Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001861.1

Orthogroup ID

OG0016442

Physical Location & Seq

Genomic Coordinates Reverse (-)

211960 .. 213852

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001861.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

atgataaacaataatggaccttttgaatcgcaacatatgtttcagagtactccagttataaatggttgtgttactatgaatcaggcaccttatgtctttcattgtacttcactcactgttggttatgtgaatccttcatatcccatgcctcagcctactatacctcagcagctagttgtcaatggtgtttcttctacatgtgggtttatggctcaatataacaatggaaatggtgcatacttacaataccccaatgctctgcacattaatggctttaatggttcatttacacagcaatttggtacaacttcagacaatggaatgacacaggcaaataatgttggaagcttttctcatagacctaagtcacaacacaatgttgtgcagtctcagaatacaagaacttttagtggcaacttcaactcaaatgcaggcaataatgagctctctccattttctgatgttgtttcttgttattgtgcatccgaaaaaccatgtgtttcagctgtcaataaatttgatcaagtcaagggggatcacaagataagggatgaccaaagggaacaagcttgtgtccctgttgttgatattagagtttcttctcccaaagcttcttctccacctgtaagctataatccaaaccaagcaaccagcactcgagttacttccgtatcgtctgcaaaaccagtaccagagccttttgttgaatttgttccatgtggttatgtttcgggtggtccgtttggttctgtttcagctgccccaactacttcaaacaatgctgagatggacttacttggttccccgttattgactattgttccaagtacatccactactaccacatctgaagttaatggccttttaagttctgctccaatgaccacatttatggaaactcctccagatactactatattgaattgtaggcaggcctcttatcctctgaagctatggcaatcactaccactcattaatcctgctctttctctctcgctcttctctgaaaccctagcgctctcctccctctcctgctctctttccacagctactgtctctccctcattgaactactgcctccgtcccctcaccggcgccatcgcctctgccggtgcttctcttccaacgccaccaagtcgttcctcagagatccgaaccccaactggtccaacctgcgtccaaggagtttatccttctcgattggtgcgacttcgagcaccaaatgccaacgacggaggaaccaaacacaaccgcaattacgacggtgcaaccagtatcaggtactcactcatacacactttgttctttgtttctgggtttgcagattcccggttcttcctgctctctctccgtctcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0008289 GO:0012505 GO:0016020 GO:0030276 GO:0031090 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

453

Amino Acids

48.48

Weight (kDa)

