Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016961

Physical Location & Seq

Genomic Coordinates Reverse (-)

67574434 .. 67576445

Gene Structure 2012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015529

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAGAATTGTTTCAACGGAGGGAGCAACTGTGAAGCTTTGTAAAAATGGAGGAGAAGCTGTAGATGTAATTCGCATAGATCTACTCAACCAAGGGAAACATGAATATGATTTTGTACTAATGGACTATGACGAAAGCCTGGAAAGAGGATCAACCATTGGCCCATCGCTTTTTACTGCAATTCAGGACTCAAGAATTGCCCTTGTCGTTCTTTCACAGAATTTCGCTTCTTCATCCTGGCTCTTGGATGAACTCTCCAAGATTCTTCGATCCATGGAAACAAGGGGACGCGTCATCCCGATCTTCCACAAAGTGGATCCTTCTGATGTGCGCAAGCAAAGGGGAAGTTTTCAGCTCCGTACGGTAAAGGAACATGAAGAAGTTTATGACAAACGAAAGGAGTGGACAGATGCTTTGACAAAGGTGGCCAATCTTGTTGGGATTCATTCGAGTGGCCAGAATGTTGACAAGGGCTTCATAGGAATGGATTCCCGCATTGATGATTTTTCAAGCAATTACACACGTCCACAGCTTGGTGGGGTGCGTTTTATAGGGATCCATGGCATGCGGGGCATAGGTAAGACAACACTTGCTCGAGCCATTTATGATGAACTGTCTCGCAGGTTTGACAGAAGCTGCATTCTTTACAATGTTAGAGAAAAATCTGAAAAGGATGGCCTTGTTTCTCTACAAGAAAAACTACTTTCCAGAATCCTGAGGACAAAAGTTGACATTGAGGATGAATATGCAGGAGCTACTACCCCTAGTAGTCCTAAGGTAGAGGAATCCATTGTTGTACTACTGATTAAAAATGAAGAGCGCCGGCGGAGAATAGTATACCAGTTCATGAAGAGCAGCCTTGGGATAAAGGTATCAGTGGTAGAACAATGGGAAAGTACAATAGATAGGCTAAACAATACACCACATAGACAAGTTATGGATGTGCTTCAGATTAGTTTTGATGGACTAGAGGAAAAAGACAAACAAATATTCCTACATATTGCTTGTTTGTACAAGGAGAAGGACAGGGATCGTGTGACACAAATACTAGGCTATTGCAAGCTAGAACCTGACAAACAAAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

363

Amino Acids

41.42

Weight (kDa)

