Mur ligase family, catalytic domain
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0054821 RchiOBHm_Chr5g0054951 RchiOBHm_Chr5g0061411 RchiOBHm_Chr5g0082371 RchiOBHm_Chr7g0192241 |
| rosa_roxburghii | Rroxscaffold_1G00025860 Rroxscaffold_1G00026060 Rroxscaffold_1G00026160 |
| rosa_rugosa | Rorug03G0357000 Rorug03G0357100 Rorug05G0288000 |
| rosa_samantha | Rh3BG343700 Rh4CG064300 Rh5AG359300 Rh5BG366800 Rh5BG370200 Rh5BG414800 Rh5CG392700 Rh5CG439500 Rh5DG383800 Rh5DG429200 Rh5DG520300 Rh6BG403900 Rh7CG516000 Rh7DG262600 |
| rosa_wichuraiana | Rw7G042170 Rw7G042190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 92 |
| Acc36I | ACCTGC | 1 cut(s) | 92 |
| AcuI | CTGAAG | 3 cut(s) | 159, 185, 198 |
| AfaI | GTAC | 1 cut(s) | 36 |
| AgsI | TTSAA | 1 cut(s) | 196 |
| AluBI | AGCT | 2 cut(s) | 43, 130 |
| AluI | AGCT | 2 cut(s) | 43, 130 |
| Alw26I | GTCTC | 1 cut(s) | 210 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 43 |
| AsuHPI | GGTGA | 2 cut(s) | 38, 116 |
| BcoDI | GTCTC | 1 cut(s) | 210 |
| BfuAI | ACCTGC | 1 cut(s) | 92 |
| BmiI | GGNNCC | 1 cut(s) | 220 |
| BpmI | CTGGAG | 1 cut(s) | 161 |
| Bse1I | ACTGG | 1 cut(s) | 144 |
| BseGI | GGATG | 1 cut(s) | 70 |
| BseMII | CTCAG | 1 cut(s) | 221 |
| BseNI | ACTGG | 1 cut(s) | 144 |
| BsmAI | GTCTC | 1 cut(s) | 210 |
| Bsp143I | GATC | 1 cut(s) | 164 |
| BspCNI | CTCAG | 1 cut(s) | 220 |
| BspLI | GGNNCC | 1 cut(s) | 220 |
| BspMI | ACCTGC | 1 cut(s) | 92 |
| BsrI | ACTGG | 1 cut(s) | 144 |
| BssMI | GATC | 1 cut(s) | 164 |
| Bst4CI | ACNGT | 1 cut(s) | 94 |
| BstDEI | CTNAG | 1 cut(s) | 207 |
| BstF5I | GGATG | 1 cut(s) | 70 |
| BstKTI | GATC | 1 cut(s) | 167 |
| BstMAI | GTCTC | 1 cut(s) | 210 |
| BstMBI | GATC | 1 cut(s) | 164 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 262, 271 |
| BtsCI | GGATG | 1 cut(s) | 70 |
| BveI | ACCTGC | 1 cut(s) | 92 |
| CaiI | CAGNNNCTG | 1 cut(s) | 43 |
| Csp6I | GTAC | 1 cut(s) | 35 |
| CviAII | CATG | 1 cut(s) | 31 |
| CviJI | RGCY | 5 cut(s) | 17, 43, 123, 130, 211 |
| CviKI_1 | RGCY | 5 cut(s) | 17, 43, 123, 130, 211 |
| CviQI | GTAC | 1 cut(s) | 35 |
| DdeI | CTNAG | 1 cut(s) | 207 |
| DpnI | GATC | 1 cut(s) | 166 |
| DpnII | GATC | 1 cut(s) | 164 |
| Eco57I | CTGAAG | 3 cut(s) | 159, 185, 198 |
| EcoT22I | ATGCAT | 1 cut(s) | 159 |
| FaeI | CATG | 1 cut(s) | 34 |
| FatI | CATG | 1 cut(s) | 30 |
| FokI | GGATG | 1 cut(s) | 57 |
| GsuI | CTGGAG | 1 cut(s) | 161 |
| Hin1II | CATG | 1 cut(s) | 34 |
| HphI | GGTGA | 2 cut(s) | 38, 116 |
| Hpy188I | TCNGA | 2 cut(s) | 54, 169 |
| HpyAV | CCTTC | 3 cut(s) | 183, 209, 222 |
| HpyCH4III | ACNGT | 1 cut(s) | 94 |
| HpyCH4V | TGCA | 1 cut(s) | 157 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 262, 271 |
| HpyF3I | CTNAG | 1 cut(s) | 207 |
| Hsp92II | CATG | 1 cut(s) | 34 |
| Kzo9I | GATC | 1 cut(s) | 164 |
| LmnI | GCTCC | 1 cut(s) | 98 |
| LpnPI | CCDG | 3 cut(s) | 87, 125, 201 |
| MaeIII | GTNAC | 1 cut(s) | 26 |
| MalI | GATC | 1 cut(s) | 166 |
| MboI | GATC | 1 cut(s) | 164 |
| MfeI | CAATTG | 1 cut(s) | 114 |
| MluCI | AATT | 1 cut(s) | 114 |
| MmeI | TCCRAC | 1 cut(s) | 76 |
| MnlI | CCTC | 1 cut(s) | 78 |
| Mph1103I | ATGCAT | 1 cut(s) | 159 |
| MseI | TTAA | 2 cut(s) | 89, 280 |
| MunI | CAATTG | 1 cut(s) | 114 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 262, 271 |
| NdeII | GATC | 1 cut(s) | 164 |
| NlaIII | CATG | 1 cut(s) | 34 |
| NlaIV | GGNNCC | 1 cut(s) | 220 |
| NmuCI | GTSAC | 1 cut(s) | 26 |
| NsiI | ATGCAT | 1 cut(s) | 159 |
| PaqCI | CACCTGC | 1 cut(s) | 92 |
| PspN4I | GGNNCC | 1 cut(s) | 220 |
| PstNI | CAGNNNCTG | 1 cut(s) | 43 |
| RsaI | GTAC | 1 cut(s) | 36 |
| RsaNI | GTAC | 1 cut(s) | 35 |
| SaqAI | TTAA | 2 cut(s) | 89, 280 |
| Sau3AI | GATC | 1 cut(s) | 164 |
| SetI | ASST | 6 cut(s) | 45, 106, 132, 175, 201, 220 |
| SgeI | CNNG | 9 cut(s) | 35, 43, 73, 114, 152, 174, 200, 228, 269 |
| Sse9I | AATT | 1 cut(s) | 114 |
| SspI | AATATT | 1 cut(s) | 79 |
| TaaI | ACNGT | 1 cut(s) | 94 |
| TaqI | TCGA | 2 cut(s) | 163, 189 |
| TasI | AATT | 1 cut(s) | 114 |
| Tru1I | TTAA | 2 cut(s) | 89, 280 |
| Tru9I | TTAA | 2 cut(s) | 89, 280 |
| TseFI | GTSAC | 1 cut(s) | 26 |
| Tsp45I | GTSAC | 1 cut(s) | 26 |
| Zsp2I | ATGCAT | 1 cut(s) | 159 |