8.22

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170491 RchiOBHm_Chr5g0032581
rosa_multiflora	Rmu_co8201532.1_g000001 Rmu_sc0000172.1_g000014 Rmu_sc0001861.1_g000061 Rmu_sc0004465.1_g000038 Rmu_sc0006060.1_g000003 Rmu_sc0006908.1_g000022 Rmu_sc0007729.1_g000002 Rmu_sc0009395.1_g000006 Rmu_sc0036590.1_g000001 Rmu_sc0037133.1_g000001 Rmu_ssc0000417.1_g000004 Rmu_ssc0000436.1_g000006
rosa_samantha	Rh5CG142000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	1181
AccB1I	GGYRCC	2 cut(s)	85, 1094
AciI	CCGC	1 cut(s)	1252
AclWI	GGATC	2 cut(s)	543, 1144
AcsI	RAATTY	2 cut(s)	515, 707
AcuI	CTGAAG	3 cut(s)	294, 870, 968
AcyI	GRCGYC	1 cut(s)	1095
AfaI	GTAC	6 cut(s)	49, 106, 304, 690, 829, 1283
AfeI	AGCGCT	1 cut(s)	1017
AfiI	CCNNNNNNNGG	2 cut(s)	1091, 1278
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	6 cut(s)	26, 421, 707, 774, 922, 1069
Alw21I	GWGCWC	2 cut(s)	447, 1219
Alw26I	GTCTC	3 cut(s)	393, 1060, 1358
AlwI	GGATC	2 cut(s)	543, 1144
AlwNI	CAGNNNCTG	1 cut(s)	1052
Ama87I	CYCGRG	1 cut(s)	657
Aor51HI	AGCGCT	1 cut(s)	1017
AoxI	GGCC	2 cut(s)	859, 933
ApeKI	GCWGC	2 cut(s)	169, 758
ApoI	RAATTY	2 cut(s)	515, 707
AseI	ATTAAT	2 cut(s)	267, 975
Asp700I	GAANNNNTTC	2 cut(s)	349, 711
AspLEI	GCGC	2 cut(s)	1018, 1097
AspS9I	GGNCC	3 cut(s)	17, 737, 1166
AsuC2I	CCSGG	1 cut(s)	1330
AsuHPI	GGTGA	1 cut(s)	1081
AvaI	CYCGRG	1 cut(s)	657
AvaII	GGWCC	3 cut(s)	17, 737, 1166
BaeI	ACNNNNGTAYC	2 cut(s)	654, 687
BanI	GGYRCC	2 cut(s)	85, 1094
BanII	GRGCYC	1 cut(s)	447
Bbv12I	GWGCWC	2 cut(s)	447, 1219
BbvCI	CCTCAGC	2 cut(s)	150, 165
BbvI	GCAGC	2 cut(s)	181, 745
BccI	CCATC	2 cut(s)	781, 1106
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	1330
BcoDI	GTCTC	3 cut(s)	393, 1060, 1358
BfaI	CTAG	2 cut(s)	173, 1013
BfoI	RGCGCY	2 cut(s)	1019, 1098
BfuAI	ACCTGC	1 cut(s)	1181
BisI	GCNGC	2 cut(s)	170, 759
BlsI	GCNGC	2 cut(s)	171, 760
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	1330
Bme18I	GGWCC	3 cut(s)	17, 737, 1166
BmeT110I	CYCGRG	1 cut(s)	657
BmgT120I	GGNCC	3 cut(s)	17, 737, 1166
BmiI	GGNNCC	4 cut(s)	87, 802, 1096, 1240
BmrFI	CCNGG	1 cut(s)	1330
BmsI	GCATC	1 cut(s)	491
BoxI	GACNNNNGTC	1 cut(s)	364
BpmI	CTGGAG	2 cut(s)	36, 888
Bpu10I	CCTNAGC	2 cut(s)	150, 165
BpuMI	CCSGG	1 cut(s)	1330
BsaHI	GRCGYC	1 cut(s)	1095
BsaJI	CCNNGG	1 cut(s)	1180
BsaXI	ACNNNNNCTCC	2 cut(s)	1042, 1072
Bsc4I	CCNNNNNNNGG	2 cut(s)	1091, 1278
Bse118I	RCCGGY	2 cut(s)	1091, 1109
Bse1I	ACTGG	4 cut(s)	53, 686, 1168, 1272
BseDI	CCNNGG	1 cut(s)	1180
BseGI	GGATG	3 cut(s)	482, 556, 830
BseLI	CCNNNNNNNGG	2 cut(s)	1091, 1278
BseMII	CTCAG	5 cut(s)	164, 179, 404, 774, 1158
