Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015588

Physical Location & Seq

Genomic Coordinates Reverse (-)

85993560 .. 85995149

Gene Structure 1590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGATCTATTCCGTCGAGATGGCGTTGGCGGTAGCTGTGGGATTTGCGACAATGACACATTGGTTGGCTTCCATGGTTGAAAACCGTGAGCCAGTGTCTAATGATAATCGAGAATTGGCCGACGTGGACCCCCCTGCATCTCTTCTTTCATCAGCTGAATCATCGTCAGCTTCCATGGTTGAAAACCCTGAGCCAATGCCGGAGGAAAATCAAGAATTGGTCCCCTCTACATCTCTTTTATCATCAGCAGCTCCTTGGCAGAAGTATGACGTTTTTCTGAGTTTCAGGGGTGCAGACACTCGTAAGGGTTTTGTATCCCACTTACACCATGAATTGCAGACTGTGAGAGGGATTCAAACATTCAAGGATGACAAAGATCTTGAAACAGGAAGCCCTATTTCTTCAAGTCTGCTAAAGGCAATCGAAGAATCAAATTTTGCAATTGTTGTTCTGTCGGAAAACTATGCTCATTCTGCATGGTGTTTGGAGGAACTTACAAAGATTTGTCAATGCATGAAAGACAAGAACAGAATCCTACCCCTGTTTTATTATGTCCAACCAAGTGATGTGCGGCATCAAAATGGGACTTTCGGAGATGCTTTAACTAAGCATGGAAACTTGGGCCGGCACAATTCAGAGAAGGTGCAGCGGTGGAGGGATGCTTTACACAGAGTGGCCGGTTTCTCTGGGCGTAATGCACAAGATTTTCAGACTGAAAGAGATCTTGTCGAAGCCATTGTGGATACTGTGGGCAGTAAAGTACGACCTATTGAAACTGAGTTTATTATTTCCTCGATCCATTTTGAACCATTTCAAGCAACAAGAGAAGCCATGGATAAAGTAATGGAGGCGCTAAAAGATGAAAACATCACTATCATTGGGGTTTACGGAATTGGAGGTGTTGGAAAGTCAACAATGGTGGAACATGTTGGTTTAGAAGCCCAAAAAAAAGGCTTTTCCCTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

323

Amino Acids

35.97

Weight (kDa)

