Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016961

Physical Location & Seq

Genomic Coordinates Reverse (-)

59559044 .. 59559937

Gene Structure 894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGATTCCCGCGTCGATGATTTATTAAGCAATTACATATATCCGCAGCTTGGTGGGGTGCGTTTTATAGGGATCCATGGCATGCGGGGGTTAGGTAAGACAACAGTTGCTCGAGCTATCCATGATGAAATATGTCAGGATTTTGACCGAACCTGCTTTCTTTCCAATGTTAGAGAAATGTCTAAAACCAATGGCCTAGTTTCTCTACAAGAAAAACTTCTTTCCAAAATCCTGATGGAAAAAGTTGAAAATATAGAGGATGAATACACAGGAGCTGCTATGATAGAAAGAAGCATTGATGAATGGGCAAGTGCAATAGATAGGCTAAAGAAAACACCACATAAACGCGTTATTGAGGTGCTTCGGATTAGTTTTGATGGACTGGATGAAAAAGACACAGAAATATTCCTACATATTGCTTGCTTTTACAAGGGGAAGGATAAGGATCGTGTGACACAAATACTAGACTATTGCCAGCTAAACCCTGTCATTGGTTTAAGTGTTCTTGCTGATCGATGTCTCATAACTATCTCCAACAACGAACTGTCGATGCATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.21

Weight (kDa)

5.41

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	19 - 94	3.9e-07	NB-ARC domain
WHD_ROQ1	PF23282	129 - 186	4.9e-13	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016961)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22040
rosa_chinensis	RchiOBHm_Chr1g0323671 RchiOBHm_Chr6g0250671 RchiOBHm_Chr6g0250861 RchiOBHm_Chr6g0268381
rosa_laevigata	RLG00000014455 RLG00000015492 RLG00000015493 RLG00000015519 RLG00000015529 RLG00000030319 RLG00000030321
rosa_multiflora	Rmu_sc0041838.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	161
AccII	CGCG	2 cut(s)	12, 348
AciI	CCGC	3 cut(s)	10, 44, 85
AclWI	GGATC	3 cut(s)	67, 80, 453
AfiI	CCNNNNNNNGG	2 cut(s)	50, 491
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	248
AluBI	AGCT	4 cut(s)	49, 116, 275, 478
AluI	AGCT	4 cut(s)	49, 116, 275, 478
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	3 cut(s)	67, 80, 453
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	46, 275
Asp700I	GAANNNNTTC	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	58, 262
BccI	CCATC	2 cut(s)	229, 371
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	2 cut(s)	197, 464
BfuAI	ACCTGC	1 cut(s)	161
BisI	GCNGC	2 cut(s)	47, 276
BlsI	GCNGC	2 cut(s)	48, 277
BmeT110I	CYCGRG	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	74
BmsI	GCATC	1 cut(s)	540
Bsa29I	ATCGAT	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 491
Bse1I	ACTGG	1 cut(s)	387
Bse8I	GATNNNNATC	1 cut(s)	444
BseCI	ATCGAT	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	265, 391
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	50, 491
BseNI	ACTGG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	58, 262
Bsh1236I	CGCG	2 cut(s)	12, 348
BshFI	GGCC	1 cut(s)	195
BshVI	ATCGAT	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	50, 491
BsmAI	GTCTC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	72, 445, 511
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	3 cut(s)	10, 44, 85
BspANI	GGCC	1 cut(s)	195
BspDI	ATCGAT	1 cut(s)	514
BspFNI	CGCG	2 cut(s)	12, 348
BspLI	GGNNCC	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	3 cut(s)	67, 80, 453
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	3 cut(s)	72, 445, 511
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	106, 546
BstC8I	GCNNGC	3 cut(s)	83, 421, 476
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	265, 391
BstFNI	CGCG	2 cut(s)	12, 348
BstKTI	GATC	3 cut(s)	75, 448, 514
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	3 cut(s)	72, 445, 511
BstNSI	RCATGY	1 cut(s)	85
BstUI	CGCG	2 cut(s)	12, 348
BstV1I	GCAGC	2 cut(s)	58, 262
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
Bsu15I	ATCGAT	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	195
BsuTUI	ATCGAT	1 cut(s)	514
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	265, 391
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	3 cut(s)	83, 421, 476
CaiI	CAGNNNCTG	1 cut(s)	275
ClaI	ATCGAT	1 cut(s)	514
CviAII	CATG	4 cut(s)	77, 82, 122, 554
CviJI	RGCY	6 cut(s)	49, 116, 195, 275, 325, 478
CviKI_1	RGCY	6 cut(s)	49, 116, 195, 275, 325, 478
DpnI	GATC	3 cut(s)	74, 447, 513
DpnII	GATC	3 cut(s)	72, 445, 511
Eco130I	CCWWGG	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	4 cut(s)	80, 85, 125, 557
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	4 cut(s)	76, 81, 121, 553
FauI	CCCGC	2 cut(s)	17, 78
Fnu4HI	GCNGC	2 cut(s)	47, 276
FokI	GGATG	2 cut(s)	272, 398
Fsp4HI	GCNGC	2 cut(s)	47, 276
FspBI	CTAG	2 cut(s)	197, 464
GluI	GCNGC	2 cut(s)	47, 276
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	80, 85, 125, 557
HinfI	GANTC	1 cut(s)	5
Hpy188I	TCNGA	1 cut(s)	366
Hpy188III	TCNNGA	2 cut(s)	137, 232
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	2 cut(s)	106, 546
HpyCH4V	TGCA	2 cut(s)	314, 553
Hsp92II	CATG	4 cut(s)	80, 85, 125, 557
Kzo9I	GATC	3 cut(s)	72, 445, 511
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	7 cut(s)	122, 166, 245, 255, 368, 488, 498
Lsp1109I	GCAGC	2 cut(s)	58, 262
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	2 cut(s)	197, 464
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	3 cut(s)	74, 447, 513
MboI	GATC	3 cut(s)	72, 445, 511
MflI	RGATCY	1 cut(s)	72
MluCI	AATT	1 cut(s)	31
MluI	ACGCGT	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	2 cut(s)	250, 349
Mph1103I	ATGCAT	1 cut(s)	555
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	3 cut(s)	26, 497, 559
MvnI	CGCG	2 cut(s)	12, 348
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	3 cut(s)	72, 445, 511
NlaIII	CATG	4 cut(s)	80, 85, 125, 557
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	451
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	1 cut(s)	85
PaeI	GCATGC	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	48, 277
PspN4I	GGNNCC	1 cut(s)	74
PspXI	VCTCGAGB	1 cut(s)	111
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	26, 497, 559
SatI	GCNGC	2 cut(s)	47, 276
Sau3AI	GATC	3 cut(s)	72, 445, 511
SetI	ASST	7 cut(s)	51, 97, 118, 155, 277, 360, 480
SfaNI	GCATC	1 cut(s)	540
Sfr274I	CTCGAG	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
SphI	GCATGC	1 cut(s)	85
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	10, 44, 85
SspI	AATATT	1 cut(s)	405
SspMI	CTAG	2 cut(s)	197, 464
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	106, 546
TaqI	TCGA	4 cut(s)	15, 112, 514, 548
TaqII	GACCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	26, 497, 559
Tru9I	TTAA	3 cut(s)	26, 497, 559
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	2 cut(s)	46, 275
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	4 cut(s)	141, 276, 315, 402
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	197, 464
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.