BseNI	ACTGG	4 cut(s)	53, 686, 1168, 1272
BseRI	GAGGAG	2 cut(s)	891, 1012
BseXI	GCAGC	2 cut(s)	181, 745
BsgI	GTGCAG	2 cut(s)	245, 404
BshFI	GGCC	2 cut(s)	861, 935
BshNI	GGYRCC	2 cut(s)	85, 1094
BsiHKAI	GWGCWC	2 cut(s)	447, 1219
BsiHKCI	CYCGRG	1 cut(s)	657
BsiSI	CCGG	3 cut(s)	1092, 1110, 1330
BslFI	GGGAC	2 cut(s)	560, 1068
BslI	CCNNNNNNNGG	2 cut(s)	1091, 1278
BsmAI	GTCTC	3 cut(s)	393, 1060, 1358
BsmBI	CGTCTC	1 cut(s)	1358
BsmFI	GGGAC	2 cut(s)	560, 1068
BsnI	GGCC	2 cut(s)	861, 935
BsoBI	CYCGRG	1 cut(s)	657
Bsp1286I	GDGCHC	2 cut(s)	447, 1219
Bsp143I	GATC	3 cut(s)	520, 535, 1149
BspACI	CCGC	1 cut(s)	1252
BspANI	GGCC	2 cut(s)	861, 935
BspCNI	CTCAG	5 cut(s)	163, 178, 403, 775, 1157
BspLI	GGNNCC	4 cut(s)	87, 802, 1096, 1240
BspMI	ACCTGC	1 cut(s)	1181
BspPI	GGATC	2 cut(s)	543, 1144
BspQI	GCTCTTC	1 cut(s)	1004
BspT107I	GGYRCC	2 cut(s)	85, 1094
BsrFI	RCCGGY	2 cut(s)	1091, 1109
BsrI	ACTGG	4 cut(s)	53, 686, 1168, 1272
BssAI	RCCGGY	2 cut(s)	1091, 1109
BssECI	CCNNGG	1 cut(s)	1180
BssMI	GATC	3 cut(s)	520, 535, 1149
BssNI	GRCGYC	1 cut(s)	1095
BssT1I	CCWWGG	1 cut(s)	1180
Bst4CI	ACNGT	3 cut(s)	118, 1054, 1265
Bst6I	CTCTTC	2 cut(s)	1004, 1125
BstACI	GRCGYC	1 cut(s)	1095
BstAPI	GCANNNNNTGC	1 cut(s)	1223
BstC8I	GCNNGC	2 cut(s)	433, 933
BstDEI	CTNAG	6 cut(s)	150, 165, 363, 390, 783, 1144
BstF5I	GGATG	3 cut(s)	482, 556, 830
BstH2I	RGCGCY	2 cut(s)	1019, 1098
BstHHI	GCGC	2 cut(s)	1018, 1097
BstKTI	GATC	3 cut(s)	523, 538, 1152
BstMAI	GTCTC	3 cut(s)	393, 1060, 1358
BstMBI	GATC	3 cut(s)	520, 535, 1149
BstMWI	GCNNNNNNNGC	1 cut(s)	1223
BstNSI	RCATGY	1 cut(s)	201
BstPAI	GACNNNNGTC	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	1328
BstV1I	GCAGC	2 cut(s)	181, 745
BstX2I	RGATCY	1 cut(s)	1149
BstXI	CCANNNNNNTGG	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	1149
BsuRI	GGCC	2 cut(s)	861, 935
BtgZI	GCGATG	1 cut(s)	1084
BtsCI	GGATG	3 cut(s)	482, 556, 830
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	1181
Cac8I	GCNNGC	2 cut(s)	433, 933
CaiI	CAGNNNCTG	1 cut(s)	1052
CfoI	GCGC	2 cut(s)	1018, 1097
Cfr10I	RCCGGY	2 cut(s)	1091, 1109
Cfr13I	GGNCC	3 cut(s)	17, 737, 1166
CseI	GACGC	1 cut(s)	1165
Csp6I	GTAC	6 cut(s)	48, 105, 303, 689, 828, 1282
CviAII	CATG	4 cut(s)	145, 198, 495, 717
CviQI	GTAC	6 cut(s)	48, 105, 303, 689, 828, 1282
DdeI	CTNAG	6 cut(s)	150, 165, 363, 390, 783, 1144
DinI	GGCGCC	1 cut(s)	1096
DpnI	GATC	3 cut(s)	522, 537, 1151
DpnII	GATC	3 cut(s)	520, 535, 1149
Eam1104I	CTCTTC	2 cut(s)	1004, 1125
EarI	CTCTTC	2 cut(s)	1004, 1125
Ecl136II	GAGCTC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	1180
