Rh5CG439500

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006428
Physical Location & Seq
Reverse (-)
60951959 .. 60966267
14309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG439500.1

Sequence Viewer

Length: 954 bp
ATGTTTATCAAAACGATTGCAACAAGCATGAATGCTGAGATTACCTACAAGCACAAGCATATACAGAGTATAGTTGGAATTCTAACAGCACTCTTGAAGAGTAATGCCAAGGCGCGGCGAGATAGAGACAAAGCTGTTTCTGGTCCTGGGATAACAGATATTCGTTTTGCTCAGGGTGACATGGTACAGAAGCTGATATATCAGATATACAAGAACCCTCATCCAAATATTGTTGTTTTAACAGTTGGAGCAGGTGATATAACAATTGTAGGCTCAAAGCTGCCCAAACTGGAGATAGAAAATATGTTTGGGGGGAAACAAAAGATGAGGAAAGATGATGACTACAGTTGGAATCACCGGGTAGAAAGTTACAAGTTCATTTGGTTGCAAATGAATATGAGGTATAAGCATAGAAAGCCAAATTCATCAAATGGTAGAACAAAGATCAGGCAATTGGGTTATGGAGTGGGAGGTGGAAGACGGTCAAAATCAGATTGGAGCAAGATCGACAGTGATGAAATCAATTGTTCCATGCCTTCAGGCTTCTCGCTCCTTCTCCTCAAAAGCCTGAGAGGGTTGGAAGATAACGCAGAAGACAACCGCCTCTACGCTCGGAACCCAATCGACATCGCTTCTCTTCGTCCCTCCCAACTCGAAGAGTTCGTCAAAGATCCTTACCAACTCAACAGAACCTTTAGGAGTAATGGTCTCTTGAAGTCTCGAGGAGTGTTCCCAGAAGCACCTCTTGGTAAGCCTCATGCAGTACTTTCCAAAGAGGCCTTGGCAAAGAAACAAGCCACCGAAACTGGTGAGGTCTTTGAATTATTGTCAACAGGAAAGAGCTATATTGGTGCAGCTAATGAAAGAATAGATACTGTATATGCTGTTGACATGCCACAGTTGATCTTCTGCGCTTATTCACTATCAATCCTATGCTGTTACGATCTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cnd1 Cnd1_N Cohesin_HEAT

Protein Analysis

317

Amino Acids

35.71

Weight (kDa)

