Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016961

Physical Location & Seq

Genomic Coordinates Forward (+)

6183525 .. 6184016

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22487

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGTCAACTTGGTCTCCTCGTCGACTATACAAATACGATGTGTTTCTAAGCTTCAGAGGGGAAGATACCCGCGAGACTTTCACCTGCCATCTGTATCGTGCGCTAACTGCGAAAGGAATTATAACCTTCATAGATGACGAAAGCCTGGAGAGAGGATCAACCATTGGCCCATCACTTTTTACAGCAATTCAGGACTCAAGATTCGCCCTTGTCGTTCTTTCACAGAATTTCGCTTCTTCATCCTGGTGCTTGGATGAACTCTCCAAGATTTTTCAATGCTTGGTAAGGAGGGGACGATTCGTCTTCCCGATCTTCTACCGAGTGGCTCCCTCTGATGTGCGCAAGCAAACGGGAAGTTTTCAGCTGCGTACAGTAGCGGTAAGGGAACATGAAGAAGTTTATGGAAATAAGGACAAACTAGAGGAGTGGAGACATGCTTTGACAACGGTTGGCGGTATTGGTGGGTGGGTCTCGGAGGATTATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

163

Amino Acids

18.78

Weight (kDa)

8.46

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	12 - 161	3.6e-46	TIR domain
TIR_2	PF13676	15 - 117	4.9e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016961)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22040
rosa_chinensis	RchiOBHm_Chr1g0323671 RchiOBHm_Chr6g0250671 RchiOBHm_Chr6g0250861 RchiOBHm_Chr6g0268381
rosa_laevigata	RLG00000014455 RLG00000015492 RLG00000015493 RLG00000015519 RLG00000015529 RLG00000030319 RLG00000030321
rosa_multiflora	Rmu_sc0041838.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	125, 486
AarI	CACCTGC	1 cut(s)	95
Acc16I	TGCGCA	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	25
AccII	CGCG	1 cut(s)	75
AciI	CCGC	3 cut(s)	73, 380, 456
AclWI	GGATC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	373
AgsI	TTSAA	1 cut(s)	278
AhdI	GACNNNNNGTC	1 cut(s)	302
AjnI	CCWGG	2 cut(s)	147, 245
AluBI	AGCT	2 cut(s)	54, 367
AluI	AGCT	2 cut(s)	54, 367
Alw26I	GTCTC	4 cut(s)	21, 71, 427, 478
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	229
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspLEI	GCGC	2 cut(s)	106, 345
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	2 cut(s)	99, 181
BciT130I	CCWGG	2 cut(s)	149, 247
BcoDI	GTCTC	4 cut(s)	21, 71, 427, 478
BfaI	CTAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	369
Bme1390I	CCNGG	2 cut(s)	149, 247
BmeRI	GACNNNNNGTC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	2 cut(s)	149, 247
BpiI	GAAGAC	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	21, 478
BsaXI	ACNNNNNCTCC	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	149, 247
BseGI	GGATG	2 cut(s)	242, 262
BseRI	GAGGAG	2 cut(s)	9, 440
BseXI	GCAGC	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	309
BsmAI	GTCTC	4 cut(s)	21, 71, 427, 478
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	2 cut(s)	21, 478
Bsp143I	GATC	2 cut(s)	158, 312
BspACI	CCGC	3 cut(s)	73, 380, 456
BspANI	GGCC	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	330
BspMI	ACCTGC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	166
BspTNI	GGTCTC	2 cut(s)	21, 478
BssMI	GATC	2 cut(s)	158, 312
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	149, 247
Bst4CI	ACNGT	2 cut(s)	376, 451
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	242, 262
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	106, 345
BstKTI	GATC	2 cut(s)	161, 315
BstMAI	GTCTC	4 cut(s)	21, 71, 427, 478
BstMBI	GATC	2 cut(s)	158, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	2 cut(s)	149, 247
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	147, 245