Eco147I	AGGCCT	1 cut(s)	935
Eco24I	GRGCYC	1 cut(s)	447
Eco47I	GGWCC	3 cut(s)	17, 737, 1166
Eco47III	AGCGCT	1 cut(s)	1017
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	3 cut(s)	294, 870, 968
Eco88I	CYCGRG	1 cut(s)	657
EcoICRI	GAGCTC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	1180
EcoT38I	GRGCYC	1 cut(s)	447
EgeI	GGCGCC	1 cut(s)	1096
EheI	GGCGCC	1 cut(s)	1096
ErhI	CCWWGG	1 cut(s)	1180
Esp3I	CGTCTC	1 cut(s)	1358
FaeI	CATG	4 cut(s)	148, 201, 498, 720
FaqI	GGGAC	2 cut(s)	560, 1068
FatI	CATG	4 cut(s)	144, 197, 494, 716
FauNDI	CATATG	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	170, 759
FokI	GGATG	3 cut(s)	469, 563, 817
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	2 cut(s)	170, 759
FspBI	CTAG	2 cut(s)	173, 1013
GlaI	GCGC	2 cut(s)	1017, 1096
GluI	GCNGC	2 cut(s)	170, 759
GsuI	CTGGAG	2 cut(s)	36, 888
HaeII	RGCGCY	2 cut(s)	1019, 1098
HaeIII	GGCC	2 cut(s)	861, 935
HapII	CCGG	3 cut(s)	1092, 1110, 1330
HgaI	GACGC	1 cut(s)	1165
HhaI	GCGC	2 cut(s)	1018, 1097
Hin1I	GRCGYC	1 cut(s)	1095
Hin1II	CATG	4 cut(s)	148, 201, 498, 720
Hin6I	GCGC	2 cut(s)	1016, 1095
HinP1I	GCGC	2 cut(s)	1016, 1095
HindIII	AAGCTT	3 cut(s)	346, 567, 609
HinfI	GANTC	4 cut(s)	26, 79, 130, 1325
HpaII	CCGG	3 cut(s)	1092, 1110, 1330
HphI	GGTGA	1 cut(s)	1081
Hpy188III	TCNNGA	2 cut(s)	905, 1197
Hpy99I	CGWCG	2 cut(s)	1235, 1265
HpyAV	CCTTC	2 cut(s)	144, 1203
HpyCH4III	ACNGT	3 cut(s)	118, 1054, 1265
HpyCH4V	TGCA	8 cut(s)	236, 262, 385, 431, 482, 680, 1268, 1322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1223
HpyF3I	CTNAG	6 cut(s)	150, 165, 363, 390, 783, 1144
Hsp92I	GRCGYC	1 cut(s)	1095
Hsp92II	CATG	4 cut(s)	148, 201, 498, 720
HspAI	GCGC	2 cut(s)	1016, 1095
KasI	GGCGCC	1 cut(s)	1094
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	3 cut(s)	520, 535, 1149
LguI	GCTCTTC	1 cut(s)	1004
LmnI	GCTCC	1 cut(s)	880
Lsp1109I	GCAGC	2 cut(s)	181, 745
LweI	GCATC	1 cut(s)	491
MaeI	CTAG	2 cut(s)	173, 1013
MaeIII	GTNAC	3 cut(s)	70, 366, 661
MalI	GATC	3 cut(s)	522, 537, 1151
MboI	GATC	3 cut(s)	520, 535, 1149
MboII	GAAGA	7 cut(s)	183, 591, 606, 991, 1112, 1327, 1348
MflI	RGATCY	1 cut(s)	1149
MhlI	GDGCHC	2 cut(s)	447, 1219
MluCI	AATT	5 cut(s)	296, 515, 707, 922, 1255
Mly113I	GGCGCC	1 cut(s)	1095
MmeI	TCCRAC	3 cut(s)	322, 1148, 1193
MroXI	GAANNNNTTC	2 cut(s)	349, 711
MseI	TTAA	5 cut(s)	267, 276, 855, 866, 975
MslI	CAYNNNNRTG	2 cut(s)	267, 890
MspA1I	CMGCKG	2 cut(s)	506, 758
MspI	CCGG	3 cut(s)	1092, 1110, 1330
MspR9I	CCNGG	1 cut(s)	1330
MwoI	GCNNNNNNNGC	1 cut(s)	1223
NarI	GGCGCC	1 cut(s)	1095
NciI	CCSGG	1 cut(s)	1330