9.52

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 242
Acc36I ACCTGC 1 cut(s) 242
AccII CGCG 1 cut(s) 115
AciI CCGC 2 cut(s) 115, 601
AclWI GGATC 1 cut(s) 665
AcsI RAATTY 2 cut(s) 78, 421
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 2 cut(s) 186, 765
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 3 cut(s) 97, 715, 821
AjnI CCWGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 4 cut(s) 291, 323, 729, 761
AluBI AGCT 5 cut(s) 134, 193, 280, 843, 857
AluI AGCT 5 cut(s) 134, 193, 280, 843, 857
Alw26I GTCTC 3 cut(s) 120, 713, 723
AlwI GGATC 1 cut(s) 665
AlwNI CAGNNNCTG 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 720
AoxI GGCC 1 cut(s) 777
ApeKI GCWGC 2 cut(s) 280, 854
ApoI RAATTY 2 cut(s) 78, 421
ArsI GACNNNNNNTTYG 2 cut(s) 648, 680
AspLEI GCGC 2 cut(s) 115, 914
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 4 cut(s) 188, 266, 347, 821
AvaI CYCGRG 1 cut(s) 720
AvaII GGWCC 1 cut(s) 143
BbsI GAAGAC 2 cut(s) 484, 600
BbvI GCAGC 2 cut(s) 267, 866
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 3 cut(s) 120, 713, 723
BfmI CTRYAG 2 cut(s) 343, 947
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 3 cut(s) 116, 281, 855
BlsI GCNGC 3 cut(s) 117, 282, 856
BmcAI AGTACT 1 cut(s) 765
Bme1390I CCNGG 2 cut(s) 147, 359
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 720
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 617
BmrFI CCNGG 2 cut(s) 147, 359
BpiI GAAGAC 2 cut(s) 484, 600
BpmI CTGGAG 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 3 cut(s) 108, 146, 780
BsaXI ACNNNNNCTCC 2 cut(s) 691, 721
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 294, 811
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 108, 146, 780
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 3 cut(s) 27, 185, 560
BseNI ACTGG 2 cut(s) 294, 811
BseRI GAGGAG 2 cut(s) 548, 738
BseXI GCAGC 2 cut(s) 267, 866
BsgI GTGCAG 1 cut(s) 873
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 779
BsiHKCI CYCGRG 1 cut(s) 720
BsiSI CCGG 1 cut(s) 358
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 3 cut(s) 120, 713, 723
BsmFI GGGAC 1 cut(s) 627
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 1 cut(s) 779
Bso31I GGTCTC 1 cut(s) 713
BsoBI CYCGRG 1 cut(s) 720
Bsp143I GATC 5 cut(s) 444, 504, 670, 903, 943
BspACI CCGC 2 cut(s) 115, 601
BspANI GGCC 1 cut(s) 779
BspCNI CTCAG 3 cut(s) 28, 184, 561
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 617
BspMAI CTGCAG 1 cut(s) 951
BspMI ACCTGC 1 cut(s) 242
BspPI GGATC 1 cut(s) 665
BspTNI GGTCTC 1 cut(s) 713
BsrI ACTGG 2 cut(s) 294, 811
BssECI CCNNGG 3 cut(s) 108, 146, 780
BssMI GATC 5 cut(s) 444, 504, 670, 903, 943
BssT1I CCWWGG 2 cut(s) 108, 780
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 6 cut(s) 244, 347, 483, 512, 877, 900
Bst6I CTCTTC 3 cut(s) 92, 642, 651
BstDEI CTNAG 3 cut(s) 36, 171, 569
BstF5I GGATG 1 cut(s) 220
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 2 cut(s) 115, 914
BstKTI GATC 5 cut(s) 447, 507, 673, 906, 946
BstMAI GTCTC 3 cut(s) 120, 713, 723
BstMBI GATC 5 cut(s) 444, 504, 670, 903, 943
BstMWI GCNNNNNNNGC 1 cut(s) 415
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 2 cut(s) 145, 357
BstSFI CTRYAG 2 cut(s) 343, 947
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 267, 866
BstV2I GAAGAC 2 cut(s) 484, 600
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BsuRI GGCC 1 cut(s) 779
BtgZI GCGATG 1 cut(s) 613
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 517
BveI ACCTGC 1 cut(s) 242
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 2 cut(s) 115, 914
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 185, 764
CviAII CATG 5 cut(s) 28, 181, 532, 758, 892
CviQI GTAC 2 cut(s) 185, 764
DdeI CTNAG 3 cut(s) 36, 171, 569
DpnI GATC 5 cut(s) 446, 506, 672, 905, 945
DpnII GATC 5 cut(s) 444, 504, 670, 903, 943
