Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016961

Physical Location & Seq

Genomic Coordinates Reverse (-)

66707772 .. 66709985

Gene Structure 2214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGTCAACTTGGTCTCCTCGTCGACAATGGAAATACGATGTTTTTCTAAGCTTCAGAGGGGAAGATACCCGCGAGACTTTCATCTGCCATCTGTATCGTGCACTAACTGCGAAAGGAATTATAACCTTCTTAGATGACGAAAGCCTGGAGAGAGGATCAACCATTGGCCCATCACTTTTTACAGCAATTGAGGATTCAAGATTGGCCATCGTTGTTCTTTCACAGAATTTCGCTTCTTCATCGTGGTGCTTGGATGAACTCTCGAAGATTCTTCAATGCATGAAACCATTGAAACCCTCGAAGATCAGGACGAGATCAGTCGTCCCGATCTTCTATCGAGTGGCTCCCTCTGATGTGCGCAAGCAAAGGAGAAGTTTTCAGCTCCGTCCAGTCGAGGTAAGGGAACATGAAGAAGTTTATGAGAATAAGGACAAACTAAAGGAGGATGACGGAAATTTGATTGAGCGAATTGTTGGGATTATACTAAGTGTACTAGGTGATGCTTATACCTCTTCAAGTGTTGACAAGGGCTTCATAGGAATGGATTCCCGCATTCATGATCTATTAAGCAATTACATATGTCCGCAGCTTGGCGGGGTGCGTTTTATAGGGATCCATGGCATGCGAGGCATAGGTAAGACAACACTTGCTCGAGCTATCCATGATGAAATTTGTCAGGATTTTGACCGAAGCTGCATTCTTTACAATGTTAGAGAAAAATCCGAAAAGGATGGCCTAGTTTCTCTACATGAAAAACTACTTTCCCGAATCCTGAGGACAAAAGTTGACATTGAGGATGAATATGCAGGAGCTACTATGATAGAAAGGCGTTTATATATTCATTTGCTAAGGGGACATGATGTTGATGCTACATACAAGGCTACTGGGTTAACTCGTGGTGAAGCTATTCAACTATTGAGTTTAAAGGCTTTCAAGAATAGCTGCCCACCGAAGATTATTTGGGCTTGTGCCGCCATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

329

Amino Acids

37.32

Weight (kDa)

