Rh6BG403900

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006428
Physical Location & Seq
Reverse (-)
63060494 .. 63067521
7028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG403900.1

Sequence Viewer

Length: 624 bp
ATGGTGCTTATTGAGAGTATAACCAAAACGATCGAGGATGTTCGGGAAGCCTCTGTTTTCACCGACTTCAACTATTCTTCTGTTTCGAATTTTCCATCAAGATCGACAGTGATGAAATCAATTGTTCCATCTCCTTCAGGCTTCTCGCTCATTTTCCTCAAAAGCCTGAGAGGGTTGGAAGATAACGCAGAAGACAACCGCCTCTACGCTCGGAACCCAATCGACATCGCTTCTCTTCGTCCCTCCCAACTCGAAGAGTTCGTCAAAGGTACTCCAACCCAACCCGCCCTCTCTCACTTTTCTGCTTTTGTTGTCTGGAGGGGCGATTTCTGGGGGTACGGGTTTGCATCCCGGATCTGTTCGGCTCCTTCTGGATCCAAGCTTGGCTGTCTTTTGATCGGTGCATGGTGGTGGACGGCTGGCTTTTCACTAAACTTGTGGGAAGGGCAGCAATGGGTGGTTTTCTGTTCGGGTCGTGGTCACTTGGTCCGCTCATCCGGCGTGAAGACGGTGGCTGGGCGGCAGTGGTACGGCAGTGGGTGGAGGGTCAACAAACCGGGTTGGATTGCACTGGATCTACTGCTCGTTGGGCTTGGCTTTTGGGTCTCTGCTTCGACTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cnd1 Cnd1_N Cohesin_HEAT

Protein Analysis

207

Amino Acids

22.89

Weight (kDa)

