Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008165

Physical Location & Seq

Genomic Coordinates Reverse (-)

52672549 .. 52673748

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG450000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCCTCTTGATCTTTTATTTTTGGCTTGTTCTCAAAGAGATTTGCAGCCTAGCTGCCTCAATTATGCATATTCTGAAGCTTCTGCTCTGCTGCAAATAAGTGGAATAAGCTTCCATTTCTCTTTTTGCGTAGCCGTGACCATGAAACCAAAAGCAAGGACTTCATTTTCCTTTCTTGCTGATCATGAGATTGCTTTTCCATCTTGCAGACACAATTTTGAAGAAAAGCATTGCAGGCGGTGTTCAAACCATTGCAACAAACATAATTTTGAAGGAAGACGTTGCAGCTTGACCACATCTTTTCTAGGAGTTAATAAACATTGCTGCCACTATCTTGTGCCAAGTAACAGGAACCAGACGACTCCCATCTCTCTTGTATTTCGTGGCTGCAGTTTAGTGATCGAGGGTGAGCCGAACCGAGCGCTTTGCAGGCTTGTGGCTGGAGGTAGGCACCCTTTTATAGAGAGATGGCCACTTCACTTTCAAGGCAGCATTTTGATGATGACTTTGATGCAGGTGGATAACTTGGGGCTGAAACTCTACACGGGGATCATCTTGGAGCAGCTTCCCTACTGTTGTGAACTCGGGAACTTTGCAGAACCGTACTCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

23.14

Weight (kDa)

