RchiOBHm_Chr6g0263771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008165
Physical Location & Seq
Reverse (-)
18641073 .. 18641897
825 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23657

Sequence Viewer

Length: 330 bp
ATGCTTTTTAAGCTTTTGTCTTTAGCTCAAAGCTACAGTCTTGAACGGGGCTACTCGAGAAGTGACTTGCTGCCATACATCATACAGACGAAAGGCAGACATATTTTCCTGGGACTACTCTGGTTCGTGCAATCCTTTGTGTCAACTAGCCCTCTCCATTCACGGTGGGTCGTAAGCTTCGGCATTCATTGTCTCCATCACTCGGGCACCCTTGCAATCATCTTGTGCAGGTGGAGTAACATGTTGACTTTGGCGCTGCATAAAGATCCCTCCGGAGCAGTTTCTTCACTTTGTGAGCTCAAGAACCCCGCAGATTCGTACTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.29

Weight (kDa)

9.22

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 219
Acc36I ACCTGC 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 206
AccIII TCCGGA 1 cut(s) 272
AciI CCGC 1 cut(s) 309
AclWI GGATC 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 5 cut(s) 13, 26, 33, 177, 298
AluI AGCT 5 cut(s) 13, 26, 33, 177, 298
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 260
Ama87I CYCGRG 2 cut(s) 55, 202
Aor13HI TCCGGA 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 70, 256
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
AspLEI GCGC 1 cut(s) 256
AvaI CYCGRG 2 cut(s) 55, 202
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 2 cut(s) 57, 243
BccI CCATC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 219
BisI GCNGC 2 cut(s) 71, 257
BlsI GCNGC 2 cut(s) 72, 258
Bme1390I CCNGG 1 cut(s) 110
BmeT110I CYCGRG 2 cut(s) 55, 202
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseAI TCCGGA 1 cut(s) 272
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 2 cut(s) 57, 243
BsgI GTGCAG 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 2 cut(s) 55, 202
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 183
BsoBI CYCGRG 2 cut(s) 55, 202
Bsp1286I GDGCHC 2 cut(s) 209, 300
Bsp13I TCCGGA 1 cut(s) 272
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 1 cut(s) 309
BspEI TCCGGA 1 cut(s) 272
BspLI GGNNCC 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 219
BspPI GGATC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 38, 165
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 57, 243
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BveI ACCTGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 241
CviJI RGCY 7 cut(s) 13, 26, 33, 51, 150, 177, 298
CviKI_1 RGCY 7 cut(s) 13, 26, 33, 51, 150, 177, 298
CviQI GTAC 1 cut(s) 319
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
DraIII CACNNNGTG 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 298
Eco88I CYCGRG 2 cut(s) 55, 202
EcoICRI GAGCTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 300
FaeI CATG 1 cut(s) 244
FaiI YATR 5 cut(s) 76, 83, 102, 242, 261
FaqI GGGAC 1 cut(s) 126
FatI CATG 1 cut(s) 240
FauI CCCGC 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 71, 257
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 2 cut(s) 71, 257
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 255
GluI GCNGC 2 cut(s) 71, 257
HaeII RGCGCY 1 cut(s) 257
HapII CCGG 1 cut(s) 273
HhaI GCGC 1 cut(s) 256
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 2 cut(s) 144, 246
HindII GTYRAC 2 cut(s) 144, 246
HindIII AAGCTT 2 cut(s) 11, 175
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 273
Hpy166II GTNNAC 2 cut(s) 144, 246
Hpy188III TCNNGA 4 cut(s) 41, 57, 273, 301
Hpy8I GTNNAC 2 cut(s) 144, 246
HpyCH4III ACNGT 2 cut(s) 38, 165
HpyCH4V TGCA 4 cut(s) 130, 215, 228, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 1 cut(s) 254
Kpn2I TCCGGA 1 cut(s) 272
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 5 cut(s) 95, 106, 122, 214, 286
Lsp1109I GCAGC 2 cut(s) 57, 243
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 62, 236
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 1 cut(s) 276
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 209, 300
MnlI CCTC 2 cut(s) 162, 280
MroI TCCGGA 1 cut(s) 272
MseI TTAA 1 cut(s) 9
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 183
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 1 cut(s) 244
PaeR7I CTCGAG 1 cut(s) 55
PaqCI CACCTGC 1 cut(s) 219
PciI ACATGT 1 cut(s) 240
PctI GAATGC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 72, 258
PscI ACATGT 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 2 cut(s) 71, 257
Sau3AI GATC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 2 cut(s) 209, 300
SetI ASST 6 cut(s) 15, 28, 35, 179, 233, 300
SfcI CTRYAG 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 55
SlaI CTCGAG 1 cut(s) 55
SmlI CTYRAG 2 cut(s) 55, 299
SmoI CTYRAG 2 cut(s) 55, 299
SsiI CCGC 1 cut(s) 309
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 38, 165
TaqI TCGA 1 cut(s) 56
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 2 cut(s) 70, 256
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 176
XceI RCATGY 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 55
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.