8.2

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	34 - 160	2e-29	TIR domain
TIR_2	PF13676	35 - 122	1.5e-07	TIR domain
NB-ARC	PF00931	180 - 246	7.5e-07	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016961)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22040
rosa_chinensis	RchiOBHm_Chr1g0323671 RchiOBHm_Chr6g0250671 RchiOBHm_Chr6g0250861 RchiOBHm_Chr6g0268381
rosa_laevigata	RLG00000014455 RLG00000015492 RLG00000015493 RLG00000015519 RLG00000015529 RLG00000030319 RLG00000030321
rosa_multiflora	Rmu_sc0041838.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	612
AccB7I	CCANNNNNTGG	2 cut(s)	313, 533
AccI	GTMKAC	1 cut(s)	837
AccII	CGCG	1 cut(s)	291
AciI	CCGC	3 cut(s)	493, 568, 826
AclWI	GGATC	7 cut(s)	157, 264, 311, 324, 550, 563, 1038
AcoI	YGGCCR	2 cut(s)	426, 454
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	932
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	5 cut(s)	117, 361, 798, 898, 1013
AfiI	CCNNNNNNNGG	2 cut(s)	313, 533
AflIII	ACRYGT	2 cut(s)	289, 521
AgsI	TTSAA	2 cut(s)	15, 510
AjiI	CACGTC	1 cut(s)	524
AjnI	CCWGG	2 cut(s)	138, 236
AluBI	AGCT	7 cut(s)	37, 59, 355, 532, 636, 755, 1063
AluI	AGCT	7 cut(s)	37, 59, 355, 532, 636, 755, 1063
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	7 cut(s)	157, 264, 311, 324, 550, 563, 1038
AlwNI	CAGNNNCTG	1 cut(s)	636
Ama87I	CYCGRG	1 cut(s)	594
AoxI	GGCC	4 cut(s)	160, 426, 454, 676
ApeKI	GCWGC	2 cut(s)	636, 855
ApoI	RAATTY	1 cut(s)	220
ArsI	GACNNNNNNTTYG	2 cut(s)	397, 429
Asp700I	GAANNNNTTC	2 cut(s)	10, 487
AspLEI	GCGC	2 cut(s)	333, 822
AspS9I	GGNCC	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	594
AxyI	CCTNAGG	2 cut(s)	716, 774
BalI	TGGCCA	2 cut(s)	428, 456
BamHI	GGATCC	2 cut(s)	316, 555
BbvI	GCAGC	2 cut(s)	623, 867
BccI	CCATC	3 cut(s)	172, 668, 956
BciT130I	CCWGG	2 cut(s)	140, 238
BcoDI	GTCTC	1 cut(s)	621
BfaI	CTAG	4 cut(s)	765, 968, 1049, 1064
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	823
BfuAI	ACCTGC	1 cut(s)	612
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	2 cut(s)	637, 856
BlsI	GCNGC	2 cut(s)	638, 857
Bme1390I	CCNGG	2 cut(s)	140, 238
BmeT110I	CYCGRG	1 cut(s)	594
BmgBI	CACGTC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	318, 557
BmrFI	CCNGG	2 cut(s)	140, 238
BmsI	GCATC	1 cut(s)	400
BpuEI	CTTGAG	1 cut(s)	175
BsaJI	CCNNGG	4 cut(s)	91, 273, 559, 859
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 45, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 533
Bse118I	RCCGGY	1 cut(s)	822
Bse1I	ACTGG	1 cut(s)	841
Bse21I	CCTNAGG	2 cut(s)	716, 774
BseBI	CCWGG	2 cut(s)	140, 238
BseDI	CCNNGG	4 cut(s)	91, 273, 559, 859
BseGI	GGATG	6 cut(s)	233, 253, 294, 679, 745, 946
BseLI	CCNNNNNNNGG	2 cut(s)	313, 533
BseMII	CTCAG	1 cut(s)	707