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	354
BstV2I	GAAGAC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	242, 262
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	347
CfoI	GCGC	2 cut(s)	106, 345
Cfr13I	GGNCC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	2 cut(s)	392, 437
CviJI	RGCY	5 cut(s)	54, 147, 171, 329, 367
CviKI_1	RGCY	5 cut(s)	54, 147, 171, 329, 367
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	160, 314
DpnII	GATC	2 cut(s)	158, 312
DriI	GACNNNNNGTC	1 cut(s)	302
Eam1105I	GACNNNNNGTC	1 cut(s)	302
Eco31I	GGTCTC	2 cut(s)	21, 478
Eco57I	CTGAAG	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	147, 245
FaeI	CATG	2 cut(s)	395, 440
FaiI	YATR	7 cut(s)	31, 125, 134, 393, 405, 438, 486
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	2 cut(s)	391, 436
FauI	CCCGC	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	368
FokI	GGATG	2 cut(s)	229, 269
Fsp4HI	GCNGC	1 cut(s)	368
FspBI	CTAG	1 cut(s)	422
FspI	TGCGCA	1 cut(s)	344
GlaI	GCGC	2 cut(s)	105, 344
GluI	GCNGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	171
HhaI	GCGC	2 cut(s)	106, 345
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	395, 440
Hin6I	GCGC	2 cut(s)	104, 343
HinP1I	GCGC	2 cut(s)	104, 343
HincII	GTYRAC	2 cut(s)	9, 26
HindII	GTYRAC	2 cut(s)	9, 26
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	3 cut(s)	197, 204, 300
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	9, 26
Hpy188I	TCNGA	3 cut(s)	59, 337, 478
Hpy188III	TCNNGA	3 cut(s)	194, 201, 310
Hpy8I	GTNNAC	2 cut(s)	9, 26
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	376, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	395, 440
HspAI	GCGC	2 cut(s)	104, 343
Kzo9I	GATC	2 cut(s)	158, 312
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	6 cut(s)	100, 134, 161, 179, 232, 259
Lsp1109I	GCAGC	1 cut(s)	354
MaeI	CTAG	1 cut(s)	422
MalI	GATC	2 cut(s)	160, 314
MboI	GATC	2 cut(s)	158, 312
MboII	GAAGA	5 cut(s)	77, 231, 298, 307, 407
MluCI	AATT	3 cut(s)	120, 189, 229
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	7 cut(s)	30, 53, 149, 285, 343, 418, 472
MslI	CAYNNNNRTG	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	367
MspR9I	CCNGG	2 cut(s)	149, 247
MvaI	CCWGG	2 cut(s)	149, 247
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	2 cut(s)	158, 312
NlaIII	CATG	2 cut(s)	395, 440
NlaIV	GGNNCC	1 cut(s)	330
NsbI	TGCGCA	1 cut(s)	344
NspI	RCATGY	1 cut(s)	440
PaqCI	CACCTGC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	204, 300
PkrI	GCNGC	1 cut(s)	369
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PsiI	TTATAA	2 cut(s)	125, 486
Psp6I	CCWGG	2 cut(s)	147, 245
PspGI	CCWGG	2 cut(s)	147, 245
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	247
SalI	GTCGAC	1 cut(s)	24
SatI	GCNGC	1 cut(s)	368
Sau3AI	GATC	2 cut(s)	158, 312
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	149, 247
SetI	ASST	4 cut(s)	56, 89, 131, 369
SmiMI	CAYNNNNRTG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	3 cut(s)	120, 189, 229
SsiI	CCGC	3 cut(s)	73, 380, 456
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	147, 245
TaaI	ACNGT	2 cut(s)	376, 451
TaqI	TCGA	1 cut(s)	25
TasI	AATT	3 cut(s)	120, 189, 229
TfiI	GAWTC	2 cut(s)	204, 300
TseI	GCWGC	1 cut(s)	367
TspDTI	ATGAA	4 cut(s)	121, 231, 273, 408
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	25
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.