Mur ligase family, catalytic domain
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0054821 RchiOBHm_Chr5g0054951 RchiOBHm_Chr5g0061411 RchiOBHm_Chr5g0082371 RchiOBHm_Chr7g0192241 |
| rosa_roxburghii | Rroxscaffold_1G00025860 Rroxscaffold_1G00026060 Rroxscaffold_1G00026160 |
| rosa_rugosa | Rorug03G0357000 Rorug03G0357100 Rorug05G0288000 |
| rosa_samantha | Rh3BG343700 Rh4CG064300 Rh5AG359300 Rh5BG366800 Rh5BG370200 Rh5BG414800 Rh5CG392700 Rh5CG439500 Rh5DG383800 Rh5DG429200 Rh5DG520300 Rh6BG403900 Rh7CG516000 Rh7DG262600 |
| rosa_wichuraiana | Rw7G042170 Rw7G042190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 62 |
| Acc36I | ACCTGC | 1 cut(s) | 62 |
| AfaI | GTAC | 1 cut(s) | 6 |
| AjnI | CCWGG | 1 cut(s) | 323 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 191, 223 |
| AluBI | AGCT | 3 cut(s) | 13, 100, 362 |
| AluI | AGCT | 3 cut(s) | 13, 100, 362 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 13 |
| ApeKI | GCWGC | 1 cut(s) | 100 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 133, 165 |
| AsuC2I | CCSGG | 1 cut(s) | 272 |
| AsuHPI | GGTGA | 2 cut(s) | 86, 260 |
| BbvI | GCAGC | 1 cut(s) | 87 |
| BccI | CCATC | 2 cut(s) | 142, 168 |
| BciT130I | CCWGG | 1 cut(s) | 325 |
| BcnI | CCSGG | 1 cut(s) | 272 |
| BfaI | CTAG | 1 cut(s) | 188 |
| BfmI | CTRYAG | 1 cut(s) | 367 |
| BfuAI | ACCTGC | 1 cut(s) | 62 |
| BisI | GCNGC | 1 cut(s) | 101 |
| BlsI | GCNGC | 1 cut(s) | 102 |
| Bme1390I | CCNGG | 2 cut(s) | 272, 325 |
| BmrFI | CCNGG | 2 cut(s) | 272, 325 |
| BpmI | CTGGAG | 1 cut(s) | 131 |
| BpuMI | CCSGG | 1 cut(s) | 272 |
| Bse1I | ACTGG | 2 cut(s) | 114, 391 |
| BseBI | CCWGG | 1 cut(s) | 325 |
| BseGI | GGATG | 2 cut(s) | 40, 179 |
| BseNI | ACTGG | 2 cut(s) | 114, 391 |
| BseXI | GCAGC | 1 cut(s) | 87 |
| BsiSI | CCGG | 1 cut(s) | 271 |
| BspMI | ACCTGC | 1 cut(s) | 62 |
| BsrI | ACTGG | 2 cut(s) | 114, 391 |
| Bst2UI | CCWGG | 1 cut(s) | 325 |
| Bst4CI | ACNGT | 2 cut(s) | 64, 368 |
| BstDEI | CTNAG | 1 cut(s) | 350 |
| BstEII | GGTNACC | 1 cut(s) | 127 |
| BstF5I | GGATG | 2 cut(s) | 40, 179 |
| BstNI | CCWGG | 1 cut(s) | 325 |
| BstPI | GGTNACC | 1 cut(s) | 127 |
| BstSCI | CCNGG | 2 cut(s) | 270, 323 |
| BstSFI | CTRYAG | 1 cut(s) | 367 |
| BstV1I | GCAGC | 1 cut(s) | 87 |
| BtsCI | GGATG | 2 cut(s) | 40, 179 |
| BtsIMutI | CAGTG | 1 cut(s) | 144 |
| BveI | ACCTGC | 1 cut(s) | 62 |
| CaiI | CAGNNNCTG | 1 cut(s) | 13 |
| Csp6I | GTAC | 1 cut(s) | 5 |
| CviAII | CATG | 1 cut(s) | 155 |
| CviJI | RGCY | 5 cut(s) | 13, 93, 100, 355, 362 |
| CviKI_1 | RGCY | 5 cut(s) | 13, 93, 100, 355, 362 |
| CviQI | GTAC | 1 cut(s) | 5 |
| DdeI | CTNAG | 1 cut(s) | 350 |
| Eco91I | GGTNACC | 1 cut(s) | 127 |
| EcoO65I | GGTNACC | 1 cut(s) | 127 |
| EcoRII | CCWGG | 1 cut(s) | 323 |
| FaeI | CATG | 1 cut(s) | 158 |
| FaiI | YATR | 6 cut(s) | 19, 28, 80, 125, 156, 308 |