5.27

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	89 - 258	1.7e-50	TIR domain
TIR_2	PF13676	92 - 185	3.7e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44030 FvH4_3g44030
rosa_chinensis	RchiOBHm_Chr5g0079591 RchiOBHm_Chr5g0080151 RchiOBHm_Chr5g0080161 RchiOBHm_Chr5g0080261 RchiOBHm_Chr5g0080311
rosa_multiflora	Rmu_sc0001803.1_g000037 Rmu_sc0002513.1_g000013 Rmu_sc0007806.1_g000017 Rmu_sc0009793.1_g000003
rosa_roxburghii	Rroxscaffold_1G00003050
rosa_rugosa	Rorug05G0468000
rosa_wichuraiana	Rw0G023400 Rw5G048450 Rw5G048480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	32, 574, 652
AclWI	GGATC	1 cut(s)	793
AcoI	YGGCCR	2 cut(s)	120, 678
AcsI	RAATTY	1 cut(s)	436
AdeI	CACNNNGTG	1 cut(s)	676
AfaI	GTAC	1 cut(s)	765
AflIII	ACRYGT	1 cut(s)	928
AgsI	TTSAA	9 cut(s)	83, 185, 359, 367, 386, 408, 776, 809, 818
AjiI	CACGTC	1 cut(s)	127
AluBI	AGCT	4 cut(s)	38, 158, 173, 254
AluI	AGCT	4 cut(s)	38, 158, 173, 254
AlwI	GGATC	1 cut(s)	793
AoxI	GGCC	3 cut(s)	120, 625, 678
ApeKI	GCWGC	2 cut(s)	251, 649
ApoI	RAATTY	1 cut(s)	436
Asp700I	GAANNNNTTC	1 cut(s)	813
AspLEI	GCGC	1 cut(s)	856
AspS9I	GGNCC	3 cut(s)	130, 223, 625
AvaII	GGWCC	2 cut(s)	130, 223
AxyI	CCTNAGG	1 cut(s)	965
BbvI	GCAGC	2 cut(s)	263, 661
BccI	CCATC	1 cut(s)	16
BciVI	GTATCC	2 cut(s)	328, 739
BfoI	RGCGCY	1 cut(s)	857
BfuI	GTATCC	2 cut(s)	328, 739
BglII	AGATCT	3 cut(s)	6, 379, 724
BisI	GCNGC	3 cut(s)	252, 575, 650
BlsI	GCNGC	3 cut(s)	253, 576, 651
Bme18I	GGWCC	2 cut(s)	130, 223
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	130, 223, 625
BmiI	GGNNCC	2 cut(s)	132, 225
BmsI	GCATC	4 cut(s)	149, 586, 589, 652
Bpu10I	CCTNAGC	1 cut(s)	192
BsaJI	CCNNGG	4 cut(s)	75, 177, 257, 834
Bse118I	RCCGGY	2 cut(s)	627, 680
Bse1I	ACTGG	1 cut(s)	95
Bse21I	CCTNAGG	1 cut(s)	965
BseDI	CCNNGG	4 cut(s)	75, 177, 257, 834
BseGI	GGATG	2 cut(s)	376, 667
BseMII	CTCAG	3 cut(s)	183, 272, 771
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	263, 661
BsgI	GTGCAG	2 cut(s)	315, 668
BshFI	GGCC	3 cut(s)	122, 627, 680
BsiSI	CCGG	3 cut(s)	203, 628, 681
BslFI	GGGAC	2 cut(s)	209, 601
BsmFI	GGGAC	2 cut(s)	209, 601
BsnI	GGCC	3 cut(s)	122, 627, 680
Bsp143I	GATC	4 cut(s)	6, 379, 724, 798
Bsp19I	CCATGG	3 cut(s)	75, 177, 834
BspACI	CCGC	3 cut(s)	32, 574, 652
BspANI	GGCC	3 cut(s)	122, 627, 680
BspCNI	CTCAG	3 cut(s)	184, 273, 772
BspLI	GGNNCC	2 cut(s)	132, 225
BspPI	GGATC	1 cut(s)	793
BsrFI	RCCGGY	2 cut(s)	627, 680
BsrI	ACTGG	1 cut(s)	95
BssAI	RCCGGY	2 cut(s)	627, 680
BssECI	CCNNGG	4 cut(s)	75, 177, 257, 834
BssMI	GATC	4 cut(s)	6, 379, 724, 798
BssT1I	CCWWGG	4 cut(s)	75, 177, 257, 834
Bst4CI	ACNGT	3 cut(s)	89, 346, 751
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	629
BstDEI	CTNAG	5 cut(s)	192, 281, 609, 780, 965
BstDSI	CCRYGG	3 cut(s)	75, 177, 834
BstF5I	GGATG	2 cut(s)	376, 667
BstH2I	RGCGCY	1 cut(s)	857
BstHHI	GCGC	1 cut(s)	856
BstKTI	GATC	4 cut(s)	9, 382, 727, 801
BstMBI	GATC	4 cut(s)	6, 379, 724, 798
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNSI	RCATGY	1 cut(s)	932
BstV1I	GCAGC	2 cut(s)	263, 661
BstX2I	RGATCY	3 cut(s)	6, 379, 724
BstYI	RGATCY	3 cut(s)	6, 379, 724
Bsu36I	CCTNAGG	1 cut(s)	965
BsuI	GTATCC	2 cut(s)	328, 739
BsuRI	GGCC	3 cut(s)	122, 627, 680
BtgI	CCRYGG	3 cut(s)	75, 177, 834
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	376, 667
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	629
CfoI	GCGC	1 cut(s)	856
Cfr10I	RCCGGY	2 cut(s)	627, 680
Cfr13I	GGNCC	3 cut(s)	130, 223, 625
Csp6I	GTAC	1 cut(s)	764
CspCI	CAANNNNNGTGG	2 cut(s)	903, 938
CviAII	CATG	8 cut(s)	76, 178, 332, 480, 517, 614, 835, 929
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	5 cut(s)	192, 281, 609, 780, 965
DpnI	GATC	4 cut(s)	8, 381, 726, 800
DpnII	GATC	4 cut(s)	6, 379, 724, 798
DraIII	CACNNNGTG	1 cut(s)	676
EaeI	YGGCCR	2 cut(s)	120, 678
