Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037133.1

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 443

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037133.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 442 bp

atgggggattacaagataaaggatgatcgaaaggcacaaggtagtgtccctattgttgatatcagagtttctaatcccagagcttcttctccacatgcaaccggtaatccaagagaagcaaccaatgttcaaacttctgttcccagagcttcttctactcctgcaaactataatccaagtcaagtaactagtgcttctgttacttctgcatcgtctgcaaaacaggaaccacaacttattgatgaatttgatccgcttgattctgtttcgggtggtccatttggttctgtttcagctgcgccacctaattcaaacaatgctgcaatgtacttacttggttccctgttatctgccattgtgccgagtgtatctacttctaccacatttgaaggcgatggcattgtaaattctgctccagtgactacatttatggcaactcctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0008289 GO:0012505 GO:0016020 GO:0030276 GO:0031090 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

147

Amino Acids

15.08

Weight (kDa)

4.9

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	245, 406
AfaI	GTAC	1 cut(s)	329
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	131, 312, 389
AhlI	ACTAGT	1 cut(s)	188
AluBI	AGCT	3 cut(s)	83, 149, 296
AluI	AGCT	3 cut(s)	83, 149, 296
AlwI	GGATC	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	296, 320
ApoI	RAATTY	2 cut(s)	245, 406
AsiGI	ACCGGT	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	283, 307
BccI	CCATC	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	2 cut(s)	297, 321
BlsI	GCNGC	2 cut(s)	298, 322
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	2 cut(s)	228, 340
BmsI	GCATC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	283, 307
BshTI	ACCGGT	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	25, 250
BspACI	CCGC	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	228, 340
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	416
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	2 cut(s)	25, 250
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	2 cut(s)	28, 253
BstMBI	GATC	2 cut(s)	25, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	283, 307
BtgZI	GCGATG	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	423
CfoI	GCGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	328
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	3 cut(s)	83, 149, 296
CviKI_1	RGCY	3 cut(s)	83, 149, 296
CviQI	GTAC	1 cut(s)	328
DpnI	GATC	2 cut(s)	27, 252
DpnII	GATC	2 cut(s)	25, 250
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	61
FaeI	CATG	1 cut(s)	98
FaiI	YATR	3 cut(s)	96, 171, 431
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	297, 321
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	297, 321
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	2 cut(s)	297, 321
GsuI	CTGGAG	1 cut(s)	399
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	102
Hpy188I	TCNGA	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	383
HpyCH4V	TGCA	5 cut(s)	98, 164, 209, 218, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	98
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	25, 250
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	7 cut(s)	91, 115, 157, 174, 209, 356, 429
Lsp1109I	GCAGC	2 cut(s)	283, 307
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	184, 199, 418
MalI	GATC	2 cut(s)	27, 252
MboI	GATC	2 cut(s)	25, 250
MboII	GAAGA	2 cut(s)	78, 144
MluCI	AATT	3 cut(s)	245, 307, 406
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	2 cut(s)	25, 250
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	228, 340
NmeAIII	GCCGAG	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	260
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	298, 322
PspN4I	GGNNCC	2 cut(s)	228, 340
PspPI	GGNCC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SatI	GCNGC	2 cut(s)	297, 321
Sau3AI	GATC	2 cut(s)	25, 250
Sau96I	GGNCC	1 cut(s)	275
SetI	ASST	5 cut(s)	43, 85, 151, 298, 307
SfaNI	GCATC	1 cut(s)	218
SinI	GGWCC	1 cut(s)	275
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	3 cut(s)	245, 307, 406
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	189
TaqI	TCGA	1 cut(s)	28
TasI	AATT	3 cut(s)	245, 307, 406
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	260
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	296, 320
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	245, 406
XceI	RCATGY	1 cut(s)	98
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.