Rw7G042170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006428
Physical Location & Seq
Reverse (-)
65847991 .. 65853537
5547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G042170.1

Sequence Viewer

Length: 357 bp
ATGAAACTAAATGTGAAGATAGTTTATGCTCAAGCTCAGAAATCATTGATGTTGAACAGCAGCAGAGGAGCAATAGTGACAGCTTTTTCGATATTGTGGAGCTCCTATAGATTGGGACCAGATGCAGAGAGGCTGATTTATCATTTGCGGATGGAGCATGACCAAACGTTTCACAGTTTACCAAAAGAGCAGCGCAGAGTTCTTGGAGCTGCTTACCAGAATGAGGCCTATAATGTTTTTGGGATTGCCGGAGTAGTAGGATATAAAGTAGCCGTAAATGTATTGGAAGATTCAAAGAAACAAGTAAATGGAAGGCAGGACAGGGCTTTCTCTGGAATACTTCCATTTCATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.32

Weight (kDa)

9.79

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 148
AclI AACGTT 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 2 cut(s) 55, 294
AluBI AGCT 4 cut(s) 35, 83, 102, 209
AluI AGCT 4 cut(s) 35, 83, 102, 209
Alw21I GWGCWC 1 cut(s) 104
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 3 cut(s) 60, 190, 209
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 72, 196, 202
BccI CCATC 1 cut(s) 145
BceAI ACGGC 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 106
BisI GCNGC 3 cut(s) 61, 191, 210
BlsI GCNGC 3 cut(s) 62, 192, 211
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 3 cut(s) 72, 196, 202
BshFI GGCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 104
BspACI CCGC 1 cut(s) 148
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 106
BstV1I GCAGC 3 cut(s) 72, 196, 202
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 156
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 2 cut(s) 158, 350
CviJI RGCY 8 cut(s) 35, 83, 102, 133, 209, 227, 272, 326
CviKI_1 RGCY 8 cut(s) 35, 83, 102, 133, 209, 227, 272, 326
DdeI CTNAG 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 104
FaeI CATG 2 cut(s) 161, 353
FaiI YATR 7 cut(s) 27, 108, 159, 231, 264, 351, 355
FaqI GGGAC 1 cut(s) 129
FatI CATG 2 cut(s) 157, 349
Fnu4HI GCNGC 3 cut(s) 61, 191, 210
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 3 cut(s) 61, 191, 210
GlaI GCGC 1 cut(s) 194
GluI GCNGC 3 cut(s) 61, 191, 210
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 195
Hin1II CATG 2 cut(s) 161, 353
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 333
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 306
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 2 cut(s) 161, 353
HspAI GCGC 1 cut(s) 193
LmnI GCTCC 5 cut(s) 68, 99, 107, 154, 206
LpnPI CCDG 6 cut(s) 132, 230, 262, 302, 307, 318
Lsp1109I GCAGC 3 cut(s) 72, 196, 202
LweI GCATC 1 cut(s) 112
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 76
MboII GAAGA 2 cut(s) 28, 299
MhlI GDGCHC 1 cut(s) 104
MnlI CCTC 3 cut(s) 59, 123, 217
MspI CCGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 154
NlaIII CATG 2 cut(s) 161, 353
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 76
PceI AGGCCT 1 cut(s) 227
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 3 cut(s) 62, 192, 211
Psp124BI GAGCTC 1 cut(s) 104
Psp1406I AACGTT 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 116
SacI GAGCTC 1 cut(s) 104
SatI GCNGC 3 cut(s) 61, 191, 210
Sau96I GGNCC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 104
SetI ASST 5 cut(s) 37, 85, 104, 170, 211
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SseBI AGGCCT 1 cut(s) 227
SsiI CCGC 1 cut(s) 148
SstI GAGCTC 1 cut(s) 104
StuI AGGCCT 1 cut(s) 227
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 89
TfiI GAWTC 1 cut(s) 290
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 3 cut(s) 60, 190, 209
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 17, 338
VpaK11BI GGWCC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.