Eam1104I CTCTTC 3 cut(s) 92, 642, 651
EarI CTCTTC 3 cut(s) 92, 642, 651
Eco130I CCWWGG 2 cut(s) 108, 780
Eco147I AGGCCT 1 cut(s) 779
Eco31I GGTCTC 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 720
EcoRI GAATTC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 108, 780
ErhI CCWWGG 2 cut(s) 108, 780
FaeI CATG 5 cut(s) 31, 184, 535, 761, 895
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 1 cut(s) 627
FatI CATG 5 cut(s) 27, 180, 531, 757, 891
Fnu4HI GCNGC 3 cut(s) 116, 281, 855
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 3 cut(s) 116, 281, 855
GlaI GCGC 2 cut(s) 114, 913
GluI GCNGC 3 cut(s) 116, 281, 855
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 1 cut(s) 779
HapII CCGG 1 cut(s) 358
HhaI GCGC 2 cut(s) 115, 914
Hin1II CATG 5 cut(s) 31, 184, 535, 761, 895
Hin6I GCGC 2 cut(s) 113, 912
HinP1I GCGC 2 cut(s) 113, 912
HincII GTYRAC 2 cut(s) 831, 889
HindII GTYRAC 2 cut(s) 831, 889
HinfI GANTC 1 cut(s) 352
HpaII CCGG 1 cut(s) 358
HphI GGTGA 4 cut(s) 188, 266, 347, 821
Hpy166II GTNNAC 2 cut(s) 831, 889
Hpy188I TCNGA 3 cut(s) 204, 493, 615
Hpy188III TCNNGA 3 cut(s) 94, 712, 720
Hpy8I GTNNAC 2 cut(s) 831, 889
HpyAV CCTTC 2 cut(s) 546, 563
HpyCH4III ACNGT 6 cut(s) 244, 347, 483, 512, 877, 900
HpyCH4V TGCA 5 cut(s) 20, 388, 761, 854, 949
HpyF10VI GCNNNNNNNGC 1 cut(s) 415
HpyF3I CTNAG 3 cut(s) 36, 171, 569
Hsp92II CATG 5 cut(s) 31, 184, 535, 761, 895
HspAI GCGC 2 cut(s) 113, 912
Kzo9I GATC 5 cut(s) 444, 504, 670, 903, 943
LmnI GCTCC 3 cut(s) 248, 498, 555
Lsp1109I GCAGC 2 cut(s) 267, 866
MaeIII GTNAC 3 cut(s) 176, 368, 938
MalI GATC 5 cut(s) 446, 506, 672, 905, 945
MboI GATC 5 cut(s) 444, 504, 670, 903, 943
MboII GAAGA 7 cut(s) 109, 489, 593, 605, 629, 668, 898
MfeI CAATTG 3 cut(s) 264, 452, 523
MflI RGATCY 1 cut(s) 670
MluCI AATT 6 cut(s) 78, 264, 421, 452, 523, 821
MmeI TCCRAC 4 cut(s) 55, 226, 329, 558
MseI TTAA 1 cut(s) 239
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 2 cut(s) 147, 359
MunI CAATTG 3 cut(s) 264, 452, 523
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 415
NciI CCSGG 1 cut(s) 359
NdeII GATC 5 cut(s) 444, 504, 670, 903, 943
NlaIII CATG 5 cut(s) 31, 184, 535, 761, 895
NlaIV GGNNCC 1 cut(s) 617
NmuCI GTSAC 1 cut(s) 176
NspI RCATGY 1 cut(s) 895
PaeR7I CTCGAG 1 cut(s) 720
PaqCI CACCTGC 1 cut(s) 242
PceI AGGCCT 1 cut(s) 779
PcsI WCGNNNNNNNCGW 1 cut(s) 660
PctI GAATGC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 3 cut(s) 117, 282, 856
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 617
PspPI GGNCC 1 cut(s) 143
PstI CTGCAG 1 cut(s) 951
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 2 cut(s) 186, 765
RsaNI GTAC 2 cut(s) 185, 764
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 3 cut(s) 116, 281, 855
Sau3AI GATC 5 cut(s) 444, 504, 670, 903, 943
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 1 cut(s) 765
ScrFI CCNGG 2 cut(s) 147, 359
SfcI CTRYAG 2 cut(s) 343, 947
Sfr274I CTCGAG 1 cut(s) 720
SinI GGWCC 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 720
SmoI CTYRAG 1 cut(s) 720
Sse9I AATT 6 cut(s) 78, 264, 421, 452, 523, 821
SseBI AGGCCT 1 cut(s) 779
SsiI CCGC 2 cut(s) 115, 601
SspI AATATT 1 cut(s) 229
StuI AGGCCT 1 cut(s) 779
StyD4I CCNGG 2 cut(s) 145, 357
StyI CCWWGG 2 cut(s) 108, 780
TaaI ACNGT 6 cut(s) 244, 347, 483, 512, 877, 900
TaqI TCGA 4 cut(s) 507, 624, 654, 721
TasI AATT 6 cut(s) 78, 264, 421, 452, 523, 821
TatI WGTACW 1 cut(s) 763
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 2 cut(s) 280, 854
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 6 cut(s) 44, 367, 407, 414, 531, 876
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 2 cut(s) 78, 421
XceI RCATGY 1 cut(s) 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 778
XhoI CTCGAG 1 cut(s) 720
ZrmI AGTACT 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.