8.69

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	12 - 140	2e-37	TIR domain
TIR_2	PF13676	15 - 130	3.8e-14	TIR domain
NB-ARC	PF00931	200 - 279	2.9e-06	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016961)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22040
rosa_chinensis	RchiOBHm_Chr1g0323671 RchiOBHm_Chr6g0250671 RchiOBHm_Chr6g0250861 RchiOBHm_Chr6g0268381
rosa_laevigata	RLG00000014455 RLG00000015492 RLG00000015493 RLG00000015519 RLG00000015529 RLG00000030319 RLG00000030321
rosa_multiflora	Rmu_sc0041838.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
Acc16I	TGCGCA	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	25
AccII	CGCG	1 cut(s)	75
AciI	CCGC	5 cut(s)	73, 553, 587, 597, 975
AclWI	GGATC	3 cut(s)	166, 610, 623
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	3 cut(s)	229, 457, 672
AcuI	CTGAAG	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	1 cut(s)	593
AgsI	TTSAA	6 cut(s)	201, 278, 295, 519, 914, 937
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	8 cut(s)	54, 385, 592, 659, 696, 815, 908, 945
AluI	AGCT	8 cut(s)	54, 385, 592, 659, 696, 815, 908, 945
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	2 cut(s)	21, 71
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	3 cut(s)	166, 610, 623
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	3 cut(s)	169, 207, 736
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	3 cut(s)	589, 696, 945
ApoI	RAATTY	3 cut(s)	229, 457, 672
Asp700I	GAANNNNTTC	2 cut(s)	547, 909
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	512, 914
AvaI	CYCGRG	1 cut(s)	654
AxyI	CCTNAGG	1 cut(s)	776
BaeGI	GKGCMC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	615
BauI	CACGAG	1 cut(s)	897
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	3 cut(s)	601, 683, 932
BccI	CCATC	4 cut(s)	99, 181, 218, 728
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	21, 71
BfaI	CTAG	2 cut(s)	497, 740
BisI	GCNGC	4 cut(s)	590, 697, 946, 975
BlsI	GCNGC	4 cut(s)	591, 698, 947, 976
Bme1390I	CCNGG	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	654
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	348, 617
BmrFI	CCNGG	1 cut(s)	149
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	2 cut(s)	493, 859
BmuI	ACTGGG	1 cut(s)	897
BpmI	CTGGAG	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	851
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	619
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse1I	ACTGG	2 cut(s)	392, 892
Bse21I	CCTNAGG	1 cut(s)	776
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	4 cut(s)	262, 454, 739, 805
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMII	CTCAG	1 cut(s)	767
BseNI	ACTGG	2 cut(s)	392, 892
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	601, 683, 932
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	171, 209, 738
BsiHKAI	GWGCWC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	654
BslFI	GGGAC	2 cut(s)	311, 870
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	2 cut(s)	21, 71
BsmFI	GGGAC	2 cut(s)	311, 870
BsmI	GAATGC	2 cut(s)	555, 699
BsnI	GGCC	3 cut(s)	171, 209, 738
Bso31I	GGTCTC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	6 cut(s)	158, 306, 317, 330, 562, 615
Bsp19I	CCATGG	1 cut(s)	619
BspACI	CCGC	5 cut(s)	73, 553, 587, 597, 975
BspANI	GGCC	3 cut(s)	171, 209, 738
BspCNI	CTCAG	1 cut(s)	768
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	348, 617
BspPI	GGATC	3 cut(s)	166, 610, 623
BspTNI	GGTCTC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	392, 892
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	6 cut(s)	158, 306, 317, 330, 562, 615
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	897
BssT1I	CCWWGG	1 cut(s)	619
Bst2BI	CACGAG	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	520
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	365, 626
BstDEI	CTNAG	5 cut(s)	50, 133, 488, 776, 851
BstDSI	CCRYGG	1 cut(s)	619
BstF5I	GGATG	4 cut(s)	262, 454, 739, 805
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	6 cut(s)	161, 309, 320, 333, 565, 618
BstMAI	GTCTC	2 cut(s)	21, 71
BstMBI	GATC	6 cut(s)	158, 306, 317, 330, 562, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 630, 974
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	3 cut(s)	601, 683, 932
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
Bsu36I	CCTNAGG	1 cut(s)	776
BsuRI	GGCC	3 cut(s)	171, 209, 738
BtgI	CCRYGG	1 cut(s)	619
BtsCI	GGATG	4 cut(s)	262, 454, 739, 805
Cac8I	GCNNGC	2 cut(s)	365, 626
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	8 cut(s)	283, 410, 560, 620, 625, 665, 752, 860
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	5 cut(s)	50, 133, 488, 776, 851
DpnI	GATC	6 cut(s)	160, 308, 319, 332, 564, 617
DpnII	GATC	6 cut(s)	158, 306, 317, 330, 562, 615