BseNI	ACTGG	1 cut(s)	841
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	623, 867
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	4 cut(s)	162, 428, 456, 678
BsiHKCI	CYCGRG	1 cut(s)	594
BsiSI	CCGG	1 cut(s)	823
BsiWI	CGTACG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	313, 533
BsmAI	GTCTC	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	4 cut(s)	162, 428, 456, 678
BsoBI	CYCGRG	1 cut(s)	594
Bsp1407I	TGTACA	1 cut(s)	1011
Bsp143I	GATC	7 cut(s)	79, 149, 269, 300, 316, 555, 1030
Bsp19I	CCATGG	2 cut(s)	273, 559
BspACI	CCGC	3 cut(s)	493, 568, 826
BspANI	GGCC	4 cut(s)	162, 428, 456, 678
BspCNI	CTCAG	1 cut(s)	708
BspFNI	CGCG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	846
BspLI	GGNNCC	2 cut(s)	318, 557
BspMI	ACCTGC	1 cut(s)	612
BspPI	GGATC	7 cut(s)	157, 264, 311, 324, 550, 563, 1038
BspQI	GCTCTTC	2 cut(s)	810, 845
BsrFI	RCCGGY	1 cut(s)	822
BsrGI	TGTACA	1 cut(s)	1011
BsrI	ACTGG	1 cut(s)	841
BssAI	RCCGGY	1 cut(s)	822
BssECI	CCNNGG	4 cut(s)	91, 273, 559, 859
BssMI	GATC	7 cut(s)	79, 149, 269, 300, 316, 555, 1030
BssNAI	GTATAC	1 cut(s)	838
BssT1I	CCWWGG	4 cut(s)	91, 273, 559, 859
Bst1107I	GTATAC	1 cut(s)	838
Bst2UI	CCWGG	2 cut(s)	140, 238
Bst4CI	ACNGT	3 cut(s)	31, 364, 615
Bst6I	CTCTTC	2 cut(s)	810, 845
BstAUI	TGTACA	1 cut(s)	1011
BstC8I	GCNNGC	4 cut(s)	335, 566, 824, 1061
BstDEI	CTNAG	2 cut(s)	716, 774
BstDSI	CCRYGG	2 cut(s)	273, 559
BstF5I	GGATG	6 cut(s)	233, 253, 294, 679, 745, 946
BstFNI	CGCG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	823
BstHHI	GCGC	2 cut(s)	333, 822
BstKTI	GATC	7 cut(s)	82, 152, 272, 303, 319, 558, 1033
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	7 cut(s)	79, 149, 269, 300, 316, 555, 1030
BstMWI	GCNNNNNNNGC	1 cut(s)	570
BstNI	CCWGG	2 cut(s)	140, 238
BstNSI	RCATGY	1 cut(s)	568
BstSCI	CCNGG	2 cut(s)	138, 236
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	623, 867
BstX2I	RGATCY	3 cut(s)	79, 316, 555
BstYI	RGATCY	3 cut(s)	79, 316, 555
BstZ17I	GTATAC	1 cut(s)	838
Bsu36I	CCTNAGG	2 cut(s)	716, 774
BsuRI	GGCC	4 cut(s)	162, 428, 456, 678
BtgI	CCRYGG	2 cut(s)	273, 559
BtgZI	GCGATG	1 cut(s)	150
BtrI	CACGTC	1 cut(s)	524
BtsCI	GGATG	6 cut(s)	233, 253, 294, 679, 745, 946
BtsIMutI	CAGTG	1 cut(s)	882
BveI	ACCTGC	1 cut(s)	612
Cac8I	GCNNGC	4 cut(s)	335, 566, 824, 1061
CaiI	CAGNNNCTG	1 cut(s)	636
CciI	TCATGA	1 cut(s)	846
CfoI	GCGC	2 cut(s)	333, 822
Cfr10I	RCCGGY	1 cut(s)	822
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	2 cut(s)	280, 297
Csp6I	GTAC	5 cut(s)	116, 360, 797, 897, 1012
CviAII	CATG	6 cut(s)	101, 274, 374, 560, 565, 847
CviQI	GTAC	5 cut(s)	116, 360, 797, 897, 1012
DdeI	CTNAG	2 cut(s)	716, 774
DpnI	GATC	7 cut(s)	81, 151, 271, 302, 318, 557, 1032
DpnII	GATC	7 cut(s)	79, 149, 269, 300, 316, 555, 1030