NdeI	CATATG	1 cut(s)	36
NdeII	GATC	3 cut(s)	520, 535, 1149
NlaIII	CATG	4 cut(s)	148, 201, 498, 720
NlaIV	GGNNCC	4 cut(s)	87, 802, 1096, 1240
NmuCI	GTSAC	1 cut(s)	366
NspI	RCATGY	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	657
PceI	AGGCCT	1 cut(s)	935
PciI	ACATGT	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	1004
PcsI	WCGNNNNNNNCGW	2 cut(s)	737, 1204
PdmI	GAANNNNTTC	2 cut(s)	349, 711
PfeI	GAWTC	4 cut(s)	26, 79, 130, 1325
PkrI	GCNGC	2 cut(s)	171, 760
PluTI	GGCGCC	1 cut(s)	1098
PscI	ACATGT	1 cut(s)	197
PshAI	GACNNNNGTC	1 cut(s)	364
PshBI	ATTAAT	2 cut(s)	267, 975
PsiI	TTATAA	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	447
PspN4I	GGNNCC	4 cut(s)	87, 802, 1096, 1240
PspPI	GGNCC	3 cut(s)	17, 737, 1166
PspXI	VCTCGAGB	1 cut(s)	657
PstNI	CAGNNNCTG	1 cut(s)	1052
PsuI	RGATCY	1 cut(s)	1149
PvuII	CAGCTG	2 cut(s)	506, 758
RsaI	GTAC	6 cut(s)	49, 106, 304, 690, 829, 1283
RsaNI	GTAC	6 cut(s)	48, 105, 303, 689, 828, 1282
RseI	CAYNNNNRTG	2 cut(s)	267, 890
SacI	GAGCTC	1 cut(s)	447
SapI	GCTCTTC	1 cut(s)	1004
SaqAI	TTAA	5 cut(s)	267, 276, 855, 866, 975
SatI	GCNGC	2 cut(s)	170, 759
Sau3AI	GATC	3 cut(s)	520, 535, 1149
Sau96I	GGNCC	3 cut(s)	17, 737, 1166
ScaI	AGTACT	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	1330
SduI	GDGCHC	2 cut(s)	447, 1219
SfaNI	GCATC	1 cut(s)	491
SfoI	GGCGCC	1 cut(s)	1096
Sfr274I	CTCGAG	1 cut(s)	657
SgrAI	CRCCGGYG	1 cut(s)	1091
SinI	GGWCC	3 cut(s)	17, 737, 1166
SlaI	CTCGAG	1 cut(s)	657
SmiMI	CAYNNNNRTG	2 cut(s)	267, 890
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
Sse9I	AATT	5 cut(s)	296, 515, 707, 922, 1255
SseBI	AGGCCT	1 cut(s)	935
SsiI	CCGC	1 cut(s)	1252
SspDI	GGCGCC	1 cut(s)	1094
SspMI	CTAG	2 cut(s)	173, 1013
SstI	GAGCTC	1 cut(s)	447
StuI	AGGCCT	1 cut(s)	935
StyD4I	CCNGG	1 cut(s)	1328
StyI	CCWWGG	1 cut(s)	1180
TaaI	ACNGT	3 cut(s)	118, 1054, 1265
TaqI	TCGA	3 cut(s)	658, 1198, 1213
TasI	AATT	5 cut(s)	296, 515, 707, 922, 1255
TatI	WGTACW	3 cut(s)	47, 104, 827
TfiI	GAWTC	4 cut(s)	26, 79, 130, 1325
Tru1I	TTAA	5 cut(s)	267, 276, 855, 866, 975
Tru9I	TTAA	5 cut(s)	267, 276, 855, 866, 975
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	2 cut(s)	169, 758
Tsp45I	GTSAC	1 cut(s)	366
TspDTI	ATGAA	4 cut(s)	89, 92, 126, 273
TspGWI	ACGGA	5 cut(s)	658, 729, 1070, 1248, 1340
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	3 cut(s)	17, 737, 1166
VspI	ATTAAT	2 cut(s)	267, 975
XapI	RAATTY	2 cut(s)	515, 707
XceI	RCATGY	1 cut(s)	201
XhoI	CTCGAG	1 cut(s)	657
XmnI	GAANNNNTTC	2 cut(s)	349, 711
XspI	CTAG	2 cut(s)	173, 1013
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.