Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006428

Physical Location & Seq

Genomic Coordinates Reverse (-)

67246157 .. 67252268

Gene Structure 6112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG414800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGATGGTTATGGTTCAGGGGCTTGGTTGTCTACCTTGATTGTCTTTCTCACAGCCAGAAAAAGAGAGGAATACCTTGGGTTGGTGGAAGGGTTGCCAACATAAGTGCAGGAAGAATTACTGGACAACAGTCTCCGGGAAGGATGAGCTTTGTAATGGCAGTGACATTGATAAGCACACCTACTAGCATGAGCAGAAAGCAATCCTATGGAGAAGGATGGCTCGATGGTGAATGCTACTGGGTTAAATACTTCAAATACAGCAAGATCGACAGTGATGAAATCAATTGTTCCATGCCTTCAGGCTTCTCGCTCCTTCTCCTCAAAAGCCTGAGAGGGTTGGAAGATAACGCAGAAGACAACCGCCTCTACGCTCGGAACCCAATCGACATCGCTTCTCTTCGTCCCTCCCAACTCGAAGAGTTCGTCAAAGCTCTTGGTAAGCCTCATGCAGTACTTTCCAAAGAGGCCTTGGCAAAGAAACAAGCCACCGAAACTGGTGAGGTCTTTGAATTATTGTCAACAGGAAAGAGCTATATTGGTGAGCCAGAATGCTTTAAAATTTATTCTTCCATCTACATTACGGAGTCGAAAATATATGTAATTGGTATGGTGTATCAATGCAGGTGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

211

Amino Acids

23.8

Weight (kDa)

8.96

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006428)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054821 RchiOBHm_Chr5g0054951 RchiOBHm_Chr5g0061411 RchiOBHm_Chr5g0082371 RchiOBHm_Chr7g0192241
rosa_roxburghii	Rroxscaffold_1G00025860 Rroxscaffold_1G00026060 Rroxscaffold_1G00026160
rosa_rugosa	Rorug03G0357000 Rorug03G0357100 Rorug05G0288000
rosa_samantha	Rh3BG343700 Rh4CG064300 Rh5AG359300 Rh5BG366800 Rh5BG370200 Rh5BG414800 Rh5CG392700 Rh5CG439500 Rh5DG383800 Rh5DG429200 Rh5DG520300 Rh6BG403900 Rh7CG516000 Rh7DG262600
rosa_wichuraiana	Rw7G042170 Rw7G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	615
Acc36I	ACCTGC	1 cut(s)	615
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	256, 512
AluBI	AGCT	4 cut(s)	150, 434, 534, 633
AluI	AGCT	4 cut(s)	150, 434, 534, 633
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	630
ApoI	RAATTY	1 cut(s)	561
ArsI	GACNNNNNNTTYG	2 cut(s)	411, 443
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	3 cut(s)	242, 512, 554
BbsI	GAAGAC	1 cut(s)	363
BccI	CCATC	3 cut(s)	213, 221, 581
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	615
BisI	GCNGC	1 cut(s)	631
BlsI	GCNGC	1 cut(s)	632
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	138
BmrI	ACTGGG	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	250
BoxI	GACNNNNGTC	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	77, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	3 cut(s)	127, 245, 502
BseDI	CCNNGG	2 cut(s)	77, 471
BseGI	GGATG	2 cut(s)	150, 224
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	3 cut(s)	127, 245, 502
BseRI	GAGGAG	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	390
BsmI	GAATGC	2 cut(s)	239, 557
BsnI	GGCC	1 cut(s)	470
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	380
BspMI	ACCTGC	1 cut(s)	615
BsrI	ACTGG	3 cut(s)	127, 245, 502
BssECI	CCNNGG	2 cut(s)	77, 471
BssMI	GATC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	77, 471
Bst4CI	ACNGT	2 cut(s)	132, 275
Bst6I	CTCTTC	2 cut(s)	405, 414
BstDEI	CTNAG	1 cut(s)	332
BstF5I	GGATG	2 cut(s)	150, 224
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	630
BstPAI	GACNNNNGTC	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	470
BtgZI	GCGATG	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	150, 224
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	168, 280
BveI	ACCTGC	1 cut(s)	615
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	3 cut(s)	190, 295, 449
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
DraI	TTTAAA	1 cut(s)	559
Eam1104I	CTCTTC	2 cut(s)	405, 414
EarI	CTCTTC	2 cut(s)	405, 414
Eco130I	CCWWGG	2 cut(s)	77, 471
Eco147I	AGGCCT	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	285
EcoT14I	CCWWGG	2 cut(s)	77, 471
ErhI	CCWWGG	2 cut(s)	77, 471
FaeI	CATG	3 cut(s)	193, 298, 452
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	3 cut(s)	189, 294, 448
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	631
FokI	GGATG	2 cut(s)	157, 231
Fsp4HI	GCNGC	1 cut(s)	631
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	631
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	3 cut(s)	193, 298, 452
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	1 cut(s)	587
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	3 cut(s)	242, 512, 554
Hpy166II	GTNNAC	2 cut(s)	34, 522
Hpy188I	TCNGA	1 cut(s)	378
Hpy8I	GTNNAC	2 cut(s)	34, 522
HpyAV	CCTTC	5 cut(s)	84, 135, 209, 309, 326
HpyCH4III	ACNGT	2 cut(s)	132, 275
HpyCH4V	TGCA	4 cut(s)	110, 452, 624, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	630
HpyF3I	CTNAG	1 cut(s)	332
Hsp92II	CATG	3 cut(s)	193, 298, 452
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	318
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	6 cut(s)	126, 356, 368, 392, 431, 561
MfeI	CAATTG	1 cut(s)	286
MluCI	AATT	5 cut(s)	117, 286, 512, 561, 603
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	8 cut(s)	62, 329, 332, 377, 418, 456, 460, 496
MseI	TTAA	2 cut(s)	246, 558
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	286
Mva1269I	GAATGC	2 cut(s)	239, 557
MwoI	GCNNNNNNNGC	1 cut(s)	630
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	3 cut(s)	193, 298, 452
NlaIV	GGNNCC	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	163
PaqCI	CACCTGC	1 cut(s)	615
PceI	AGGCCT	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PctI	GAATGC	2 cut(s)	239, 557
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	632
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
PshAI	GACNNNNGTC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	380
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	246, 558
SatI	GCNGC	1 cut(s)	631
Sau3AI	GATC	1 cut(s)	267
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	9 cut(s)	39, 79, 152, 184, 436, 507, 536, 629, 635
Sse9I	AATT	5 cut(s)	117, 286, 512, 561, 603
SseBI	AGGCCT	1 cut(s)	470
SsiI	CCGC	1 cut(s)	364
SspMI	CTAG	1 cut(s)	186
StuI	AGGCCT	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	2 cut(s)	77, 471
TaaI	ACNGT	2 cut(s)	132, 275
TaqI	TCGA	5 cut(s)	225, 270, 387, 417, 590
TasI	AATT	5 cut(s)	117, 286, 512, 561, 603
TatI	WGTACW	1 cut(s)	454
Tru1I	TTAA	2 cut(s)	246, 558
Tru9I	TTAA	2 cut(s)	246, 558
TscAI	CASTG	2 cut(s)	168, 280
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	630
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	1 cut(s)	599
TspRI	CASTG	2 cut(s)	168, 280
XapI	RAATTY	1 cut(s)	561
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.