)	776
AgsI	TTSAA	8 cut(s)	157, 462, 527, 597, 806, 990, 1067, 1138
AhlI	ACTAGT	2 cut(s)	275, 866
AjnI	CCWGG	1 cut(s)	1195
AluBI	AGCT	9 cut(s)	77, 173, 716, 758, 827, 846, 913, 974, 1168
AluI	AGCT	9 cut(s)	77, 173, 716, 758, 827, 846, 913, 974, 1168
Alw26I	GTCTC	2 cut(s)	342, 484
AlwI	GGATC	2 cut(s)	246, 923
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	400, 998
ApoI	RAATTY	4 cut(s)	200, 662, 923, 1084
ArsI	GACNNNNNNTTYG	2 cut(s)	462, 494
AseI	ATTAAT	1 cut(s)	918
AsiGI	ACCGGT	1 cut(s)	776
AspS9I	GGNCC	1 cut(s)	953
AsuHPI	GGTGA	2 cut(s)	326, 1082
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	953
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	412, 985
BccI	CCATC	1 cut(s)	1067
BciT130I	CCWGG	1 cut(s)	1197
BclI	TGATCA	2 cut(s)	640, 667
BcoDI	GTCTC	2 cut(s)	342, 484
BcuI	ACTAGT	2 cut(s)	275, 866
BfaI	CTAG	4 cut(s)	276, 717, 753, 867
BfmI	CTRYAG	4 cut(s)	30, 509, 556, 1141
BisI	GCNGC	2 cut(s)	401, 999
BlsI	GCNGC	2 cut(s)	402, 1000
Bme1390I	CCNGG	1 cut(s)	1197
Bme18I	GGWCC	1 cut(s)	953
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	953
BmiI	GGNNCC	1 cut(s)	1018
BmrFI	CCNGG	1 cut(s)	1197
BmsI	GCATC	3 cut(s)	387, 896, 1055
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	2 cut(s)	1077, 1104
BsaBI	GATNNNNATC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	776
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	1 cut(s)	1094
Bse3DI	GCAATG	3 cut(s)	117, 311, 1008
Bse8I	GATNNNNATC	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	1197
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	402, 703
BseJI	GATNNNNATC	1 cut(s)	113
BseMI	GCAATG	3 cut(s)	117, 311, 1008
BseMII	CTCAG	2 cut(s)	188, 1031
BseNI	ACTGG	1 cut(s)	1094
BseRI	GAGGAG	3 cut(s)	239, 753, 1107
BseXI	GCAGC	2 cut(s)	412, 985
BshFI	GGCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	776
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	777
BslFI	GGGAC	1 cut(s)	707
BsmAI	GTCTC	2 cut(s)	342, 484
BsmFI	GGGAC	1 cut(s)	707
BsmI	GAATGC	4 cut(s)	87, 273, 306, 1188
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	98
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	238, 640, 667, 700, 928
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	187, 1032
BspLI	GGNNCC	1 cut(s)	1018
BspPI	GGATC	2 cut(s)	246, 923
BsrDI	GCAATG	3 cut(s)	117, 311, 1008
BsrFI	RCCGGY	1 cut(s)	776
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	1094
BssAI	RCCGGY	1 cut(s)	776
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	5 cut(s)	238, 640, 667, 700, 928
Bst2UI	CCWGG	1 cut(s)	1197
Bst4CI	ACNGT	4 cut(s)	486, 560, 802, 1142
Bst6I	CTCTTC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	844, 1149
BstDEI	CTNAG	2 cut(s)	174, 1040
BstF5I	GGATG	2 cut(s)	402, 703
BstKTI	GATC	5 cut(s)	241, 643, 670, 703, 931
BstMAI	GTCTC	2 cut(s)	342, 484
BstMBI	GATC	5 cut(s)	238, 640, 667, 700, 928
BstMWI	GCNNNNNNNGC	3 cut(s)	612, 621, 893
BstNI	CCWGG	1 cut(s)	1197
BstNSI	RCATGY	3 cut(s)	382, 773, 1151
BstSCI	CCNGG	1 cut(s)	1195
BstSFI	CTRYAG	4 cut(s)	30, 509, 556, 1141
BstV1I	GCAGC	2 cut(s)	412, 985
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	402, 703
BtsI	GCAGTG	1 cut(s)	1178
BtsIMutI	CAGTG	3 cut(s)	798, 1101, 1178
Cac8I	GCNNGC	2 cut(s)	844, 1149
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	1 cut(s)	953
Csp6I	GTAC	2 cut(s)	4, 145
CspAI	ACCGGT	1 cut(s)	776
CviAII	CATG	6 cut(s)	379, 638, 676, 770, 1148, 1185
CviQI	GTAC	2 cut(s)	4, 145
DdeI	CTNAG	2 cut(s)	174, 1040
DpnI	GATC	5 cut(s)	240, 642, 669, 702, 930
DpnII	GATC	5 cut(s)	238, 640, 667, 700, 928
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	953
Eco57I	CTGAAG	1 cut(s)	1184
Eco88I	CYCGRG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	1195
