Protein ROOT HAIR DEFECTIVE 3 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0054821 RchiOBHm_Chr5g0054951 RchiOBHm_Chr5g0061411 RchiOBHm_Chr5g0082371 RchiOBHm_Chr7g0192241 |
| rosa_roxburghii | Rroxscaffold_1G00025860 Rroxscaffold_1G00026060 Rroxscaffold_1G00026160 |
| rosa_rugosa | Rorug03G0357000 Rorug03G0357100 Rorug05G0288000 |
| rosa_samantha | Rh3BG343700 Rh4CG064300 Rh5AG359300 Rh5BG366800 Rh5BG370200 Rh5BG414800 Rh5CG392700 Rh5CG439500 Rh5DG383800 Rh5DG429200 Rh5DG520300 Rh6BG403900 Rh7CG516000 Rh7DG262600 |
| rosa_wichuraiana | Rw7G042170 Rw7G042190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 1 cut(s) | 67 |
| AluBI | AGCT | 2 cut(s) | 88, 122 |
| AluI | AGCT | 2 cut(s) | 88, 122 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 207 |
| AoxI | GGCC | 1 cut(s) | 18 |
| AspLEI | GCGC | 1 cut(s) | 117 |
| AsuHPI | GGTGA | 2 cut(s) | 182, 253 |
| BccI | CCATC | 3 cut(s) | 29, 153, 161 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BmrI | ACTGGG | 1 cut(s) | 190 |
| BmuI | ACTGGG | 1 cut(s) | 190 |
| BpuEI | CTTGAG | 1 cut(s) | 34 |
| Bse1I | ACTGG | 1 cut(s) | 185 |
| BseGI | GGATG | 2 cut(s) | 88, 164 |
| BseNI | ACTGG | 1 cut(s) | 185 |
| BshFI | GGCC | 1 cut(s) | 20 |
| BsmI | GAATGC | 1 cut(s) | 179 |
| BsnI | GGCC | 1 cut(s) | 20 |
| BspANI | GGCC | 1 cut(s) | 20 |
| BsrI | ACTGG | 1 cut(s) | 185 |
| BstF5I | GGATG | 2 cut(s) | 88, 164 |
| BstHHI | GCGC | 1 cut(s) | 117 |
| BsuRI | GGCC | 1 cut(s) | 20 |
| BtsCI | GGATG | 2 cut(s) | 88, 164 |
| BtsI | GCAGTG | 1 cut(s) | 106 |
| BtsIMutI | CAGTG | 1 cut(s) | 106 |
| CaiI | CAGNNNCTG | 1 cut(s) | 207 |
| CfoI | GCGC | 1 cut(s) | 117 |
| CviAII | CATG | 2 cut(s) | 13, 130 |
| CviJI | RGCY | 4 cut(s) | 20, 88, 122, 163 |
| CviKI_1 | RGCY | 4 cut(s) | 20, 88, 122, 163 |
| DraI | TTTAAA | 1 cut(s) | 196 |
| FaeI | CATG | 2 cut(s) | 16, 133 |
| FaiI | YATR | 6 cut(s) | 9, 14, 91, 131, 150, 228 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 147, 179 |
| FatI | CATG | 2 cut(s) | 12, 129 |
| FokI | GGATG | 2 cut(s) | 95, 171 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GlaI | GCGC | 1 cut(s) | 116 |
| HaeIII | GGCC | 1 cut(s) | 20 |
| HhaI | GCGC | 1 cut(s) | 117 |
| Hin1II | CATG | 2 cut(s) | 16, 133 |
| Hin6I | GCGC | 1 cut(s) | 115 |
| HinP1I | GCGC | 1 cut(s) | 115 |
| HinfI | GANTC | 1 cut(s) | 204 |
| HphI | GGTGA | 2 cut(s) | 182, 253 |
| Hpy188III | TCNNGA | 1 cut(s) | 51 |
| HpyAV | CCTTC | 2 cut(s) | 29, 149 |
| HpyCH4V | TGCA | 1 cut(s) | 235 |
| Hsp92II | CATG | 2 cut(s) | 16, 133 |
| HspAI | GCGC | 1 cut(s) | 115 |
| LpnPI | CCDG | 1 cut(s) | 166 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MfeI | CAATTG | 1 cut(s) | 62 |
| MluCI | AATT | 2 cut(s) | 62, 143 |
| MnlI | CCTC | 2 cut(s) | 10, 237 |
| MseI | TTAA | 2 cut(s) | 186, 195 |
| MunI | CAATTG | 1 cut(s) | 62 |
| Mva1269I | GAATGC | 1 cut(s) | 179 |
| NlaIII | CATG | 2 cut(s) | 16, 133 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PctI | GAATGC | 1 cut(s) | 179 |
| PfeI | GAWTC | 1 cut(s) | 204 |
| PstNI | CAGNNNCTG | 1 cut(s) | 207 |
| SaqAI | TTAA | 2 cut(s) | 186, 195 |
| SetI | ASST | 4 cut(s) | 40, 90, 124, 248 |
| SgeI | CNNG | 8 cut(s) | 25, 63, 84, 138, 142, 176, 193, 244 |
| SmlI | CTYRAG | 1 cut(s) | 49 |
| SmoI | CTYRAG | 1 cut(s) | 49 |
| Sse9I | AATT | 2 cut(s) | 62, 143 |
| SspMI | CTAG | 1 cut(s) | 126 |
| TaqI | TCGA | 1 cut(s) | 252 |
| TasI | AATT | 2 cut(s) | 62, 143 |
| TfiI | GAWTC | 1 cut(s) | 204 |
| Tru1I | TTAA | 2 cut(s) | 186, 195 |
| Tru9I | TTAA | 2 cut(s) | 186, 195 |
| TscAI | CASTG | 1 cut(s) | 106 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 1 cut(s) | 48 |
| TspRI | CASTG | 1 cut(s) | 106 |
| XspI | CTAG | 1 cut(s) | 126 |