Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016961

Physical Location & Seq

Genomic Coordinates Reverse (-)

67420673 .. 67421264

Gene Structure 592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCGTCAACTTGGTCTCCTCGTCGACAATGGAAATACGATGTTTTTCTAAGCTTCAGAGGGGAAGATACCCGCGAGACTTTCATCTGCCATCTGTATCGTGCACTAACTGCGAAAGGAATTATAACCTTCTTAGAAGACGAAAGCCTGGAGAGAGGATCAACCATTGGCCCATCACTTTTTACAGCAATTGAGGATTCAAGATTGGCCATCGTCGTTCTTTCACAGAATTTCGCTTCTTCATCGTGGTGCTTGGATGAACTCTCGAAGATCGGGACGAGATCAGTCGTCCCGATCTTCTACCGAGTGGCTCCCTCTGATGTGCGCAAGCAAAGGAGAAGTTTTCAGCTCCGTCCAGTCGAGGTAAGGGAACATGAAGAAGTTTATGAGAATAAGGACAAACTAAAGGAGTGGGCAGATGCTTTGACAACGGTGGCCAAAATTTCTGGGTTTCCTTCGAGGCAGTTTAAGGGTAATCCATCCGCAGATTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

166

Amino Acids

18.99

Weight (kDa)

8.93

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	12 - 157	8.2e-39	TIR domain
TIR_2	PF13676	15 - 118	4.2e-13	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016961)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22040
rosa_chinensis	RchiOBHm_Chr1g0323671 RchiOBHm_Chr6g0250671 RchiOBHm_Chr6g0250861 RchiOBHm_Chr6g0268381
rosa_laevigata	RLG00000014455 RLG00000015492 RLG00000015493 RLG00000015519 RLG00000015529 RLG00000030319 RLG00000030321
rosa_multiflora	Rmu_sc0041838.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
Acc16I	TGCGCA	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	25
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	73, 483
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	2 cut(s)	207, 435
AcsI	RAATTY	2 cut(s)	229, 441
AcuI	CTGAAG	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	201
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	54, 349
AluI	AGCT	2 cut(s)	54, 349
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	2 cut(s)	21, 71
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	3 cut(s)	169, 207, 435
ApaLI	GTGCAC	1 cut(s)	102
ApoI	RAATTY	2 cut(s)	229, 441
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	106
BalI	TGGCCA	2 cut(s)	209, 437
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	106
BccI	CCATC	4 cut(s)	99, 181, 218, 487
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	21, 71
Bme1390I	CCNGG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	21
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	262, 479
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	171, 209, 437
BsiHKAI	GWGCWC	1 cut(s)	106
BslFI	GGGAC	2 cut(s)	275, 289
BsmAI	GTCTC	2 cut(s)	21, 71
BsmFI	GGGAC	2 cut(s)	275, 289
BsnI	GGCC	3 cut(s)	171, 209, 437
Bso31I	GGTCTC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	158, 270, 281, 294
BspACI	CCGC	2 cut(s)	73, 483
BspANI	GGCC	3 cut(s)	171, 209, 437
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	356
BssMI	GATC	4 cut(s)	158, 270, 281, 294
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	433
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	50, 133
BstF5I	GGATG	2 cut(s)	262, 479
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	4 cut(s)	161, 273, 284, 297
BstMAI	GTCTC	2 cut(s)	21, 71
BstMBI	GATC	4 cut(s)	158, 270, 281, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	171, 209, 437
BtsCI	GGATG	2 cut(s)	262, 479
Cac8I	GCNNGC	1 cut(s)	329
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	170
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	7 cut(s)	54, 147, 171, 209, 311, 349, 437
CviKI_1	RGCY	7 cut(s)	54, 147, 171, 209, 311, 349, 437
DdeI	CTNAG	2 cut(s)	50, 133
DpnI	GATC	4 cut(s)	160, 272, 283, 296
DpnII	GATC	4 cut(s)	158, 270, 281, 294
DraI	TTTAAA	1 cut(s)	493
EaeI	YGGCCR	2 cut(s)	207, 435
Eco31I	GGTCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	377
FaiI	YATR	3 cut(s)	125, 375, 387
FaqI	GGGAC	2 cut(s)	275, 289
FatI	CATG	1 cut(s)	373
FauI	CCCGC	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	25
FokI	GGATG	2 cut(s)	269, 466
FspI	TGCGCA	1 cut(s)	326
GlaI	GCGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	171, 209, 437
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	2 cut(s)	9, 26
HindII	GTYRAC	2 cut(s)	9, 26
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	1 cut(s)	197
Hpy166II	GTNNAC	3 cut(s)	9, 26, 104
Hpy188I	TCNGA	2 cut(s)	59, 319
Hpy188III	TCNNGA	4 cut(s)	201, 265, 274, 292
Hpy8I	GTNNAC	3 cut(s)	9, 26, 104
Hpy99I	CGWCG	2 cut(s)	27, 218
HpyAV	CCTTC	2 cut(s)	139, 465
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	50, 133
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	158, 270, 281, 294
LmnI	GCTCC	2 cut(s)	316, 354
LpnPI	CCDG	4 cut(s)	134, 161, 369, 432
LweI	GCATC	1 cut(s)	409
MalI	GATC	4 cut(s)	160, 272, 283, 296
MboI	GATC	4 cut(s)	158, 270, 281, 294
MboII	GAAGA	6 cut(s)	77, 149, 231, 280, 289, 389
MfeI	CAATTG	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	2 cut(s)	209, 437
MluCI	AATT	4 cut(s)	120, 189, 229, 441
MluNI	TGGCCA	2 cut(s)	209, 437
MnlI	CCTC	7 cut(s)	30, 53, 149, 187, 325, 355, 453
Mox20I	TGGCCA	2 cut(s)	209, 437
MscI	TGGCCA	2 cut(s)	209, 437
MseI	TTAA	2 cut(s)	468, 492
MslI	CAYNNNNRTG	1 cut(s)	247
Msp20I	TGGCCA	2 cut(s)	209, 437
MspR9I	CCNGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	4 cut(s)	158, 270, 281, 294
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	1 cut(s)	312
NsbI	TGCGCA	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	197
PsiI	TTATAA	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	247
SalI	GTCGAC	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	468, 492
Sau3AI	GATC	4 cut(s)	158, 270, 281, 294
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	4 cut(s)	56, 131, 351, 366
SfaNI	GCATC	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	247
Sse9I	AATT	4 cut(s)	120, 189, 229, 441
SsiI	CCGC	2 cut(s)	73, 483
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	4 cut(s)	25, 266, 360, 458
TasI	AATT	4 cut(s)	120, 189, 229, 441
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	468, 492
Tru9I	TTAA	2 cut(s)	468, 492
TspDTI	ATGAA	4 cut(s)	73, 231, 273, 390
TspGWI	ACGGA	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	102
XapI	RAATTY	2 cut(s)	229, 441
XmiI	GTMKAC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.