DraIII	CACNNNGTG	1 cut(s)	313
EaeI	YGGCCR	2 cut(s)	426, 454
Eam1104I	CTCTTC	2 cut(s)	810, 845
EarI	CTCTTC	2 cut(s)	810, 845
EciI	GGCGGA	1 cut(s)	841
Eco130I	CCWWGG	4 cut(s)	91, 273, 559, 859
Eco57I	CTGAAG	1 cut(s)	932
Eco81I	CCTNAGG	2 cut(s)	716, 774
Eco88I	CYCGRG	1 cut(s)	594
EcoRII	CCWGG	2 cut(s)	138, 236
EcoT14I	CCWWGG	4 cut(s)	91, 273, 559, 859
ErhI	CCWWGG	4 cut(s)	91, 273, 559, 859
FaeI	CATG	6 cut(s)	104, 277, 377, 563, 568, 850
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	6 cut(s)	100, 273, 373, 559, 564, 846
FauI	CCCGC	2 cut(s)	500, 561
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	2 cut(s)	637, 856
FokI	GGATG	6 cut(s)	220, 260, 281, 686, 752, 953
Fsp4HI	GCNGC	2 cut(s)	637, 856
FspBI	CTAG	4 cut(s)	765, 968, 1049, 1064
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	2 cut(s)	332, 821
GluI	GCNGC	2 cut(s)	637, 856
HaeII	RGCGCY	1 cut(s)	823
HaeIII	GGCC	4 cut(s)	162, 428, 456, 678
HapII	CCGG	1 cut(s)	823
HgaI	GACGC	2 cut(s)	280, 297
HhaI	GCGC	2 cut(s)	333, 822
Hin1II	CATG	6 cut(s)	104, 277, 377, 563, 568, 850
Hin6I	GCGC	2 cut(s)	331, 820
HinP1I	GCGC	2 cut(s)	331, 820
HincII	GTYRAC	2 cut(s)	466, 730
HindII	GTYRAC	2 cut(s)	466, 730
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	6 cut(s)	188, 262, 442, 488, 711, 785
HpaII	CCGG	1 cut(s)	823
Hpy166II	GTNNAC	5 cut(s)	405, 466, 527, 730, 838
Hpy188I	TCNGA	4 cut(s)	325, 667, 951, 1088
Hpy188III	TCNNGA	6 cut(s)	185, 192, 298, 708, 715, 847
Hpy8I	GTNNAC	5 cut(s)	405, 466, 527, 730, 838
HpyAV	CCTTC	2 cut(s)	330, 1015
HpyCH4III	ACNGT	3 cut(s)	31, 364, 615
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	4 cut(s)	179, 639, 749, 1059
HpyF10VI	GCNNNNNNNGC	1 cut(s)	570
HpyF3I	CTNAG	2 cut(s)	716, 774
HpySE526I	ACGT	1 cut(s)	523
Hsp92II	CATG	6 cut(s)	104, 277, 377, 563, 568, 850
HspAI	GCGC	2 cut(s)	331, 820
KroI	GCCGGC	1 cut(s)	822
KroNI	GCCGGC	1 cut(s)	824
Kzo9I	GATC	7 cut(s)	79, 149, 269, 300, 316, 555, 1030
LguI	GCTCTTC	2 cut(s)	810, 845
LmnI	GCTCC	3 cut(s)	23, 360, 752
Lsp1109I	GCAGC	2 cut(s)	623, 867
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	4 cut(s)	765, 968, 1049, 1064
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	1 cut(s)	1036
MalI	GATC	7 cut(s)	81, 151, 271, 302, 318, 557, 1032
MboI	GATC	7 cut(s)	79, 149, 269, 300, 316, 555, 1030
MboII	GAAGA	6 cut(s)	222, 257, 295, 389, 827, 862
MflI	RGATCY	3 cut(s)	79, 316, 555
MlsI	TGGCCA	2 cut(s)	428, 456
MluCI	AATT	6 cut(s)	6, 69, 180, 195, 220, 514
MluI	ACGCGT	1 cut(s)	289
MluNI	TGGCCA	2 cut(s)	428, 456
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	7 cut(s)	13, 44, 140, 711, 730, 775, 964
Mox20I	TGGCCA	2 cut(s)	428, 456
MreI	CGCCGGCG	1 cut(s)	822
MroNI	GCCGGC	1 cut(s)	822
MroXI	GAANNNNTTC	2 cut(s)	10, 487