DraI	TTTAAA	1 cut(s)	927
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	619
Eco31I	GGTCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	776
Eco88I	CYCGRG	1 cut(s)	654
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	619
EcoT22I	ATGCAT	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	619
FaeI	CATG	8 cut(s)	286, 413, 563, 623, 628, 668, 755, 863
FaqI	GGGAC	2 cut(s)	311, 870
FatI	CATG	8 cut(s)	282, 409, 559, 619, 624, 664, 751, 859
FauI	CCCGC	3 cut(s)	80, 560, 590
FauNDI	CATATG	1 cut(s)	581
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	590, 697, 946, 975
FokI	GGATG	4 cut(s)	269, 461, 746, 812
Fsp4HI	GCNGC	4 cut(s)	590, 697, 946, 975
FspBI	CTAG	2 cut(s)	497, 740
FspI	TGCGCA	1 cut(s)	362
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	4 cut(s)	590, 697, 946, 975
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	171, 209, 738
HhaI	GCGC	1 cut(s)	363
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	286, 413, 563, 623, 628, 668, 755, 863
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	5 cut(s)	9, 26, 526, 790, 894
HindII	GTYRAC	5 cut(s)	9, 26, 526, 790, 894
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	4 cut(s)	197, 271, 548, 771
HpaI	GTTAAC	1 cut(s)	894
HphI	GGTGA	2 cut(s)	512, 914
Hpy166II	GTNNAC	7 cut(s)	9, 26, 104, 494, 526, 790, 894
Hpy188I	TCNGA	3 cut(s)	59, 355, 727
Hpy188III	TCNNGA	9 cut(s)	201, 265, 310, 328, 560, 680, 768, 775, 937
Hpy8I	GTNNAC	7 cut(s)	9, 26, 104, 494, 526, 790, 894
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	139
HpyCH4V	TGCA	4 cut(s)	104, 282, 699, 809
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 630, 974
HpyF3I	CTNAG	5 cut(s)	50, 133, 488, 776, 851
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	8 cut(s)	286, 413, 563, 623, 628, 668, 755, 863
HspAI	GCGC	1 cut(s)	361
KspAI	GTTAAC	1 cut(s)	894
Kzo9I	GATC	6 cut(s)	158, 306, 317, 330, 562, 615
LmnI	GCTCC	3 cut(s)	352, 390, 812
LpnPI	CCDG	8 cut(s)	134, 161, 295, 405, 665, 788, 795, 873
Lsp1109I	GCAGC	3 cut(s)	601, 683, 932
LweI	GCATC	2 cut(s)	493, 859
MaeI	CTAG	2 cut(s)	497, 740
MalI	GATC	6 cut(s)	160, 308, 319, 332, 564, 617
MboI	GATC	6 cut(s)	158, 306, 317, 330, 562, 615
MboII	GAAGA	9 cut(s)	77, 231, 266, 280, 316, 325, 425, 507, 967
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	7 cut(s)	120, 189, 229, 457, 471, 574, 672
MluNI	TGGCCA	1 cut(s)	209
Mox20I	TGGCCA	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	284
MroXI	GAANNNNTTC	2 cut(s)	547, 909
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	3 cut(s)	569, 893, 926
MslI	CAYNNNNRTG	2 cut(s)	247, 542
Msp20I	TGGCCA	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	2 cut(s)	555, 699
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	110, 630, 974
NcoI	CCATGG	1 cut(s)	619
NdeI	CATATG	1 cut(s)	581
NdeII	GATC	6 cut(s)	158, 306, 317, 330, 562, 615
NlaIII	CATG	8 cut(s)	286, 413, 563, 623, 628, 668, 755, 863
NlaIV	GGNNCC	2 cut(s)	348, 617
NsbI	TGCGCA	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	284
NspI	RCATGY	1 cut(s)	628
PaeI	GCATGC	1 cut(s)	628
PaeR7I	CTCGAG	1 cut(s)	654
PagI	TCATGA	1 cut(s)	559
PctI	GAATGC	2 cut(s)	555, 699
PdmI	GAANNNNTTC	2 cut(s)	547, 909
PfeI	GAWTC	4 cut(s)	197, 271, 548, 771
PkrI	GCNGC	4 cut(s)	591, 698, 947, 976
PsiI	TTATAA	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	348, 617
PspPI	GGNCC	1 cut(s)	170
PspXI	VCTCGAGB	1 cut(s)	654
PsuI	RGATCY	1 cut(s)	615
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
RseI	CAYNNNNRTG	2 cut(s)	247, 542
SalI	GTCGAC	1 cut(s)	24
SaqAI	TTAA	3 cut(s)	569, 893, 926
SatI	GCNGC	4 cut(s)	590, 697, 946, 975
Sau3AI	GATC	6 cut(s)	158, 306, 317, 330, 562, 615
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	2 cut(s)	493, 859
Sfr274I	CTCGAG	1 cut(s)	654
SlaI	CTCGAG	1 cut(s)	654
SmiMI	CAYNNNNRTG	2 cut(s)	247, 542
SmlI	CTYRAG	1 cut(s)	654
SmoI	CTYRAG	1 cut(s)	654
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	7 cut(s)	120, 189, 229, 457, 471, 574, 672
SsiI	CCGC	5 cut(s)	73, 553, 587, 597, 975
SspMI	CTAG	2 cut(s)	497, 740
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	619
TaqI	TCGA	6 cut(s)	25, 266, 302, 340, 396, 655
TaqII	GACCGA	1 cut(s)	705
TasI	AATT	7 cut(s)	120, 189, 229, 457, 471, 574, 672
TatI	WGTACW	1 cut(s)	493
TauI	GCSGC	1 cut(s)	977
TfiI	GAWTC	4 cut(s)	197, 271, 548, 771
Tru1I	TTAA	3 cut(s)	569, 893, 926
Tru9I	TTAA	3 cut(s)	569, 893, 926
TseI	GCWGC	3 cut(s)	589, 696, 945
TspGWI	ACGGA	2 cut(s)	377, 468
VneI	GTGCAC	1 cut(s)	102
XapI	RAATTY	3 cut(s)	229, 457, 672
XceI	RCATGY	1 cut(s)	628
XhoI	CTCGAG	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	25
XmnI	GAANNNNTTC	2 cut(s)	547, 909
XspI	CTAG	2 cut(s)	497, 740
Zsp2I	ATGCAT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.