| FatI | CATG | 1 cut(s) | 154 |
| Fnu4HI | GCNGC | 1 cut(s) | 101 |
| FokI | GGATG | 2 cut(s) | 27, 186 |
| Fsp4HI | GCNGC | 1 cut(s) | 101 |
| FspBI | CTAG | 1 cut(s) | 188 |
| GluI | GCNGC | 1 cut(s) | 101 |
| GsuI | CTGGAG | 1 cut(s) | 131 |
| HapII | CCGG | 1 cut(s) | 271 |
| Hin1II | CATG | 1 cut(s) | 158 |
| HincII | GTYRAC | 1 cut(s) | 185 |
| HindII | GTYRAC | 1 cut(s) | 185 |
| HinfI | GANTC | 1 cut(s) | 265 |
| HpaII | CCGG | 1 cut(s) | 271 |
| HphI | GGTGA | 2 cut(s) | 86, 260 |
| Hpy166II | GTNNAC | 2 cut(s) | 185, 374 |
| Hpy188I | TCNGA | 2 cut(s) | 24, 264 |
| Hpy8I | GTNNAC | 2 cut(s) | 185, 374 |
| HpyAV | CCTTC | 1 cut(s) | 193 |
| HpyCH4III | ACNGT | 2 cut(s) | 64, 368 |
| HpyCH4IV | ACGT | 1 cut(s) | 346 |
| HpyCH4V | TGCA | 2 cut(s) | 154, 298 |
| HpyF3I | CTNAG | 1 cut(s) | 350 |
| HpySE526I | ACGT | 1 cut(s) | 346 |
| Hsp92II | CATG | 1 cut(s) | 158 |
| LmnI | GCTCC | 1 cut(s) | 68 |
| LpnPI | CCDG | 6 cut(s) | 57, 95, 284, 310, 337, 372 |
| Lsp1109I | GCAGC | 1 cut(s) | 87 |
| MaeI | CTAG | 1 cut(s) | 188 |
| MaeII | ACGT | 1 cut(s) | 346 |
| MaeIII | GTNAC | 4 cut(s) | 127, 139, 281, 382 |
| MfeI | CAATTG | 1 cut(s) | 84 |
| MluCI | AATT | 2 cut(s) | 84, 332 |
| MmeI | TCCRAC | 2 cut(s) | 46, 151 |
| MnlI | CCTC | 1 cut(s) | 48 |
| MseI | TTAA | 3 cut(s) | 59, 335, 342 |
| MspI | CCGG | 1 cut(s) | 271 |
| MspR9I | CCNGG | 2 cut(s) | 272, 325 |
| MunI | CAATTG | 1 cut(s) | 84 |
| MvaI | CCWGG | 1 cut(s) | 325 |
| NciI | CCSGG | 1 cut(s) | 272 |
| NlaIII | CATG | 1 cut(s) | 158 |
| NmuCI | GTSAC | 1 cut(s) | 139 |
| PaqCI | CACCTGC | 1 cut(s) | 62 |
| PfeI | GAWTC | 1 cut(s) | 265 |
| PflFI | GACNNNGTC | 1 cut(s) | 145 |
| PkrI | GCNGC | 1 cut(s) | 102 |
| Psp6I | CCWGG | 1 cut(s) | 323 |
| PspEI | GGTNACC | 1 cut(s) | 127 |
| PspGI | CCWGG | 1 cut(s) | 323 |
| PstNI | CAGNNNCTG | 1 cut(s) | 13 |
| PsyI | GACNNNGTC | 1 cut(s) | 145 |
| RsaI | GTAC | 1 cut(s) | 6 |
| RsaNI | GTAC | 1 cut(s) | 5 |
| SaqAI | TTAA | 3 cut(s) | 59, 335, 342 |
| SatI | GCNGC | 1 cut(s) | 101 |
| ScrFI | CCNGG | 2 cut(s) | 272, 325 |
| SetI | ASST | 5 cut(s) | 15, 76, 102, 349, 364 |
| SfcI | CTRYAG | 1 cut(s) | 367 |
| Sse9I | AATT | 2 cut(s) | 84, 332 |
| SspI | AATATT | 1 cut(s) | 49 |
| SspMI | CTAG | 1 cut(s) | 188 |
| StyD4I | CCNGG | 2 cut(s) | 270, 323 |
| TaaI | ACNGT | 2 cut(s) | 64, 368 |
| TaiI | ACGT | 1 cut(s) | 349 |
| TasI | AATT | 2 cut(s) | 84, 332 |
| TfiI | GAWTC | 1 cut(s) | 265 |
| Tru1I | TTAA | 3 cut(s) | 59, 335, 342 |
| Tru9I | TTAA | 3 cut(s) | 59, 335, 342 |
| TscAI | CASTG | 1 cut(s) | 144 |
| TseFI | GTSAC | 1 cut(s) | 139 |
| TseI | GCWGC | 1 cut(s) | 100 |
| Tsp45I | GTSAC | 1 cut(s) | 139 |
| TspDTI | ATGAA | 2 cut(s) | 317, 345 |
| TspRI | CASTG | 1 cut(s) | 144 |
| Tth111I | GACNNNGTC | 1 cut(s) | 145 |
| XspI | CTAG | 1 cut(s) | 188 |