MscI	TGGCCA	2 cut(s)	428, 456
MseI	TTAA	1 cut(s)	807
MslI	CAYNNNNRTG	3 cut(s)	105, 450, 482
Msp20I	TGGCCA	2 cut(s)	428, 456
MspI	CCGG	1 cut(s)	823
MspR9I	CCNGG	2 cut(s)	140, 238
Mva1269I	GAATGC	1 cut(s)	639
MvaI	CCWGG	2 cut(s)	140, 238
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	570
NaeI	GCCGGC	1 cut(s)	824
NcoI	CCATGG	2 cut(s)	273, 559
NdeII	GATC	7 cut(s)	79, 149, 269, 300, 316, 555, 1030
NgoMIV	GCCGGC	1 cut(s)	822
NlaIII	CATG	6 cut(s)	104, 277, 377, 563, 568, 850
NlaIV	GGNNCC	2 cut(s)	318, 557
NmuCI	GTSAC	1 cut(s)	1036
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	1 cut(s)	568
PaeI	GCATGC	1 cut(s)	568
PaeR7I	CTCGAG	1 cut(s)	594
PagI	TCATGA	1 cut(s)	846
PciSI	GCTCTTC	2 cut(s)	810, 845
PctI	GAATGC	1 cut(s)	639
PdiI	GCCGGC	1 cut(s)	824
PdmI	GAANNNNTTC	2 cut(s)	10, 487
PfeI	GAWTC	5 cut(s)	262, 442, 488, 711, 785
Pfl23II	CGTACG	1 cut(s)	359
PflMI	CCANNNNNTGG	2 cut(s)	313, 533
PkrI	GCNGC	2 cut(s)	638, 857
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	138, 236
PspGI	CCWGG	2 cut(s)	138, 236
PspLI	CGTACG	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	318, 557
PspPI	GGNCC	1 cut(s)	161
PspXI	VCTCGAGB	1 cut(s)	594
PstNI	CAGNNNCTG	1 cut(s)	636
PsuI	RGATCY	3 cut(s)	79, 316, 555
RsaI	GTAC	5 cut(s)	117, 361, 798, 898, 1013
RsaNI	GTAC	5 cut(s)	116, 360, 797, 897, 1012
RseI	CAYNNNNRTG	3 cut(s)	105, 450, 482
SapI	GCTCTTC	2 cut(s)	810, 845
SaqAI	TTAA	1 cut(s)	807
SatI	GCNGC	2 cut(s)	637, 856
Sau3AI	GATC	7 cut(s)	79, 149, 269, 300, 316, 555, 1030
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	140, 238
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	594
SgrAI	CRCCGGYG	1 cut(s)	822
SlaI	CTCGAG	1 cut(s)	594
SmiMI	CAYNNNNRTG	3 cut(s)	105, 450, 482
SmlI	CTYRAG	2 cut(s)	190, 594
SmoI	CTYRAG	2 cut(s)	190, 594
SphI	GCATGC	1 cut(s)	568
Sse9I	AATT	6 cut(s)	6, 69, 180, 195, 220, 514
SsiI	CCGC	3 cut(s)	493, 568, 826
SspI	AATATT	1 cut(s)	990
SspMI	CTAG	4 cut(s)	765, 968, 1049, 1064
StyD4I	CCNGG	2 cut(s)	138, 236
StyI	CCWWGG	4 cut(s)	91, 273, 559, 859
TaaI	ACNGT	3 cut(s)	31, 364, 615
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	3 cut(s)	268, 449, 595
TasI	AATT	6 cut(s)	6, 69, 180, 195, 220, 514
TatI	WGTACW	4 cut(s)	115, 796, 896, 1011
TfiI	GAWTC	5 cut(s)	262, 442, 488, 711, 785
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TscAI	CASTG	1 cut(s)	882
TseFI	GTSAC	1 cut(s)	1036
TseI	GCWGC	2 cut(s)	636, 855
Tsp45I	GTSAC	1 cut(s)	1036
TspGWI	ACGGA	2 cut(s)	32, 347
TspRI	CASTG	1 cut(s)	882
Van91I	CCANNNNNTGG	2 cut(s)	313, 533
XapI	RAATTY	1 cut(s)	220
XceI	RCATGY	1 cut(s)	568
XhoI	CTCGAG	1 cut(s)	594
XmiI	GTMKAC	1 cut(s)	837
XmnI	GAANNNNTTC	2 cut(s)	10, 487
XspI	CTAG	4 cut(s)	765, 968, 1049, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.