8.39

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008165)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c23g0500821 RchiOBHm_Chr3g0490881 RchiOBHm_Chr4g0402781 RchiOBHm_Chr5g0067791 RchiOBHm_Chr6g0263771 RchiOBHm_Chr6g0276611 RchiOBHm_Chr7g0214371
rosa_roxburghii	Rroxscaffold_3G00227420 Rroxscaffold_7G00202740
rosa_samantha	Rh1BG387200 Rh1CG400700 Rh2DG528200 Rh4AG153800 Rh4BG082800 Rh5CG282800 Rh5CG390900 Rh5CG428300 Rh6CG034600 Rh6DG032300 Rh6DG176400 Rh6DG209900 Rh6DG331900 Rh6DG375100 Rh7BG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	505
Acc36I	ACCTGC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	450
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	605
AfeI	AGCGCT	1 cut(s)	423
AgsI	TTSAA	4 cut(s)	221, 246, 272, 485
AluBI	AGCT	5 cut(s)	54, 80, 111, 288, 565
AluI	AGCT	5 cut(s)	54, 80, 111, 288, 565
AlwI	GGATC	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	584
Aor51HI	AGCGCT	1 cut(s)	423
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	8 cut(s)	46, 54, 91, 285, 324, 387, 489, 562
AspLEI	GCGC	1 cut(s)	424
AsuHPI	GGTGA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	283
BbvI	GCAGC	8 cut(s)	41, 58, 78, 297, 311, 374, 501, 574
BccI	CCATC	3 cut(s)	208, 374, 462
BceAI	ACGGC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BclI	TGATCA	1 cut(s)	181
BfaI	CTAG	2 cut(s)	51, 305
BfmI	CTRYAG	1 cut(s)	388
BfoI	RGCGCY	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	8 cut(s)	47, 55, 92, 286, 325, 388, 490, 563
BlsI	GCNGC	8 cut(s)	48, 56, 93, 287, 326, 389, 491, 564
BmeT110I	CYCGRG	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	353, 452
BmsI	GCATC	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	462
Bse3DI	GCAATG	3 cut(s)	229, 250, 319
BseMI	GCAATG	3 cut(s)	229, 250, 319
BseXI	GCAGC	8 cut(s)	41, 58, 78, 297, 311, 374, 501, 574
BshFI	GGCC	1 cut(s)	472
BshNI	GGYRCC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	584
BsnI	GGCC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	584
Bsp143I	GATC	4 cut(s)	10, 181, 399, 549
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	472
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	353, 452
BspMAI	CTGCAG	1 cut(s)	392
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	450
BsrDI	GCAATG	3 cut(s)	229, 250, 319
BssMI	GATC	4 cut(s)	10, 181, 399, 549
Bst4CI	ACNGT	2 cut(s)	575, 603
BstC8I	GCNNGC	2 cut(s)	236, 431
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	4 cut(s)	13, 184, 402, 552
BstMBI	GATC	4 cut(s)	10, 181, 399, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 430
BstSFI	CTRYAG	1 cut(s)	388
BstV1I	GCAGC	8 cut(s)	41, 58, 78, 297, 311, 374, 501, 574
BstV2I	GAAGAC	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	472
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	2 cut(s)	236, 431
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	2 cut(s)	142, 185
CviQI	GTAC	1 cut(s)	604
DpnI	GATC	4 cut(s)	12, 183, 401, 551
DpnII	GATC	4 cut(s)	10, 181, 399, 549
EaeI	YGGCCR	1 cut(s)	470
Eco47III	AGCGCT	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	584
EcoT22I	ATGCAT	1 cut(s)	70
FaeI	CATG	2 cut(s)	145, 188
FaiI	YATR	6 cut(s)	66, 70, 143, 186, 264, 461
FatI	CATG	2 cut(s)	141, 184
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	8 cut(s)	47, 55, 92, 286, 325, 388, 490, 563
Fsp4HI	GCNGC	8 cut(s)	47, 55, 92, 286, 325, 388, 490, 563
FspBI	CTAG	2 cut(s)	51, 305
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	8 cut(s)	47, 55, 92, 286, 325, 388, 490, 563
GsuI	CTGGAG	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	472
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	2 cut(s)	145, 188
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HindIII	AAGCTT	2 cut(s)	78, 109
HinfI	GANTC	1 cut(s)	361
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	8, 185, 586
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	575, 603
HpyCH4IV	ACGT	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 430
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	2 cut(s)	145, 188
HspAI	GCGC	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	10, 181, 399, 549
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	6 cut(s)	220, 334, 368, 415, 426, 500
Lsp1109I	GCAGC	8 cut(s)	41, 58, 78, 297, 311, 374, 501, 574
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	2 cut(s)	51, 305
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	2 cut(s)	136, 344
MalI	GATC	4 cut(s)	12, 183, 401, 551
MboI	GATC	4 cut(s)	10, 181, 399, 549
MboII	GAAGA	2 cut(s)	233, 288
MlsI	TGGCCA	1 cut(s)	472
MluCI	AATT	3 cut(s)	61, 214, 265
MluNI	TGGCCA	1 cut(s)	472
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	4 cut(s)	15, 68, 397, 437
Mox20I	TGGCCA	1 cut(s)	472
Mph1103I	ATGCAT	1 cut(s)	70
MscI	TGGCCA	1 cut(s)	472
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	472
MwoI	GCNNNNNNNGC	2 cut(s)	235, 430
NdeII	GATC	4 cut(s)	10, 181, 399, 549
NlaIII	CATG	2 cut(s)	145, 188
NlaIV	GGNNCC	2 cut(s)	353, 452
NmuCI	GTSAC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	70
PagI	TCATGA	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	505
PkrI	GCNGC	8 cut(s)	48, 56, 93, 287, 326, 389, 491, 564
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	353, 452
PstI	CTGCAG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	8 cut(s)	47, 55, 92, 286, 325, 388, 490, 563
Sau3AI	GATC	4 cut(s)	10, 181, 399, 549
SchI	GAGTC	1 cut(s)	355
SetI	ASST	8 cut(s)	56, 82, 113, 283, 290, 448, 519, 567
SfaNI	GCATC	1 cut(s)	501
SfcI	CTRYAG	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	497
Sse9I	AATT	3 cut(s)	61, 214, 265
SsiI	CCGC	1 cut(s)	238
SspMI	CTAG	2 cut(s)	51, 305
TaaI	ACNGT	2 cut(s)	575, 603
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	402
TasI	AATT	3 cut(s)	61, 214, 265
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	8 cut(s)	46, 54, 91, 285, 324, 387, 489, 562
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	153, 158
XspI	CTAG	2 cut(s)	51, 305
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.