Rmu_sc0041838.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041838.1
OG0016961
Physical Location & Seq
Forward (+)
1002 .. 1437
436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041838.1_g000001.1.cds

Sequence Viewer

Length: 430 bp
atgtacaaatacgatgtgtttctaagcttcagaggggaagatacccgcgagactttcacctgccatctgtatcgtgcgctaactgcgaaaggaattataacatttctagatgacgaaagcctggagagaggatcaaccattggcccatcactttttgctgcaattcaggactcaagaatcgcccttgtcgttctttcagagaatttcgcttcttcatcctggtgcttggatgaactctccaagatttttcaatgcttggtaaggagtggacgattcgtcttcccgatcttctacggagtggatccttccgatgtgcgcaagcaaacgggaagttttcagctgcgtacagtagcgataagggaacatgaagaagtttatggaaataaggacaaactagaggagtggagacatgctttgacaacggttggcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

143

Amino Acids

16.36

Weight (kDa)

5.62

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AarI CACCTGC 1 cut(s) 68
Acc16I TGCGCA 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 68
AccII CGCG 1 cut(s) 48
AciI CCGC 1 cut(s) 46
AclWI GGATC 3 cut(s) 139, 296, 309
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 13
AfaI GTAC 2 cut(s) 5, 346
AgsI TTSAA 1 cut(s) 251
AhdI GACNNNNNGTC 1 cut(s) 275
AjnI CCWGG 2 cut(s) 120, 218
AluBI AGCT 2 cut(s) 27, 340
AluI AGCT 2 cut(s) 27, 340
Alw26I GTCTC 2 cut(s) 44, 400
AlwI GGATC 3 cut(s) 139, 296, 309
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 158, 340
ApoI RAATTY 1 cut(s) 202
AspLEI GCGC 2 cut(s) 79, 318
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 49
BamHI GGATCC 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 145, 327
BccI CCATC 2 cut(s) 72, 154
BciT130I CCWGG 2 cut(s) 122, 220
BcoDI GTCTC 2 cut(s) 44, 400
BfaI CTAG 2 cut(s) 107, 395
BfuAI ACCTGC 1 cut(s) 68
BisI GCNGC 2 cut(s) 159, 341
BlsI GCNGC 2 cut(s) 160, 342
Bme1390I CCNGG 2 cut(s) 122, 220
BmeRI GACNNNNNGTC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 2 cut(s) 122, 220
BpiI GAAGAC 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 157
BseBI CCWGG 2 cut(s) 122, 220
BseGI GGATG 2 cut(s) 215, 235
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 2 cut(s) 145, 327
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 144
BsmAI GTCTC 2 cut(s) 44, 400
BsnI GGCC 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 131, 285, 301
BspACI CCGC 1 cut(s) 46
BspANI GGCC 1 cut(s) 144
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 303
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 3 cut(s) 139, 296, 309
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 3 cut(s) 131, 285, 301
Bst2UI CCWGG 2 cut(s) 122, 220
Bst4CI ACNGT 2 cut(s) 349, 424
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 2 cut(s) 215, 235
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 2 cut(s) 79, 318
BstKTI GATC 3 cut(s) 134, 288, 304
BstMAI GTCTC 2 cut(s) 44, 400
BstMBI GATC 3 cut(s) 131, 285, 301
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 2 cut(s) 122, 220
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 120, 218
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 145, 327
BstV2I GAAGAC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 2 cut(s) 215, 235
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 320
CfoI GCGC 2 cut(s) 79, 318
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 4, 345
CviAII CATG 2 cut(s) 365, 410
CviJI RGCY 4 cut(s) 27, 120, 144, 340
CviKI_1 RGCY 4 cut(s) 27, 120, 144, 340
CviQI GTAC 2 cut(s) 4, 345
DdeI CTNAG 1 cut(s) 23
DpnI GATC 3 cut(s) 133, 287, 303
DpnII GATC 3 cut(s) 131, 285, 301
DriI GACNNNNNGTC 1 cut(s) 275
Eam1105I GACNNNNNGTC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 120, 218
FaeI CATG 2 cut(s) 368, 413
FaiI YATR 4 cut(s) 98, 366, 378, 411
FatI CATG 2 cut(s) 364, 409
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 159, 341
FokI GGATG 2 cut(s) 202, 242
Fsp4HI GCNGC 2 cut(s) 159, 341
FspBI CTAG 2 cut(s) 107, 395
FspI TGCGCA 1 cut(s) 317
GlaI GCGC 2 cut(s) 78, 317
GluI GCNGC 2 cut(s) 159, 341
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 144
HhaI GCGC 2 cut(s) 79, 318
Hin1II CATG 2 cut(s) 368, 413
Hin6I GCGC 2 cut(s) 77, 316
HinP1I GCGC 2 cut(s) 77, 316
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 3 cut(s) 170, 177, 273
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 3 cut(s) 32, 199, 310
Hpy188III TCNNGA 4 cut(s) 107, 167, 174, 283
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 2 cut(s) 349, 424
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 2 cut(s) 368, 413
HspAI GCGC 2 cut(s) 77, 316
Kzo9I GATC 3 cut(s) 131, 285, 301
LpnPI CCDG 6 cut(s) 73, 107, 134, 152, 205, 232
Lsp1109I GCAGC 2 cut(s) 145, 327
MaeI CTAG 2 cut(s) 107, 395
MalI GATC 3 cut(s) 133, 287, 303
MboI GATC 3 cut(s) 131, 285, 301
MboII GAAGA 5 cut(s) 50, 204, 271, 280, 380
MflI RGATCY 1 cut(s) 301
MluCI AATT 3 cut(s) 93, 162, 202
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 3 cut(s) 26, 122, 391
MslI CAYNNNNRTG 1 cut(s) 220
MspA1I CMGCKG 1 cut(s) 340
MspR9I CCNGG 2 cut(s) 122, 220
MvaI CCWGG 2 cut(s) 122, 220
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 3 cut(s) 131, 285, 301
NlaIII CATG 2 cut(s) 368, 413
NlaIV GGNNCC 1 cut(s) 303
NsbI TGCGCA 1 cut(s) 317
NspI RCATGY 1 cut(s) 413
PaqCI CACCTGC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 2 cut(s) 177, 273
PkrI GCNGC 2 cut(s) 160, 342
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PsiI TTATAA 1 cut(s) 98
Psp6I CCWGG 2 cut(s) 120, 218
PspGI CCWGG 2 cut(s) 120, 218
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 2 cut(s) 5, 346
RsaNI GTAC 2 cut(s) 4, 345
RseI CAYNNNNRTG 1 cut(s) 220
SatI GCNGC 2 cut(s) 159, 341
Sau3AI GATC 3 cut(s) 131, 285, 301
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 122, 220
SetI ASST 3 cut(s) 29, 62, 342
SmiMI CAYNNNNRTG 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 3 cut(s) 93, 162, 202
SsiI CCGC 1 cut(s) 46
SspMI CTAG 2 cut(s) 107, 395
StyD4I CCNGG 2 cut(s) 120, 218
TaaI ACNGT 2 cut(s) 349, 424
TasI AATT 3 cut(s) 93, 162, 202
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 177, 273
TseI GCWGC 2 cut(s) 158, 340
TspDTI ATGAA 3 cut(s) 204, 246, 381
TspGWI ACGGA 1 cut(s) 309
XapI RAATTY 1 cut(s) 202
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 1 cut(s) 413
XspI CTAG 2 cut(s) 107, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.