9.12

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 492
AciI CCGC 4 cut(s) 199, 285, 490, 520
AclWI GGATC 4 cut(s) 362, 369, 382, 582
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 3 cut(s) 271, 338, 530
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 1 cut(s) 382
AluI AGCT 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 610
AlwI GGATC 4 cut(s) 362, 369, 382, 582
ApeKI GCWGC 1 cut(s) 448
ApoI RAATTY 1 cut(s) 88
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
AspS9I GGNCC 1 cut(s) 487
AsuC2I CCSGG 2 cut(s) 352, 558
AsuHPI GGTGA 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 487
BaeI ACNNNNGTAYC 2 cut(s) 520, 553
BamHI GGATCC 1 cut(s) 374
BbsI GAAGAC 2 cut(s) 198, 512
BbvI GCAGC 1 cut(s) 460
BccI CCATC 2 cut(s) 103, 136
BceAI ACGGC 2 cut(s) 432, 547
BcnI CCSGG 2 cut(s) 352, 558
BcoDI GTCTC 1 cut(s) 610
BisI GCNGC 2 cut(s) 449, 521
BlsI GCNGC 2 cut(s) 450, 522
Bme1390I CCNGG 2 cut(s) 352, 558
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 3 cut(s) 215, 366, 376
BmrFI CCNGG 2 cut(s) 352, 558
BmsI GCATC 1 cut(s) 356
BpiI GAAGAC 2 cut(s) 198, 512
BpmI CTGGAG 1 cut(s) 337
Bpu14I TTCGAA 1 cut(s) 86
BpuMI CCSGG 2 cut(s) 352, 558
BsaI GGTCTC 1 cut(s) 610
Bse1I ACTGG 1 cut(s) 576
Bse3DI GCAATG 1 cut(s) 458
BseGI GGATG 3 cut(s) 43, 347, 494
BseMI GCAATG 1 cut(s) 458
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 576
BseXI GCAGC 1 cut(s) 460
BseYI CCCAGC 1 cut(s) 515
Bsh1285I CGRYCG 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 33
BsiSI CCGG 3 cut(s) 352, 498, 557
BslFI GGGAC 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 225
Bso31I GGTCTC 1 cut(s) 610
Bsp119I TTCGAA 1 cut(s) 86
Bsp143I GATC 6 cut(s) 30, 101, 354, 374, 396, 574
BspACI CCGC 4 cut(s) 199, 285, 490, 520
BspCNI CTCAG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 620
BspLI GGNNCC 3 cut(s) 215, 366, 376
BspPI GGATC 4 cut(s) 362, 369, 382, 582
BspT104I TTCGAA 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 610
BsrBI CCGCTC 1 cut(s) 492
BsrDI GCAATG 1 cut(s) 458
BsrI ACTGG 1 cut(s) 576
BssMI GATC 6 cut(s) 30, 101, 354, 374, 396, 574
Bst4CI ACNGT 2 cut(s) 109, 511
Bst6I CTCTTC 2 cut(s) 240, 249
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 3 cut(s) 43, 347, 494
BstKTI GATC 6 cut(s) 33, 104, 357, 377, 399, 577
BstMAI GTCTC 1 cut(s) 610
BstMBI GATC 6 cut(s) 30, 101, 354, 374, 396, 574
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 498, 589
BstSCI CCNGG 2 cut(s) 350, 556
BstV1I GCAGC 1 cut(s) 460
BstV2I GAAGAC 2 cut(s) 198, 512
BstX2I RGATCY 3 cut(s) 354, 374, 574
BstYI RGATCY 3 cut(s) 354, 374, 574
BtgZI GCGATG 1 cut(s) 211
BtsCI GGATG 3 cut(s) 43, 347, 494
BtsI GCAGTG 2 cut(s) 530, 541
BtsIMutI CAGTG 4 cut(s) 114, 530, 541, 569
Cac8I GCNNGC 1 cut(s) 421
CciI TCATGA 1 cut(s) 620
Cfr13I GGNCC 1 cut(s) 487
Csp6I GTAC 3 cut(s) 270, 337, 529
CviAII CATG 2 cut(s) 405, 621
CviQI GTAC 3 cut(s) 270, 337, 529
DdeI CTNAG 1 cut(s) 167
DpnI GATC 6 cut(s) 32, 103, 356, 376, 398, 576
DpnII GATC 6 cut(s) 30, 101, 354, 374, 396, 574
Eam1104I CTCTTC 2 cut(s) 240, 249
EarI CTCTTC 2 cut(s) 240, 249
Eco31I GGTCTC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 120
FaeI CATG 2 cut(s) 408, 624
FaiI YATR 3 cut(s) 20, 406, 622
FaqI GGGAC 1 cut(s) 225
FatI CATG 2 cut(s) 404, 620
FauI CCCGC 1 cut(s) 292
Fnu4HI GCNGC 2 cut(s) 449, 521
FokI GGATG 3 cut(s) 50, 334, 481
Fsp4HI GCNGC 2 cut(s) 449, 521
GluI GCNGC 2 cut(s) 449, 521
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 337
HapII CCGG 3 cut(s) 352, 498, 557
Hin1II CATG 2 cut(s) 408, 624
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 380
HpaII CCGG 3 cut(s) 352, 498, 557
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 414, 550
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 5 cut(s) 44, 99, 316, 372, 621
Hpy8I GTNNAC 2 cut(s) 414, 550
HpyAV CCTTC 3 cut(s) 144, 378, 437
HpyCH4III ACNGT 2 cut(s) 109, 511
HpyCH4V TGCA 3 cut(s) 347, 404, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 498, 589
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 2 cut(s) 408, 624
Kzo9I GATC 6 cut(s) 30, 101, 354, 374, 396, 574
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 1 cut(s) 460
LweI GCATC 1 cut(s) 356
MaeIII GTNAC 1 cut(s) 479
MalI GATC 6 cut(s) 32, 103, 356, 376, 398, 576
MbiI CCGCTC 1 cut(s) 492
MboI GATC 6 cut(s) 30, 101, 354, 374, 396, 574
MboII GAAGA 6 cut(s) 69, 191, 203, 227, 266, 517
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 3 cut(s) 354, 374, 574
MluCI AATT 2 cut(s) 88, 120
MmeI TCCRAC 3 cut(s) 156, 299, 542
MnlI CCTC 9 cut(s) 28, 61, 164, 167, 212, 253, 299, 312, 537
MslI CAYNNNNRTG 1 cut(s) 409
MspI CCGG 3 cut(s) 352, 498, 557
MspR9I CCNGG 2 cut(s) 352, 558
MunI CAATTG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 498, 589
NciI CCSGG 2 cut(s) 352, 558
NdeII GATC 6 cut(s) 30, 101, 354, 374, 396, 574
NlaIII CATG 2 cut(s) 408, 624
NlaIV GGNNCC 3 cut(s) 215, 366, 376
NmuCI GTSAC 1 cut(s) 479
NspV TTCGAA 1 cut(s) 86
PagI TCATGA 1 cut(s) 620
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfoI TCCNGGA 1 cut(s) 350
PkrI GCNGC 2 cut(s) 450, 522
Ple19I CGATCG 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 515
PspN4I GGNNCC 3 cut(s) 215, 366, 376
PspPI GGNCC 1 cut(s) 487
PsuI RGATCY 3 cut(s) 354, 374, 574
PvuI CGATCG 1 cut(s) 33
RsaI GTAC 3 cut(s) 271, 338, 530
RsaNI GTAC 3 cut(s) 270, 337, 529
RseI CAYNNNNRTG 1 cut(s) 409
SatI GCNGC 2 cut(s) 449, 521
Sau3AI GATC 6 cut(s) 30, 101, 354, 374, 396, 574
Sau96I GGNCC 1 cut(s) 487
ScrFI CCNGG 2 cut(s) 352, 558
SetI ASST 2 cut(s) 271, 384
SfaNI GCATC 1 cut(s) 356
SfuI TTCGAA 1 cut(s) 86
SinI GGWCC 1 cut(s) 487
SmiMI CAYNNNNRTG 1 cut(s) 409
Sse9I AATT 2 cut(s) 88, 120
SsiI CCGC 4 cut(s) 199, 285, 490, 520
StyD4I CCNGG 2 cut(s) 350, 556
TaaI ACNGT 2 cut(s) 109, 511
TaqI TCGA 6 cut(s) 33, 86, 104, 222, 252, 614
TasI AATT 2 cut(s) 88, 120
TauI GCSGC 1 cut(s) 523
TscAI CASTG 4 cut(s) 114, 530, 541, 576
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 2 cut(s) 128, 609
TspRI CASTG 4 cut(s) 114, 530, 541, 576
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.