EcoRV	GATATC	1 cut(s)	736
EcoT22I	ATGCAT	1 cut(s)	1190
FaeI	CATG	6 cut(s)	382, 641, 679, 773, 1151, 1188
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	6 cut(s)	378, 637, 675, 769, 1147, 1184
FauNDI	CATATG	1 cut(s)	652
FbaI	TGATCA	2 cut(s)	640, 667
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	401, 999
FokI	GGATG	2 cut(s)	409, 710
Fsp4HI	GCNGC	2 cut(s)	401, 999
FspBI	CTAG	4 cut(s)	276, 717, 753, 867
GluI	GCNGC	2 cut(s)	401, 999
GsuI	CTGGAG	2 cut(s)	1077, 1104
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	777
Hin1II	CATG	6 cut(s)	382, 641, 679, 773, 1151, 1188
HinfI	GANTC	2 cut(s)	227, 938
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	2 cut(s)	326, 1082
Hpy166II	GTNNAC	3 cut(s)	6, 231, 563
Hpy188I	TCNGA	4 cut(s)	177, 740, 933, 1164
Hpy188III	TCNNGA	3 cut(s)	13, 98, 1121
Hpy8I	GTNNAC	3 cut(s)	6, 231, 563
HpyAV	CCTTC	2 cut(s)	143, 1061
HpyCH4III	ACNGT	4 cut(s)	486, 560, 802, 1142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	612, 621, 893
HpyF3I	CTNAG	2 cut(s)	174, 1040
Hsp92II	CATG	6 cut(s)	382, 641, 679, 773, 1151, 1188
Ksp22I	TGATCA	2 cut(s)	640, 667
Kzo9I	GATC	5 cut(s)	238, 640, 667, 700, 928
LmnI	GCTCC	1 cut(s)	1096
Lsp1109I	GCAGC	2 cut(s)	412, 985
LweI	GCATC	3 cut(s)	387, 896, 1055
MaeI	CTAG	4 cut(s)	276, 717, 753, 867
MaeIII	GTNAC	4 cut(s)	374, 431, 862, 1096
MalI	GATC	5 cut(s)	240, 642, 669, 702, 930
MboI	GATC	5 cut(s)	238, 640, 667, 700, 928
MboII	GAAGA	5 cut(s)	116, 262, 496, 804, 822
MlyI	GAGTC	1 cut(s)	236
Mph1103I	ATGCAT	1 cut(s)	1190
MseI	TTAA	2 cut(s)	198, 918
MslI	CAYNNNNRTG	1 cut(s)	1183
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	1 cut(s)	1197
Mva1269I	GAATGC	4 cut(s)	87, 273, 306, 1188
MvaI	CCWGG	1 cut(s)	1197
MwoI	GCNNNNNNNGC	3 cut(s)	612, 621, 893
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	5 cut(s)	238, 640, 667, 700, 928
NlaIII	CATG	6 cut(s)	382, 641, 679, 773, 1151, 1188
NlaIV	GGNNCC	1 cut(s)	1018
NmeAIII	GCCGAG	1 cut(s)	626
NmuCI	GTSAC	2 cut(s)	374, 1096
NsiI	ATGCAT	1 cut(s)	1190
NspI	RCATGY	3 cut(s)	382, 773, 1151
PaeI	GCATGC	1 cut(s)	1151
PciI	ACATGT	1 cut(s)	378
PctI	GAATGC	4 cut(s)	87, 273, 306, 1188
PfeI	GAWTC	1 cut(s)	938
PfoI	TCCNGGA	1 cut(s)	1195
PinAI	ACCGGT	1 cut(s)	776
PkrI	GCNGC	2 cut(s)	402, 1000
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PscI	ACATGT	1 cut(s)	378
PshBI	ATTAAT	1 cut(s)	918
Psp6I	CCWGG	1 cut(s)	1195
PspGI	CCWGG	1 cut(s)	1195
PspN4I	GGNNCC	1 cut(s)	1018
PspPI	GGNCC	1 cut(s)	953
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	2 cut(s)	5, 146
RsaNI	GTAC	2 cut(s)	4, 145
RseI	CAYNNNNRTG	1 cut(s)	1183
SaqAI	TTAA	2 cut(s)	198, 918
SatI	GCNGC	2 cut(s)	401, 999
Sau3AI	GATC	5 cut(s)	238, 640, 667, 700, 928
Sau96I	GGNCC	1 cut(s)	953
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	1197
SfaNI	GCATC	3 cut(s)	387, 896, 1055
SfcI	CTRYAG	4 cut(s)	30, 509, 556, 1141
SinI	GGWCC	1 cut(s)	953
SmiMI	CAYNNNNRTG	1 cut(s)	1183
SpeI	ACTAGT	2 cut(s)	275, 866
SphI	GCATGC	1 cut(s)	1151
SspMI	CTAG	4 cut(s)	276, 717, 753, 867
StyD4I	CCNGG	1 cut(s)	1195
TaaI	ACNGT	4 cut(s)	486, 560, 802, 1142
TaqI	TCGA	1 cut(s)	703
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	938
Tru1I	TTAA	2 cut(s)	198, 918
Tru9I	TTAA	2 cut(s)	198, 918
TscAI	CASTG	3 cut(s)	805, 1101, 1185
TseFI	GTSAC	2 cut(s)	374, 1096
TseI	GCWGC	2 cut(s)	400, 998
Tsp45I	GTSAC	2 cut(s)	374, 1096
TspDTI	ATGAA	4 cut(s)	80, 263, 607, 936
TspRI	CASTG	3 cut(s)	805, 1101, 1185
VpaK11BI	GGWCC	1 cut(s)	953
VspI	ATTAAT	1 cut(s)	918
XapI	RAATTY	4 cut(s)	200, 662, 923, 1084
XceI	RCATGY	3 cut(s)	382, 773, 1151
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	4 cut(s)	276, 717, 753, 867
Zsp2I	ATGCAT	1 cut(s)	1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.