RLG00000014455

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016961
Physical Location & Seq
Reverse (-)
53344757 .. 53348955
4199 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014455

Sequence Viewer

Length: 408 bp
ATGGAGAGCAGCTCTTTCAGAAGCAGCAAATTTATCTGGATGGCATTTCTCGGGCGGATATTAGAAGGTTGTGACCGCAACAACCCCAAGCTTAGTATTGAAGTTCTTGAAGAAAAGGCGCTCATAAATGTTGATAGATTTGGTTGTATTTGCTTGCATGATTTGCTAGAAGATATGGGAAAAGATATAGCTCGGCAAGAGTCTACCGAGCTCGGTGAGCGAAGCAGATTGTGGCATCACAAGGATGTGCAGGATGTTCTAACAGAAAACATGGGAACAAGTAAAACTGAAGGTATAATGATAAAAATGCCTACAACAGATGAGATACGCTTGAATCCTAAATGCTTCAAAAAGATGAGAAATCTTAAAATTTTCATAAACATCAACGGACGAGTATGCAAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

136

Amino Acids

15.65

Weight (kDa)

8.3

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_ROQ1 PF23282 28 - 68 1.9e-08 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 203
AciI CCGC 2 cut(s) 55, 76
AcsI RAATTY 2 cut(s) 29, 369
AcuI CTGAAG 1 cut(s) 309
AgsI TTSAA 4 cut(s) 101, 110, 334, 349
AluBI AGCT 4 cut(s) 12, 91, 191, 211
AluI AGCT 4 cut(s) 12, 91, 191, 211
Alw21I GWGCWC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 9, 24
ApoI RAATTY 2 cut(s) 29, 369
AspLEI GCGC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 50
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 21, 36
BccI CCATC 1 cut(s) 34
BfaI CTAG 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 122
BisI GCNGC 2 cut(s) 10, 25
BlsI GCNGC 2 cut(s) 11, 26
BmeT110I CYCGRG 1 cut(s) 50
BmsI GCATC 1 cut(s) 244
BplI GAGNNNNNCTC 1 cut(s) 28
BseGI GGATG 3 cut(s) 45, 250, 259
BseXI GCAGC 2 cut(s) 21, 36
BsgI GTGCAG 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 213
BspACI CCGC 2 cut(s) 55, 76
BstAPI GCANNNNNTGC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 3 cut(s) 45, 250, 259
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 163, 217
BstV1I GCAGC 2 cut(s) 21, 36
BtsCI GGATG 3 cut(s) 45, 250, 259
Cac8I GCNNGC 1 cut(s) 155
CfoI GCGC 1 cut(s) 121
CviAII CATG 2 cut(s) 158, 271
CviJI RGCY 4 cut(s) 12, 91, 191, 211
CviKI_1 RGCY 4 cut(s) 12, 91, 191, 211
DdeI CTNAG 1 cut(s) 92
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 2 cut(s) 161, 274
FaiI YATR 8 cut(s) 125, 159, 176, 188, 272, 296, 377, 397
FatI CATG 2 cut(s) 157, 270
FblI GTMKAC 1 cut(s) 203
Fnu4HI GCNGC 2 cut(s) 10, 25
FokI GGATG 3 cut(s) 52, 257, 266
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 10, 25
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 120
GluI GCNGC 2 cut(s) 10, 25
HaeII RGCGCY 1 cut(s) 122
HhaI GCGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 161, 274
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 2 cut(s) 200, 334
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 2 cut(s) 20, 407
Hpy188III TCNNGA 2 cut(s) 37, 107
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 2 cut(s) 59, 284
HpyCH4V TGCA 3 cut(s) 157, 250, 399
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 217
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 2 cut(s) 161, 274
HspAI GCGC 1 cut(s) 119
LpnPI CCDG 2 cut(s) 22, 236
Lsp1109I GCAGC 2 cut(s) 21, 36
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 71
MboII GAAGA 2 cut(s) 122, 182
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 2 cut(s) 29, 369
MlyI GAGTC 1 cut(s) 209
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 163, 217
NlaIII CATG 2 cut(s) 161, 274
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 2 cut(s) 11, 26
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 243
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 10, 25
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 1 cut(s) 213
SetI ASST 6 cut(s) 14, 70, 93, 193, 213, 295
SfaNI GCATC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 2 cut(s) 29, 369
SsiI CCGC 2 cut(s) 55, 76
SspMI CTAG 1 cut(s) 167
SstI GAGCTC 1 cut(s) 213
TasI AATT 2 cut(s) 29, 369
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 2 cut(s) 9, 24
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 364
TspGWI ACGGA 1 cut(s) 402
XapI RAATTY 2 cut(s) 29, 369
XmiI GTMKAC 1 cut(s) 203
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.