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	4 cut(s)	75, 177, 257, 834
Eco47I	GGWCC	2 cut(s)	130, 223
Eco81I	CCTNAGG	1 cut(s)	965
EcoT14I	CCWWGG	4 cut(s)	75, 177, 257, 834
EcoT22I	ATGCAT	1 cut(s)	518
ErhI	CCWWGG	4 cut(s)	75, 177, 257, 834
FaeI	CATG	8 cut(s)	79, 181, 335, 483, 520, 617, 838, 932
FaqI	GGGAC	2 cut(s)	209, 601
FatI	CATG	8 cut(s)	75, 177, 331, 479, 516, 613, 834, 928
Fnu4HI	GCNGC	3 cut(s)	252, 575, 650
FokI	GGATG	2 cut(s)	383, 674
Fsp4HI	GCNGC	3 cut(s)	252, 575, 650
GlaI	GCGC	1 cut(s)	855
GluI	GCNGC	3 cut(s)	252, 575, 650
HaeII	RGCGCY	1 cut(s)	857
HaeIII	GGCC	3 cut(s)	122, 627, 680
HapII	CCGG	3 cut(s)	203, 628, 681
HhaI	GCGC	1 cut(s)	856
Hin1II	CATG	8 cut(s)	79, 181, 335, 483, 520, 617, 838, 932
Hin6I	GCGC	1 cut(s)	854
HinP1I	GCGC	1 cut(s)	854
HincII	GTYRAC	1 cut(s)	915
HindII	GTYRAC	1 cut(s)	915
HinfI	GANTC	4 cut(s)	161, 355, 431, 534
HpaII	CCGG	3 cut(s)	203, 628, 681
Hpy166II	GTNNAC	3 cut(s)	130, 889, 915
Hpy188I	TCNGA	5 cut(s)	282, 460, 596, 640, 714
Hpy188III	TCNNGA	4 cut(s)	19, 113, 215, 383
Hpy8I	GTNNAC	3 cut(s)	130, 889, 915
Hpy99I	CGWCG	2 cut(s)	20, 128
HpyAV	CCTTC	1 cut(s)	637
HpyCH4III	ACNGT	3 cut(s)	89, 346, 751
HpyCH4IV	ACGT	2 cut(s)	126, 273
HpyCH4V	TGCA	8 cut(s)	140, 296, 340, 443, 479, 516, 649, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	5 cut(s)	192, 281, 609, 780, 965
HpySE526I	ACGT	2 cut(s)	126, 273
Hsp92II	CATG	8 cut(s)	79, 181, 335, 483, 520, 617, 838, 932
HspAI	GCGC	1 cut(s)	854
KroI	GCCGGC	1 cut(s)	627
KroNI	GCCGGC	1 cut(s)	629
Kzo9I	GATC	4 cut(s)	6, 379, 724, 798
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	263, 661
LweI	GCATC	4 cut(s)	149, 586, 589, 652
MaeII	ACGT	2 cut(s)	126, 273
MalI	GATC	4 cut(s)	8, 381, 726, 800
MboI	GATC	4 cut(s)	6, 379, 724, 798
MboII	GAAGA	3 cut(s)	137, 396, 440
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	3 cut(s)	6, 379, 724
MluCI	AATT	7 cut(s)	116, 218, 335, 436, 444, 634, 894
MmeI	TCCRAC	3 cut(s)	438, 583, 886
MnlI	CCTC	8 cut(s)	199, 238, 344, 484, 651, 805, 844, 893
Mph1103I	ATGCAT	1 cut(s)	518
MroNI	GCCGGC	1 cut(s)	627
MroXI	GAANNNNTTC	1 cut(s)	813
MseI	TTAA	1 cut(s)	605
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	158, 652
MspI	CCGG	3 cut(s)	203, 628, 681
MunI	CAATTG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	476
NaeI	GCCGGC	1 cut(s)	629
NcoI	CCATGG	3 cut(s)	75, 177, 834
NdeII	GATC	4 cut(s)	6, 379, 724, 798
NgoMIV	GCCGGC	1 cut(s)	627
NlaIII	CATG	8 cut(s)	79, 181, 335, 483, 520, 617, 838, 932
NlaIV	GGNNCC	2 cut(s)	132, 225
NsiI	ATGCAT	1 cut(s)	518
NspI	RCATGY	1 cut(s)	932
PciI	ACATGT	1 cut(s)	928
PdiI	GCCGGC	1 cut(s)	629
PdmI	GAANNNNTTC	1 cut(s)	813
PfeI	GAWTC	4 cut(s)	161, 355, 431, 534
PkrI	GCNGC	3 cut(s)	253, 576, 651
PscI	ACATGT	1 cut(s)	928
PspN4I	GGNNCC	2 cut(s)	132, 225
PspPI	GGNCC	3 cut(s)	130, 223, 625
PsuI	RGATCY	3 cut(s)	6, 379, 724
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	3 cut(s)	252, 575, 650
Sau3AI	GATC	4 cut(s)	6, 379, 724, 798
Sau96I	GGNCC	3 cut(s)	130, 223, 625
SfaNI	GCATC	4 cut(s)	149, 586, 589, 652
SinI	GGWCC	2 cut(s)	130, 223
SmiMI	CAYNNNNRTG	1 cut(s)	582
Sse9I	AATT	7 cut(s)	116, 218, 335, 436, 444, 634, 894
SsiI	CCGC	3 cut(s)	32, 574, 652
StyI	CCWWGG	4 cut(s)	75, 177, 257, 834
TaaI	ACNGT	3 cut(s)	89, 346, 751
TaiI	ACGT	2 cut(s)	129, 276
TaqI	TCGA	5 cut(s)	18, 112, 426, 732, 797
TasI	AATT	7 cut(s)	116, 218, 335, 436, 444, 634, 894
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	4 cut(s)	161, 355, 431, 534
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	2 cut(s)	251, 649
TspDTI	ATGAA	4 cut(s)	141, 348, 533, 879
TspGWI	ACGGA	2 cut(s)	4, 906
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	130, 223
XapI	RAATTY	1 cut(s)	436
XceI	RCATGY	1 cut(s)	932
XmnI	GAANNNNTTC	1 cut(s)	813
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.